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Shi E, Zou Y, Zheng Y, Zhang M, Liu S, Zhang S, Zhang X. Kinetic study on anaerobic digestion of long-chain fatty acid enhanced by activated carbon adsorption and direct interspecies electron transfer. BIORESOURCE TECHNOLOGY 2024; 403:130902. [PMID: 38801955 DOI: 10.1016/j.biortech.2024.130902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Revised: 05/24/2024] [Accepted: 05/24/2024] [Indexed: 05/29/2024]
Abstract
This study applied granular activated carbon (GAC) to improve the anaerobic digestion of long-chain fatty acid (LCFA). New kinetics were considered to describe the effect of GAC on the LCFA degradation, including i) The adsorption kinetics of GAC for LCFA, ii) The β-oxidation pathway of LCFA, iii) The attached biomass improved by direct interspecies electron transfer (DIET). The developed model simulated the anaerobic digestion of stearic acid, palmitic acid, myristic acid, and lauric acid with 1.00 and 2.00 g l-1 of GAC. The simulation results suggested that adding GAC led to the increase of km,CnGAC and km,acGAC. As the concentration of GAC increased, the values of kinetic parameters increased while the accumulated acetate concentration decreased. Thus, GAC improved the kinetic parameters of the attached syntrophic communities.
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Affiliation(s)
- En Shi
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China.
| | - Yuliang Zou
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Yunbin Zheng
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Miao Zhang
- School of Material Science and Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Shasha Liu
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Shuai Zhang
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Xiangzhi Zhang
- School of Material Science and Engineering, Shenyang Jianzhu University, Shenyang 110168, China
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2
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Akram J, Song C, El Mashad HM, Chen C, Zhang R, Liu G. Advances in microbial community, mechanisms and stimulation effects of direct interspecies electron transfer in anaerobic digestion. Biotechnol Adv 2024; 76:108398. [PMID: 38914350 DOI: 10.1016/j.biotechadv.2024.108398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 06/11/2024] [Accepted: 06/21/2024] [Indexed: 06/26/2024]
Abstract
Anaerobic digestion (AD) has been proven to be an effective green technology for producing biomethane while reducing environmental pollution. The interspecies electron transfer (IET) processes in AD are critical for acetogenesis and methanogenesis, and these IET processes are carried out via mediated interspecies electron transfer (MIET) and direct interspecies electron transfer (DIET). The latter has recently become a topic of significant interest, considering its potential to allow diffusion-free electron transfer during the AD process steps. To date, different multi-heme c-type cytochromes, electrically conductive pili (e-pili), and other relevant accessories during DIET between microorganisms of different natures have been reported. Additionally, several studies have been carried out on metagenomics and metatranscriptomics for better detection of DIET, the role of DIET's stimulation in alleviating stressed conditions, such as high organic loading rates (OLR) and low pH, and the stimulation mechanisms of DIET in mixed cultures and co-cultures by various conductive materials. Keeping in view this significant research progress, this study provides in-depth insights into the DIET-active microbial community, DIET mechanisms of different species, utilization of various approaches for stimulating DIET, characterization approaches for effectively detecting DIET, and potential future research directions. This study can help accelerate the field's research progress, enable a better understanding of DIET in complex microbial communities, and allow its utilization to alleviate various inhibitions in complex AD processes.
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Affiliation(s)
- Jehangir Akram
- College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Chao Song
- College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Hamed M El Mashad
- Department of Biological and Agricultural Engineering, University of California, Davis, CA 95616, United States; Agricultural Engineering Department, Mansoura University, Egypt
| | - Chang Chen
- College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China.
| | - Ruihong Zhang
- Department of Biological and Agricultural Engineering, University of California, Davis, CA 95616, United States.
| | - Guangqing Liu
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, China.
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3
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Cerk K, Ugalde‐Salas P, Nedjad CG, Lecomte M, Muller C, Sherman DJ, Hildebrand F, Labarthe S, Frioux C. Community-scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing. Microb Biotechnol 2024; 17:e14396. [PMID: 38243750 PMCID: PMC10832553 DOI: 10.1111/1751-7915.14396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Revised: 11/27/2023] [Accepted: 12/20/2023] [Indexed: 01/21/2024] Open
Abstract
Building models is essential for understanding the functions and dynamics of microbial communities. Metabolic models built on genome-scale metabolic network reconstructions (GENREs) are especially relevant as a means to decipher the complex interactions occurring among species. Model reconstruction increasingly relies on metagenomics, which permits direct characterisation of naturally occurring communities that may contain organisms that cannot be isolated or cultured. In this review, we provide an overview of the field of metabolic modelling and its increasing reliance on and synergy with metagenomics and bioinformatics. We survey the means of assigning functions and reconstructing metabolic networks from (meta-)genomes, and present the variety and mathematical fundamentals of metabolic models that foster the understanding of microbial dynamics. We emphasise the characterisation of interactions and the scaling of model construction to large communities, two important bottlenecks in the applicability of these models. We give an overview of the current state of the art in metagenome sequencing and bioinformatics analysis, focusing on the reconstruction of genomes in microbial communities. Metagenomics benefits tremendously from third-generation sequencing, and we discuss the opportunities of long-read sequencing, strain-level characterisation and eukaryotic metagenomics. We aim at providing algorithmic and mathematical support, together with tool and application resources, that permit bridging the gap between metagenomics and metabolic modelling.
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Affiliation(s)
- Klara Cerk
- Quadram Institute BioscienceNorwichUK
- Earlham InstituteNorwichUK
| | | | - Chabname Ghassemi Nedjad
- Inria, University of Bordeaux, INRAETalenceFrance
- University of Bordeaux, CNRS, Bordeaux INP, LaBRI, UMR 5800TalenceFrance
| | - Maxime Lecomte
- Inria, University of Bordeaux, INRAETalenceFrance
- INRAE STLO¸University of RennesRennesFrance
| | | | | | - Falk Hildebrand
- Quadram Institute BioscienceNorwichUK
- Earlham InstituteNorwichUK
| | - Simon Labarthe
- Inria, University of Bordeaux, INRAETalenceFrance
- INRAE, University of Bordeaux, BIOGECO, UMR 1202CestasFrance
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4
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Chai F, Li L, Wang W, Xue S, Liu J. Electro-stimulated anaerobic oxidation of methane with synergistic denitrification by adding AQS: Electron transfer mode and mechanism. ENVIRONMENTAL RESEARCH 2023; 229:115997. [PMID: 37105293 DOI: 10.1016/j.envres.2023.115997] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Revised: 04/10/2023] [Accepted: 04/24/2023] [Indexed: 05/21/2023]
Abstract
Denitrifying anaerobic methane-oxidizing (DAMO) processes, which link anaerobic methane oxidation (AMO) and denitrification, have a promising prospect in anaerobic wastewater treatment. In bioelectrochemical systems (BES), DAMO consortium presented potent metabolic activity. However, the extracellular electron transfer (EET) in BES was poorly understood. This study investigated the EET mechanisms and modes of electron transport in BES dominated by anaerobic methanotrophic bacteria. In the bioreactors with the auxiliary voltage of 0.5 and 1.1 V, named EMN-0.5 and EMN-1.1, respectively, biological voltages of 0.198 and 0.329 V were generated with power densities of 0.6 and 1.20 mW/m2, after removing the voltage. High throughput and metagenome analyses demonstrated that main methanotrophs were DAMO bacteria and Methylocystis sp. The electroactive bacteria detected were Pseudomonas sp., Hypomicrobium sp., Thiobacillus sp, and Rhodococcus sp. The pil, cytochrome c, hdr, and he/fp genes related to EET were present on the electrode surfaces. Carbon 13 isotope tracing and chemicals analysis by GC-MS exhibited that methanol was an intermediate product released to extracellular environment and acted as the electronic carrier to drive the EET in methane oxidation. Extracellular electron transfer was achieved through the collaboration of DAMO bacteria, Methylocystis sp., and Pseudomonas sp. Anthraquinone 2-sulfonic acid ester (AQS) could improve the rate of electron transfer to the extracellular space, especially in the EMN-0.5 reaction system. This study provides a new understanding of AMO consortium metabolism in BES and may provide a scientific basis for developing methane control technology.
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Affiliation(s)
- Fengguang Chai
- State Key Joint Laboratory of Environment Simulation and Pollution Control, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China; School of Ecology and Environment, Zhengzhou University, Zhengzhou, 450001, China
| | - Lin Li
- State Key Joint Laboratory of Environment Simulation and Pollution Control, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China; National Engineering Laboratory for VOCs Pollution Control Material & Technology, University of Chinese Academy of Sciences, Beijing, 101408, China.
| | - Wenwen Wang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing, 100085, China; University of Chinese Academy of Sciences, 19(A) Yuquan Road, Shijingshan District, Beijing, 100049, China
| | - Song Xue
- Environmental Simulation and Pollution Control State Key Joint Laboratory, State Environmental Protection Key Laboratory of Microorganism Application and Risk Control (SMARC), School of Environment, Tsinghua University, Beijing, 100084, PR China
| | - Junxin Liu
- University of Chinese Academy of Sciences, 19(A) Yuquan Road, Shijingshan District, Beijing, 100049, China
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5
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Mohammad Mirsoleimani Azizi S, Zakaria BS, Haffiez N, Ranjan Dhar B. Granular activated carbon remediates antibiotic resistance propagation and methanogenic inhibition induced by polystyrene nanoplastics in sludge anaerobic digestion. BIORESOURCE TECHNOLOGY 2023; 377:128938. [PMID: 36948429 DOI: 10.1016/j.biortech.2023.128938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 03/14/2023] [Accepted: 03/18/2023] [Indexed: 06/18/2023]
Abstract
Nano/microplastics (NPs/MPs) in sewage sludge can induce oxidative stress to the anaerobic digestion (AD) and also proliferate antibiotic resistance genes (ARGs). Recently, granular activated carbon (GAC) has been used as an additive to enhance methane production in AD via direct interspecies electron transfer (DIET); however, its impact on AD exposed to NPs/MPs is yet to be studied. This study examined the effect of GAC (5 and 15 g/L) on sludge AD exposed to 150 µg/L of polystyrene nanoplastics (PsNPs). PsNPs decreased methane yield by 32.3% due to elevated levels of reactive oxygen species. However, GAC addition counteracted this adverse effect and improved methane production, attributed to the potential enrichment of DIET-active microbes and the adsorption of PsNPs by GAC. Moreover, GAC reduced the total abundance of ARGs, which was increased by PsNPs exposure. Thus, GAC can provide dual benefits in mitigating methanogenic inhibition caused by PsNPs and ARG spread.
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Affiliation(s)
| | - Basem S Zakaria
- Civil and Environmental Engineering, University of Alberta, 116 Street NW, Edmonton, AB T6G 1H9, Canada
| | - Nervana Haffiez
- Civil and Environmental Engineering, University of Alberta, 116 Street NW, Edmonton, AB T6G 1H9, Canada
| | - Bipro Ranjan Dhar
- Civil and Environmental Engineering, University of Alberta, 116 Street NW, Edmonton, AB T6G 1H9, Canada.
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6
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Hashemi S, Solli L, Lien KM, Lamb JJ, Horn SJ. Culture adaptation for enhanced biogas production from birch wood applying stable carbon isotope analysis to monitor changes in the microbial community. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:77. [PMID: 37149601 PMCID: PMC10163780 DOI: 10.1186/s13068-023-02328-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 04/24/2023] [Indexed: 05/08/2023]
Abstract
Birch wood is a potential feedstock for biogas production in Northern Europe; however, the lignocellulosic matrix is recalcitrant preventing efficient conversion to methane. To improve digestibility, birch wood was thermally pre-treated using steam explosion at 220 °C for 10 min. The steam-exploded birch wood (SEBW) was co-digested with cow manure for a period of 120 days in continuously fed CSTRs where the microbial community adapted to the SEBW feedstock. Changes in the microbial community were tracked by stable carbon isotopes- and 16S r RNA analyses. The results showed that the adapted microbial culture could increase methane production up to 365 mL/g VS day, which is higher than previously reported methane production from pre-treated SEBW. This study also revealed that the microbial adaptation significantly increased the tolerance of the microbial community against the inhibitors furfural and HMF which were formed during pre-treatment of birch. The results of the microbial analysis indicated that the relative amount of cellulosic hydrolytic microorganisms (e.g. Actinobacteriota and Fibrobacterota) increased and replaced syntrophic acetate bacteria (e.g. Cloacimonadota, Dethiobacteraceae, and Syntrophomonadaceae) as a function of time. Moreover, the stable carbon isotope analysis indicated that the acetoclastic pathway became the main route for methane production after long-term adaptation. The shift in methane production pathway and change in microbial community shows that for anaerobic digestion of SEBW, the hydrolysis step is important. Although acetoclastic methanogens became dominant after 120 days, a potential route for methane production could also be a direct electron transfer among Sedimentibacter and methanogen archaea.
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Affiliation(s)
- Seyedbehnam Hashemi
- Department of Energy and Process Engineering, Norwegian University of Science and Technology (NTNU), 7034, Trondheim, Norway.
| | - Linn Solli
- Norwegian Institute of Bioeconomy Research (NIBIO), 1433, Ås, Norway
| | - Kristian M Lien
- Department of Energy and Process Engineering, Norwegian University of Science and Technology (NTNU), 7034, Trondheim, Norway
| | - Jacob J Lamb
- Department of Energy and Process Engineering, Norwegian University of Science and Technology (NTNU), 7034, Trondheim, Norway
| | - Svein Jarle Horn
- Norwegian Institute of Bioeconomy Research (NIBIO), 1433, Ås, Norway
- Faculty of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway
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7
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Yu L, Ju CJ, Jing KY, Wang ZY, Niyazi S, Wang Q. The role of anthraquinone-2-sulfonate on intra/extracellular electron transfer of anaerobic nitrate reduction. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 333:117455. [PMID: 36758409 DOI: 10.1016/j.jenvman.2023.117455] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 01/31/2023] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
To improve the electron (e-) transfer efficiency, exogenous redox mediators (RMs) were usually employed to enhance the denitrification efficiency due to the electron shuttling. Previous studies were mainly focused on how to improve the extracellular electron transfer (EET) by exogenous RMs. However, the intracellular electron transfer (IET), another crucial e- transfer pathway, of biological denitrification was scarcely reported, especially for the relationship between the denitrification and IET. In this study, Coenzyme Q, Complexes I, II and III were determined as the core components in the IET chain of denitrification by using four specific respiration chain inhibitors (RCIs). Anthraquinone-2-sulfonate (AQS) partially recovered the IET of denitrification from NO3--N to N2 gas when the RCIs were added. Specifically, the generations of N2 gas were improved by 9.68%-18.25% in the experiments with RCIs and AQS, comparing to that with RCIs. nrfA gene was not detected by reverse transcription-polymerase chain reaction, suggesting that Klebsiella oxytoca strain could not conduct dissimilatory nitrate reduction to ammonium. Nitrate assimilation was considered as the main NH4+-N formation way of K. oxytoca strain. The two e- transfer pathways of denitrification were constructed and the roles of AQS on the IET and EET of denitrification were specifically discussed. The results of this study provided a better understanding of the e- transfer pathways of denitrification, and suggested a potential practical use of exogenous RM on bio-treatment of nitrate-containing wastewater.
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Affiliation(s)
- Lei Yu
- Department of Environmental Engineering, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China; College of Biology and the Environment, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, China
| | - Cheng-Jia Ju
- Department of Environmental Engineering, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China
| | - Kai-Yan Jing
- College of Ecology and Environmental Sciences, East China Normal University, Shanghai, 200241, China
| | - Zi-Yang Wang
- Soil Environment Research Institute, Jiangsu Provincial Academy of Environmental Science, 210003, Nanjing, China
| | - Shareen Niyazi
- Department of Environmental Engineering, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China
| | - Quan Wang
- Department of Environmental Engineering, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China; College of Biology and the Environment, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, China.
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8
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Cruz Viggi C, Tucci M, Resitano M, Palushi V, Crognale S, Matturro B, Petrangeli Papini M, Rossetti S, Aulenta F. Enhancing the Anaerobic Biodegradation of Petroleum Hydrocarbons in Soils with Electrically Conductive Materials. Bioengineering (Basel) 2023; 10:bioengineering10040441. [PMID: 37106628 PMCID: PMC10135592 DOI: 10.3390/bioengineering10040441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 03/24/2023] [Accepted: 03/29/2023] [Indexed: 04/05/2023] Open
Abstract
Anaerobic bioremediation is a relevant process in the management of sites contaminated by petroleum hydrocarbons. Recently, interspecies electron transfer processes mediated by conductive minerals or particles have been proposed as mechanisms through which microbial species within a community share reducing equivalents to drive the syntrophic degradation of organic substrates, including hydrocarbons. Here, a microcosm study was set up to investigate the effect of different electrically conductive materials (ECMs) in enhancing the anaerobic biodegradation of hydrocarbons in historically contaminated soil. The results of a comprehensive suite of chemical and microbiological analyses evidenced that supplementing the soil with (5% w/w) magnetite nanoparticles or biochar particles is an effective strategy to accelerate the removal of selected hydrocarbons. In particular, in microcosms supplemented with ECMs, the removal of total petroleum hydrocarbons was enhanced by up to 50% relative to unamended controls. However, chemical analyses suggested that only a partial bioconversion of contaminants occurred and that longer treatment times would have probably been required to drive the biodegradation process to completion. On the other hand, biomolecular analyses confirmed the presence of several microorganisms and functional genes likely involved in hydrocarbon degradation. Furthermore, the selective enrichment of known electroactive bacteria (i.e., Geobacter and Geothrix) in microcosms amended with ECMs, clearly pointed to a possible role of DIET (Diet Interspecies Electron Transfer) processes in the observed removal of contaminants.
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Affiliation(s)
- Carolina Cruz Viggi
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
| | - Matteo Tucci
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
| | - Marco Resitano
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
| | - Valentina Palushi
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
| | - Simona Crognale
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
- National Biodiversity Future Center, 90133 Palermo, Italy
| | - Bruna Matturro
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
- National Biodiversity Future Center, 90133 Palermo, Italy
| | | | - Simona Rossetti
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
| | - Federico Aulenta
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy
- National Biodiversity Future Center, 90133 Palermo, Italy
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9
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Krohn C, Khudur L, Dias DA, van den Akker B, Rees CA, Crosbie ND, Surapaneni A, O'Carroll DM, Stuetz RM, Batstone DJ, Ball AS. The role of microbial ecology in improving the performance of anaerobic digestion of sewage sludge. Front Microbiol 2022; 13:1079136. [PMID: 36590430 PMCID: PMC9801413 DOI: 10.3389/fmicb.2022.1079136] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 11/28/2022] [Indexed: 12/15/2022] Open
Abstract
The use of next-generation diagnostic tools to optimise the anaerobic digestion of municipal sewage sludge has the potential to increase renewable natural gas recovery, improve the reuse of biosolid fertilisers and help operators expand circular economies globally. This review aims to provide perspectives on the role of microbial ecology in improving digester performance in wastewater treatment plants, highlighting that a systems biology approach is fundamental for monitoring mesophilic anaerobic sewage sludge in continuously stirred reactor tanks. We further highlight the potential applications arising from investigations into sludge ecology. The principal limitation for improvements in methane recoveries or in process stability of anaerobic digestion, especially after pre-treatment or during co-digestion, are ecological knowledge gaps related to the front-end metabolism (hydrolysis and fermentation). Operational problems such as stable biological foaming are a key problem, for which ecological markers are a suitable approach. However, no biomarkers exist yet to assist in monitoring and management of clade-specific foaming potentials along with other risks, such as pollutants and pathogens. Fundamental ecological principles apply to anaerobic digestion, which presents opportunities to predict and manipulate reactor functions. The path ahead for mapping ecological markers on process endpoints and risk factors of anaerobic digestion will involve numerical ecology, an expanding field that employs metrics derived from alpha, beta, phylogenetic, taxonomic, and functional diversity, as well as from phenotypes or life strategies derived from genetic potentials. In contrast to addressing operational issues (as noted above), which are effectively addressed by whole population or individual biomarkers, broad improvement and optimisation of function will require enhancement of hydrolysis and acidogenic processes. This will require a discovery-based approach, which will involve integrative research involving the proteome and metabolome. This will utilise, but overcome current limitations of DNA-centric approaches, and likely have broad application outside the specific field of anaerobic digestion.
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Affiliation(s)
- Christian Krohn
- ARC Training Centre for the Transformation of Australia's Biosolids Resource, RMIT University, Bundoora, VIC, Australia,*Correspondence: Christian Krohn,
| | - Leadin Khudur
- ARC Training Centre for the Transformation of Australia's Biosolids Resource, RMIT University, Bundoora, VIC, Australia
| | - Daniel Anthony Dias
- School of Health and Biomedical Sciences, Discipline of Laboratory Medicine, STEM College, RMIT University, Bundoora, VIC, Australia
| | | | | | | | - Aravind Surapaneni
- ARC Training Centre for the Transformation of Australia's Biosolids Resource, RMIT University, Bundoora, VIC, Australia
| | - Denis M. O'Carroll
- Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW, Australia
| | - Richard M. Stuetz
- Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW, Australia
| | - Damien J. Batstone
- ARC Training Centre for the Transformation of Australia's Biosolids Resource, RMIT University, Bundoora, VIC, Australia,Australian Centre for Water and Environmental Biotechnology, Gehrmann Building, The University of Queensland, Brisbane, QLD, Australia
| | - Andrew S. Ball
- ARC Training Centre for the Transformation of Australia's Biosolids Resource, RMIT University, Bundoora, VIC, Australia
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10
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Chakrawal A, Calabrese S, Herrmann AM, Manzoni S. Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth. Front Microbiol 2022; 13:859063. [PMID: 35656001 PMCID: PMC9152356 DOI: 10.3389/fmicb.2022.859063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 04/07/2022] [Indexed: 11/13/2022] Open
Abstract
Microorganisms function as open systems that exchange matter and energy with their surrounding environment. Even though mass (carbon and nutrients) and energy exchanges are tightly linked, there is a lack of integrated approaches that combine these fluxes and explore how they jointly impact microbial growth. Such links are essential to predicting how the growth rate of microorganisms varies, especially when the stoichiometry of carbon- (C) and nitrogen (N)-uptake is not balanced. Here, we present a theoretical framework to quantify the microbial growth rate for conditions of C-, N-, and energy-(co-) limitations. We use this framework to show how the C:N ratio and the degree of reduction of the organic matter (OM), which is also the electron donor, availability of electron acceptors (EAs), and the different sources of N together control the microbial growth rate under C, nutrient, and energy-limited conditions. We show that the growth rate peaks at intermediate values of the degree of reduction of OM under oxic and C-limited conditions, but not under N-limited conditions. Under oxic conditions and with N-poor OM, the growth rate is higher when the inorganic N (NInorg)-source is ammonium compared to nitrate due to the additional energetic cost involved in nitrate reduction. Under anoxic conditions, when nitrate is both EA and NInorg-source, the growth rates of denitrifiers and microbes performing the dissimilatory nitrate reduction to ammonia (DNRA) are determined by both OM degree of reduction and nitrate-availability. Consistent with the data, DNRA is predicted to foster growth under extreme nitrate-limitation and with a reduced OM, whereas denitrifiers are favored as nitrate becomes more available and in the presence of oxidized OM. Furthermore, the growth rate is reduced when catabolism is coupled to low energy yielding EAs (e.g., sulfate) because of the low carbon use efficiency (CUE). However, the low CUE also decreases the nutrient demand for growth, thereby reducing N-limitation. We conclude that bioenergetics provides a useful conceptual framework for explaining growth rates under different metabolisms and multiple resource-limitations.
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Affiliation(s)
- Arjun Chakrawal
- Department of Physical Geography, Stockholm University, Stockholm, Sweden.,Bolin Centre for Climate Research, Stockholm University, Stockholm, Sweden
| | - Salvatore Calabrese
- Department of Biological and Agricultural Engineering, Texas A&M University, College Station, TX, United States
| | - Anke M Herrmann
- Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Stefano Manzoni
- Department of Physical Geography, Stockholm University, Stockholm, Sweden.,Bolin Centre for Climate Research, Stockholm University, Stockholm, Sweden
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11
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Shekhar Bose R, Chowdhury B, Zakaria BS, Kumar Tiwari M, Ranjan Dhar B. Significance of different mixing conditions on performance and microbial communities in anaerobic digester amended with granular and powdered activated carbon. BIORESOURCE TECHNOLOGY 2021; 341:125768. [PMID: 34469818 DOI: 10.1016/j.biortech.2021.125768] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 08/06/2021] [Accepted: 08/10/2021] [Indexed: 06/13/2023]
Abstract
Conductive materials amendment in anaerobic digestion (AD) is a promising strategy for boosting the methanogenesis process. Despite mixing is a critical parameter, the behavior of digesters amended with conductive additives upon different mixing conditions has rarely been investigated. This study investigated continuous mixing, intermittent mixing (10 min in every 12 h), and non-mixing conditions for digesters amended with granular activated carbon (GAC) and powdered activated carbon (PAC). The non-mixed GAC digester provided the highest methane yield (318 ± 28 mL/g COD) from synthetic blackwater, while intermittently mixed GAC and control exhibited similar methane yields (290-294 mL/g COD). For non-mixed systems, microbial richness and diversity increased with GAC and PAC amendment. In contrast, continuous and intermittent mixing increased microbial diversity and richness in control reactors while reduced the same in GAC and PAC amended reactors. Overall, various mixing conditions distinctly changed the degree of enrichment/retention of microbes and consequently influenced methane recovery.
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Affiliation(s)
- Raj Shekhar Bose
- Civil and Environmental Engineering, University of Alberta, Edmonton AB, Canada; School of Water Resources, Indian Institute of Technology Kharagpur, WB, India
| | - Bappi Chowdhury
- Civil and Environmental Engineering, University of Alberta, Edmonton AB, Canada
| | - Basem S Zakaria
- Civil and Environmental Engineering, University of Alberta, Edmonton AB, Canada
| | - Manoj Kumar Tiwari
- School of Water Resources, Indian Institute of Technology Kharagpur, WB, India
| | - Bipro Ranjan Dhar
- Civil and Environmental Engineering, University of Alberta, Edmonton AB, Canada.
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Feng D, Guo X, Lin R, Xia A, Huang Y, Liao Q, Zhu X, Zhu X, Murphy JD. How can ethanol enhance direct interspecies electron transfer in anaerobic digestion? Biotechnol Adv 2021; 52:107812. [PMID: 34364985 DOI: 10.1016/j.biotechadv.2021.107812] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 07/30/2021] [Accepted: 08/02/2021] [Indexed: 01/25/2023]
Abstract
Anaerobic digestion (AD) of organic waste to produce biogas is a mature biotechnology commercialised for decades. However, the relatively recent discovery of direct interspecies electron transfer (DIET) brings a new opportunity to improve the efficiency of biogas technology. DIET may replace mediated interspecies electron transfer (MIET) by efficient electron transfer between exoelectrogens and electrotrophic methanogens, thereby enhancing yields and rates of biogas production. Ethanol, as the initial electron donor in the discovery of the DIET pathway, is now a "hot topic" in the literature. Recent studies have indicated that ethanol in AD functions not only as the substrate, but also as the precursor to stimulate DIET by enriching exoelectrogens and electrotrophic methanogens for co-digesting complex organic wastes. This review aims to highlight the state of the art and recent advances in ethanol-based DIET in AD. The DIET associated reactions of ethanol oxidation and carbon dioxide reduction are assessed by thermodynamic analysis to reveal the extent of the potential for improvement of the AD processes that utilizes DIET pathways. Three ethanol-based DIET strategies are discussed: (1) ethanol as the sole substrate supplemented with conductive materials in AD, (2) ethanol co-digestion with complex substrates and (3) ethanol-type fermentation prior to AD. This review aims to chart the pathways for improved AD performance by utilizing ethanol-based DIET in specific treatments of biological wastes.
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Affiliation(s)
- Dong Feng
- Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University, Ministry of Education, Chongqing 400044, China; Institute of Engineering Thermophysics, School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China
| | - Xiaobo Guo
- Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University, Ministry of Education, Chongqing 400044, China; Institute of Engineering Thermophysics, School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China
| | - Richen Lin
- MaREI Centre, Environmental Research Institute, University College Cork, Cork, Ireland; Civil, Structural, and Environmental Engineering, School of Engineering and Architecture, University College Cork, Cork, Ireland
| | - Ao Xia
- Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University, Ministry of Education, Chongqing 400044, China; Institute of Engineering Thermophysics, School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China.
| | - Yun Huang
- Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University, Ministry of Education, Chongqing 400044, China; Institute of Engineering Thermophysics, School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China
| | - Qiang Liao
- Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University, Ministry of Education, Chongqing 400044, China; Institute of Engineering Thermophysics, School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China
| | - Xianqing Zhu
- Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University, Ministry of Education, Chongqing 400044, China; Institute of Engineering Thermophysics, School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China
| | - Xun Zhu
- Key Laboratory of Low-grade Energy Utilization Technologies and Systems, Chongqing University, Ministry of Education, Chongqing 400044, China; Institute of Engineering Thermophysics, School of Energy and Power Engineering, Chongqing University, Chongqing 400044, China
| | - Jerry D Murphy
- MaREI Centre, Environmental Research Institute, University College Cork, Cork, Ireland; Civil, Structural, and Environmental Engineering, School of Engineering and Architecture, University College Cork, Cork, Ireland
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13
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Kleerebezem R, Sousa DZ. Editorial overview: Microbial community engineering. Curr Opin Biotechnol 2021; 67:vi-ix. [PMID: 33745678 DOI: 10.1016/j.copbio.2021.02.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Robbert Kleerebezem
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands.
| | - Diana Z Sousa
- Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708WE Wageningen, The Netherlands.
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