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Yun S. Advances, challenges, and prospects of electroencephalography-based biomarkers for psychiatric disorders: a narrative review. JOURNAL OF YEUNGNAM MEDICAL SCIENCE 2024; 41:261-268. [PMID: 39246060 PMCID: PMC11534409 DOI: 10.12701/jyms.2024.00668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Revised: 08/06/2024] [Accepted: 08/09/2024] [Indexed: 09/10/2024]
Abstract
Owing to a lack of appropriate biomarkers for accurate diagnosis and treatment, psychiatric disorders cause significant distress and functional impairment, leading to social and economic losses. Biomarkers are essential for diagnosing, predicting, treating, and monitoring various diseases. However, their absence in psychiatry is linked to the complex structure of the brain and the lack of direct monitoring modalities. This review examines the potential of electroencephalography (EEG) as a neurophysiological tool for identifying psychiatric biomarkers. EEG noninvasively measures brain electrophysiological activity and is used to diagnose neurological disorders, such as depression, bipolar disorder (BD), and schizophrenia, and identify psychiatric biomarkers. Despite extensive research, EEG-based biomarkers have not been clinically utilized owing to measurement and analysis constraints. EEG studies have revealed spectral and complexity measures for depression, brainwave abnormalities in BD, and power spectral abnormalities in schizophrenia. However, no EEG-based biomarkers are currently used clinically for the treatment of psychiatric disorders. The advantages of EEG include real-time data acquisition, noninvasiveness, cost-effectiveness, and high temporal resolution. Challenges such as low spatial resolution, susceptibility to interference, and complexity of data interpretation limit its clinical application. Integrating EEG with other neuroimaging techniques, advanced signal processing, and standardized protocols is essential to overcome these limitations. Artificial intelligence may enhance EEG analysis and biomarker discovery, potentially transforming psychiatric care by providing early diagnosis, personalized treatment, and improved disease progression monitoring.
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Affiliation(s)
- Seokho Yun
- Department of Psychiatry, Yeungnam University College of Medicine, Daegu, Korea
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2
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Lei D, Qin K, Li W, Pinaya WHL, Tallman MJ, Patino LR, Strawn JR, Fleck D, Klein CC, Lui S, Gong Q, Adler CM, Mechelli A, Sweeney JA, DelBello MP. Brain morphometric features predict medication response in youth with bipolar disorder: a prospective randomized clinical trial. Psychol Med 2023; 53:4083-4093. [PMID: 35392995 PMCID: PMC10317810 DOI: 10.1017/s0033291722000757] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 01/17/2022] [Accepted: 02/27/2022] [Indexed: 02/05/2023]
Abstract
BACKGROUND Identification of treatment-specific predictors of drug therapies for bipolar disorder (BD) is important because only about half of individuals respond to any specific medication. However, medication response in pediatric BD is variable and not well predicted by clinical characteristics. METHODS A total of 121 youth with early course BD (acute manic/mixed episode) were prospectively recruited and randomized to 6 weeks of double-blind treatment with quetiapine (n = 71) or lithium (n = 50). Participants completed structural magnetic resonance imaging (MRI) at baseline before treatment and 1 week after treatment initiation, and brain morphometric features were extracted for each individual based on MRI scans. Positive antimanic treatment response at week 6 was defined as an over 50% reduction of Young Mania Rating Scale scores from baseline. Two-stage deep learning prediction model was established to distinguish responders and non-responders based on different feature sets. RESULTS Pre-treatment morphometry and morphometric changes occurring during the first week can both independently predict treatment outcome of quetiapine and lithium with balanced accuracy over 75% (all p < 0.05). Combining brain morphometry at baseline and week 1 allows prediction with the highest balanced accuracy (quetiapine: 83.2% and lithium: 83.5%). Predictions in the quetiapine and lithium group were found to be driven by different morphometric patterns. CONCLUSIONS These findings demonstrate that pre-treatment morphometric measures and acute brain morphometric changes can serve as medication response predictors in pediatric BD. Brain morphometric features may provide promising biomarkers for developing biologically-informed treatment outcome prediction and patient stratification tools for BD treatment development.
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Affiliation(s)
- Du Lei
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
| | - Kun Qin
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu 610041, PR China
| | - Wenbin Li
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu 610041, PR China
| | - Walter H. L. Pinaya
- Department of Biomedical Engineering, School of Biomedical Engineering & Imaging Sciences, King's College London, Westminster Bridge Road, London, UK
| | - Maxwell J. Tallman
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
| | - L. Rodrigo Patino
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
| | - Jeffrey R. Strawn
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
| | - David Fleck
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
| | - Christina C. Klein
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
| | - Su Lui
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu 610041, PR China
| | - Qiyong Gong
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu 610041, PR China
| | - Caleb M. Adler
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
| | - Andrea Mechelli
- Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, De Crespigny Park, London, UK
| | - John A. Sweeney
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu 610041, PR China
| | - Melissa P. DelBello
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati College of Medicine, Cincinnati 45219, OH, USA
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3
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Yun S, Jeong B. Aberrant EEG signal variability at a specific temporal scale in major depressive disorder. Clin Neurophysiol 2021; 132:1866-1877. [PMID: 34147011 DOI: 10.1016/j.clinph.2021.05.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 04/17/2021] [Accepted: 05/18/2021] [Indexed: 11/28/2022]
Abstract
OBJECTIVE Signal variability is linked to irregularities in time series caused by intrinsic nonlinearities of the neural system and can be measured on variable temporal scales over short time series. By measuring refined complex multiscale permutation entropy (RCMPE) from resting-state electroencephalography (EEG) data, we investigated the presence of a specific range of time scales characterizing major depressive disorder (MDD). METHOD We used an EEG dataset acquired from 22 MDD patients and 22 healthy controls in the eyes-closed (EC) and eyes-open (EO) states available on the PRED + CT website. Signal variability in both the EC and EO states was compared between the two groups, and their relationship to depressive symptom severity was examined. RESULTS In the EC state, the RCMPE was higher in the MDD group than in the control group on a coarse temporal scale, approximately 20-32 ms, at almost all sensors. It also showed a negative correlation with depressive symptom severity on a fine temporal scale, approximately 2-26 ms, in the frontal, right temporal, and left parietal sensor areas in MDD. The EO state revealed a group difference but no relationship with depressive symptom severity. CONCLUSION Our results suggested that the diagnosis of MDD as a trait and the severity of depressive symptoms as a state are linked to EEG signal variability on the coarse temporal scale and the fine scale in the resting state, respectively. SIGNIFICANCE Signal variability reflects different characteristics of depression depending on the temporal scale.
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Affiliation(s)
- Seokho Yun
- Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Bumseok Jeong
- Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea.
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4
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Lai CH. Fronto-limbic neuroimaging biomarkers for diagnosis and prediction of treatment responses in major depressive disorder. Prog Neuropsychopharmacol Biol Psychiatry 2021; 107:110234. [PMID: 33370569 DOI: 10.1016/j.pnpbp.2020.110234] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Revised: 12/02/2020] [Accepted: 12/21/2020] [Indexed: 12/23/2022]
Abstract
The neuroimaging is an important tool for understanding the biomarkers and predicting treatment responses in major depressive disorder (MDD). The potential biomarkers and prediction of treatment response in MDD will be addressed in the review article. The brain regions of cognitive control and emotion regulation, such as the frontal and limbic regions, might represent the potential targets for MDD biomarkers. The potential targets of frontal lobes might include anterior cingulate cortex (ACC), dorsolateral prefrontal cortex (DLPFC) and orbitofrontal cortex (OFC). For the limbic system, hippocampus and amygdala might be the potentially promising targets for MDD. The potential targets of fronto-limbic regions have been found in the studies of several major neuroimaging modalities, such as the magnetic resonance imaging, near-infrared spectroscopy, electroencephalography, positron emission tomography, and single-photon emission computed tomography. Additional regions, such as brainstem and midbrain, might also play a part in the MDD biomarkers. For the prediction of treatment response, the gray matter volumes, white matter tracts, functional representations and receptor bindings of ACC, DLPFC, OFC, amygdala, and hippocampus might play a role in the prediction of antidepressant responses in MDD. For the response prediction of psychotherapies, the fronto-limbic, reward regions, and insula will be the potential targets. For the repetitive transcranial magnetic stimulation, the DLPFC, ACC, limbic, and visuospatial regions might represent the predictive targets for treatment. The neuroimaging targets of MDD might be focused in the fronto-limbic regions. However, the neuroimaging targets for the prediction of treatment responses might be inconclusive and beyond the fronto-limbic regions.
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Affiliation(s)
- Chien-Han Lai
- Institute of Biophotonics, National Yang-Ming University, Taipei, Taiwan; PhD Psychiatry & Neuroscience Clinic, Taoyuan, Taiwan.
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Rodríguez-González V, Gómez C, Shigihara Y, Hoshi H, Revilla-Vallejo M, Hornero R, Poza J. Consistency of local activation parameters at sensor- and source-level in neural signals. J Neural Eng 2020; 17:056020. [PMID: 33055364 DOI: 10.1088/1741-2552/abb582] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
OBJECTIVE Although magnetoencephalography and electroencephalography (M/EEG) signals at sensor level are robust and reliable, they suffer from different degrees of distortion due to changes in brain tissue conductivities, known as field spread and volume conduction effects. To estimate original neural generators from M/EEG activity acquired at sensor level, diverse source localisation algorithms have been proposed; however, they are not exempt from limitations and usually involve time-consuming procedures. Connectivity and network-based M/EEG analyses have been found to be affected by field spread and volume conduction effects; nevertheless, the influence of the aforementioned effects on widely used local activation parameters has not been assessed yet. The goal of this study is to evaluate the consistency of various local activation parameters when they are computed at sensor- and source-level. APPROACH Six spectral (relative power, median frequency, and individual alpha frequency) and non-linear parameters (Lempel-Ziv complexity, sample entropy, and central tendency measure) are computed from M/EEG signals at sensor- and source-level using four source inversion methods: weighted minimum norm estimate (wMNE), standardised low-resolution brain electromagnetic tomography (sLORETA), linear constrained minimum variance (LCMV), and dynamical statistical parametric mapping (dSPM). MAIN RESULTS Our results show that the spectral and non-linear parameters yield similar results at sensor- and source-level, showing high correlation values between them for all the source inversion methods evaluated and both modalities of signal, EEG and MEG. Furthermore, the correlation values remain high when performing coarse-grained spatial analyses. SIGNIFICANCE To the best of our knowledge, this is the first study analysing how field spread and volume conduction effects impact on local activation parameters computed from resting-state neural activity. Our findings evidence that local activation parameters are robust against field spread and volume conduction effects and provide equivalent information at sensor- and source-level even when performing regional analyses.
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Chattun MR, Zhang S, Chen Y, Wang Q, Amdanee N, Tian S, Lu Q, Yao Z. Caudothalamic dysfunction in drug-free suicidally depressed patients: an MEG study. Eur Arch Psychiatry Clin Neurosci 2020; 270:217-227. [PMID: 30552507 DOI: 10.1007/s00406-018-0968-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/29/2018] [Accepted: 12/06/2018] [Indexed: 12/16/2022]
Abstract
Major depressive disorder (MDD), characterized by low mood or anhedonia, is commonly associated with a greater suicidal susceptibility. There are numerous suicide-related findings pertaining to the dorsolateral prefrontal cortex (DLPFC), caudate nucleus and thalamus, which form a cortico-striato-thalamo-cortical (CSTC) circuit responsible for executive function and working memory. An aberrant CSTC circuitry is hypothesized to be implicated in depressed patients with a high suicidal risk. 27 MDD patients were assessed with the Nurses Global Assessment of Suicide Risk (NGASR), following which 14 patients were classified into a high suicide risk group (NGASR ≥ 12) and 13 patients were assigned to a low suicide risk group (NGASR < 6). All 27 patients were enrolled with 25 healthy controls for resting-state magnetoencephalography (MEG). Cross-frequency coupling (CFC) measured the phase of alpha-band (8-13 Hz) as it modulated to cortical gamma-band (30-48 Hz). There was a significantly lower alpha-to-gamma phase-amplitude coupling (PAC) between the right caudate and left thalamus in high-risk suicide group compared to both the low-risk suicide group and healthy controls. The presence of a weaker coupling between the right caudate and left thalamus is indicative of a caudothalamic abnormality in suicidally depressed patients. This implies that a disruption of CSTC loop could result in executive dysfunction and working memory impairment, leading to an increased suicidal risk in MDD patients. In the future, this preliminary study has the possibility of being replicated on a larger scale, and hence validates caudothalamic dysfunction as a reliable neuroimaging biomarker for suicide in depression.
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Affiliation(s)
- Mohammad Ridwan Chattun
- Department of Psychiatry, The Affiliated Brain Hospital of Nanjing Medical University, No. 264 Guangzhou Road, Nanjing, 210029, China
| | - Siqi Zhang
- School of Biological Sciences and Medical Engineering, Southeast University, No. 2 Sipailou, Nanjing, 210096, China.,Key Laboratory of Child Development and Learning Science, Southeast University, Nanjing, 210096, China
| | - Yu Chen
- Department of Psychiatry, The Affiliated Brain Hospital of Nanjing Medical University, No. 264 Guangzhou Road, Nanjing, 210029, China
| | - Qiang Wang
- Medical School of Nanjing University, Nanjing Brain Hospital, 22 Hankou Road, Nanjing, 210093, China
| | - Nousayhah Amdanee
- Department of Geriatrics, Jiangsu Province Hospital Affiliated to Nanjing Medical University, Nanjing, 210029, China
| | - Shui Tian
- School of Biological Sciences and Medical Engineering, Southeast University, No. 2 Sipailou, Nanjing, 210096, China.,Key Laboratory of Child Development and Learning Science, Southeast University, Nanjing, 210096, China
| | - Qing Lu
- School of Biological Sciences and Medical Engineering, Southeast University, No. 2 Sipailou, Nanjing, 210096, China. .,Key Laboratory of Child Development and Learning Science, Southeast University, Nanjing, 210096, China.
| | - Zhijian Yao
- Department of Psychiatry, The Affiliated Brain Hospital of Nanjing Medical University, No. 264 Guangzhou Road, Nanjing, 210029, China. .,Medical School of Nanjing University, Nanjing Brain Hospital, 22 Hankou Road, Nanjing, 210093, China.
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7
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Wolff A, de la Salle S, Sorgini A, Lynn E, Blier P, Knott V, Northoff G. Atypical Temporal Dynamics of Resting State Shapes Stimulus-Evoked Activity in Depression-An EEG Study on Rest-Stimulus Interaction. Front Psychiatry 2019; 10:719. [PMID: 31681034 PMCID: PMC6803442 DOI: 10.3389/fpsyt.2019.00719] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Accepted: 09/09/2019] [Indexed: 11/13/2022] Open
Abstract
Major depressive disorder (MDD) is a complex psychiatric disorder characterized by changes in both resting state and stimulus-evoked activity. Whether resting state changes are carried over to stimulus-evoked activity, however, is unclear. We conducted a combined rest (3 min) and task (three-stimulus auditory oddball paradigm) EEG study in n=28 acute depressed MDD patients, comparing them with n=25 healthy participants. Our focus was on the temporal dynamics of both resting state and stimulus-evoked activity for which reason we measured peak frequency (PF), coefficient of variation (CV), Lempel-Ziv complexity (LZC), and trial-to-trial variability (TTV). Our main findings are: i) atypical temporal dynamics in resting state, specifically in the alpha and theta bands as measured by peak frequency (PF), coefficient of variation (CV) and power; ii) decreased reactivity to external deviant stimuli as measured by decreased changes in stimulus-evoked variance and complexity-TTV, LZC, and power and frequency sliding (FS and PS); iii) correlation of stimulus related measures (TTV, LZC, PS, and FS) with resting state measures. Together, our findings show that resting state dynamics alone are atypical in MDD and, even more important, strongly shapes the dynamics of subsequent stimulus-evoked activity. We thus conclude that MDD can be characterized by an atypical temporal dynamic of its rest-stimulus interaction; that, in turn, makes it difficult for depressed patients to react to relevant stimuli such as the deviant tone in our paradigm.
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Affiliation(s)
- Annemnarie Wolff
- University of Ottawa Institute of Mental Health Research, Ottawa, ON, Canada
- Department of Cellular and Molecular Medicine and Neuroscience, Faculty of Medicine, University of Ottawa, Ottawa, ON, Canada
- Brain and Mind Research Institute, University of Ottawa, Ottawa, ON, Canada
| | - Sara de la Salle
- Department of Psychology, Faculty of Social Sciences, University of Ottawa, Ottawa, ON, Canada
| | - Alana Sorgini
- University of Ottawa Institute of Mental Health Research, Ottawa, ON, Canada
| | - Emma Lynn
- Department of Cellular and Molecular Medicine and Neuroscience, Faculty of Medicine, University of Ottawa, Ottawa, ON, Canada
| | - Pierre Blier
- University of Ottawa Institute of Mental Health Research, Ottawa, ON, Canada
- Department of Cellular and Molecular Medicine and Neuroscience, Faculty of Medicine, University of Ottawa, Ottawa, ON, Canada
- Brain and Mind Research Institute, University of Ottawa, Ottawa, ON, Canada
| | - Verner Knott
- University of Ottawa Institute of Mental Health Research, Ottawa, ON, Canada
- Department of Cellular and Molecular Medicine and Neuroscience, Faculty of Medicine, University of Ottawa, Ottawa, ON, Canada
- Department of Psychology, Faculty of Social Sciences, University of Ottawa, Ottawa, ON, Canada
| | - Georg Northoff
- University of Ottawa Institute of Mental Health Research, Ottawa, ON, Canada
- Department of Cellular and Molecular Medicine and Neuroscience, Faculty of Medicine, University of Ottawa, Ottawa, ON, Canada
- Brain and Mind Research Institute, University of Ottawa, Ottawa, ON, Canada
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8
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Abstract
The neuroimaging has been applied in the study of pathophysiology in major depressive disorder (MDD). In this review article, several kinds of methodologies of neuroimaging would be discussed to summarize the promising biomarkers in MDD. For the magnetic resonance imaging (MRI) and magnetoencephalography field, the literature review showed the potentially promising roles of frontal lobes, such as anterior cingulate cortex (ACC), dorsolateral prefrontal cortex (DLPFC) and orbitofrontal cortex (OFC). In addition, the limbic regions, such as hippocampus and amygdala, might be the potentially promising biomarkers for MDD. The structures and functions of ACC, DLPFC, OFC, amygdala and hippocampus might be confirmed as the biomarkers for the prediction of antidepressant treatment responses and for the pathophysiology of MDD. The functions of cognitive control and emotion regulation of these regions might be crucial for the establishment of biomarkers. The near-infrared spectroscopy studies demonstrated that blood flow in the frontal lobe, such as the DLPFC and OFC, might be the biomarkers for the field of near-infrared spectroscopy. The electroencephalography also supported the promising role of frontal regions, such as the ACC, DLPFC and OFC in the biomarker exploration, especially for the sleep electroencephalogram to detect biomarkers in MDD. The positron emission tomography (PET) and single-photon emission computed tomography (SPECT) in MDD demonstrated the promising biomarkers for the frontal and limbic regions, such as ACC, DLPFC and amygdala. However, additional findings in brainstem and midbrain were also found in PET and SPECT. The promising neuroimaging biomarkers of MDD seemed focused in the fronto-limbic regions.
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Affiliation(s)
- Chien-Han Lai
- Institute of Biophotonics, National Yang-Ming University, Taipei, Taiwan.,Psychiatry & Neuroscience Clinic, Taoyuan, Taiwan.,Department of Psychiatry, Yeezen General Hospital, Taoyuan, Taiwan
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Amatya DN, Linker SB, Mendes APD, Santos R, Erikson G, Shokhirev MN, Zhou Y, Sharpee T, Gage FH, Marchetto MC, Kim Y. Dynamical Electrical Complexity Is Reduced during Neuronal Differentiation in Autism Spectrum Disorder. Stem Cell Reports 2019; 13:474-484. [PMID: 31474529 PMCID: PMC6739708 DOI: 10.1016/j.stemcr.2019.08.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 08/03/2019] [Accepted: 08/04/2019] [Indexed: 02/07/2023] Open
Abstract
Neuronal activity can be modeled as a nonlinear dynamical system to yield measures of neuronal state and dysfunction. The electrical recordings of stem cell-derived neurons from individuals with autism spectrum disorder (ASD) and controls were analyzed using minimum embedding dimension (MED) analysis to characterize their dynamical complexity. MED analysis revealed a significant reduction in dynamical complexity in ASD neurons during differentiation, which was correlated to bursting and spike interval measures. MED was associated with clinical endpoints, such as nonverbal intelligence, and was correlated with 53 differentially expressed genes, which were overrepresented with ASD risk genes related to neurodevelopment, cell morphology, and cell migration. Spatiotemporal analysis also showed a prenatal temporal enrichment in cortical and deep brain structures. Together, we present dynamical analysis as a paradigm that can be used to distinguish disease-associated cellular electrophysiological and transcriptional signatures, while taking into account patient variability in neuropsychiatric disorders. Electrical recordings of iPSC-derived neurons can be modeled as a dynamical system Dynamical complexity is characterized by minimum embedding dimension (MED) MED is reduced in ASD neuronal lines during differentiation MED is correlated to gene expression changes relevant to prenatal neurodevelopment
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Affiliation(s)
- Debha N Amatya
- The Salk Institute, Laboratory of Genetics, La Jolla, CA 92037, USA; University of California San Diego, Department of Neurosciences, La Jolla, CA 92093, USA
| | - Sara B Linker
- The Salk Institute, Laboratory of Genetics, La Jolla, CA 92037, USA
| | - Ana P D Mendes
- The Salk Institute, Laboratory of Genetics, La Jolla, CA 92037, USA
| | - Renata Santos
- The Salk Institute, Laboratory of Genetics, La Jolla, CA 92037, USA; Institute of Psychiatry and Neuroscience of Paris (UMR_S1266 INSERM, University of Paris), Laboratory of Dynamic of Neuronal Structure in Health and Disease, Paris, France
| | - Galina Erikson
- The Salk Institute, Integrative Genomics and Bioinformatics Core, La Jolla, CA 92037, USA
| | - Maxim N Shokhirev
- The Salk Institute, Integrative Genomics and Bioinformatics Core, La Jolla, CA 92037, USA
| | - Yuansheng Zhou
- The Salk Institute, Computational Neurobiology Laboratory, La Jolla, CA 92037, USA; University of California San Diego, Division of Biological Sciences, La Jolla, CA 92093, USA
| | - Tatyana Sharpee
- The Salk Institute, Computational Neurobiology Laboratory, La Jolla, CA 92037, USA
| | - Fred H Gage
- The Salk Institute, Laboratory of Genetics, La Jolla, CA 92037, USA
| | - Maria C Marchetto
- The Salk Institute, Laboratory of Genetics, La Jolla, CA 92037, USA.
| | - Yeni Kim
- The Salk Institute, Laboratory of Genetics, La Jolla, CA 92037, USA; Department of Child and Adolescent Psychiatry, National Center for Mental Health, 127 Yongmasanro, Gwangjin-gu, Seoul 04933, South Korea.
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