1
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Kanouni KE, Benguerba Y, Erto A. Theoretical investigation of the solubility of some antiemetic drugs. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.03.028] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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2
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Zhang B. Unraveling vibrational wavepacket dynamics using femtosecond ion yield spectroscopy and photoelectron imaging. CHINESE J CHEM PHYS 2019. [DOI: 10.1063/1674-0068/cjcp1811252] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Bing Zhang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
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3
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Cesari L, Canabady-Rochelle L, Mutelet F. Computational study of phenolic compounds-water clusters. Struct Chem 2018. [DOI: 10.1007/s11224-018-1081-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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4
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Priya AM, Lakshmipathi S. DFT study on abstraction reaction mechanism of oh radical with 2-methoxyphenol. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3713] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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5
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Young JD, Staniforth M, Dean JC, Roberts GM, Mazzoni F, Karsili TNV, Ashfold MNR, Zwier TS, Stavros VG. Towards Understanding Photodegradation Pathways in Lignins: The Role of Intramolecular Hydrogen Bonding in Excited States. J Phys Chem Lett 2014; 5:2138-2143. [PMID: 26270505 DOI: 10.1021/jz500895w] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The photoinduced dynamics of the lignin building blocks syringol, guaiacol, and phenol were studied using time-resolved ion yield spectroscopy and velocity map ion imaging. Following irradiation of syringol and guaiacol with a broad-band femtosecond ultraviolet laser pulse, a coherent superposition of out-of-plane OH torsion and/or OMe torsion/flapping motions is created in the first excited (1)ππ* (S1) state, resulting in a vibrational wavepacket, which is probed by virtue of a dramatic nonplanar → planar geometry change upon photoionization from S1 to the ground state of the cation (D0). Any similar quantum beat pattern is absent in phenol. In syringol, the nonplanar geometry in S1 is pronounced enough to reduce the degree of intramolecular H bonding (between OH and OMe groups), enabling H atom elimination from the OH group. For guaiacol, H bonding is preserved after excitation, despite the nonplanar geometry in S1, and prevents O-H bond fission. This behavior affects the propensities for forming undesired phenoxyl radical sites in these three lignin chromophores and provides important insight into their relative "photostabilities" within the larger biopolymer.
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Affiliation(s)
- Jamie D Young
- †Department of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, United Kingdom
| | - Michael Staniforth
- †Department of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, United Kingdom
| | - Jacob C Dean
- §Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| | - Gareth M Roberts
- †Department of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, United Kingdom
| | - Federico Mazzoni
- ‡Lens, Polo Scientifico e Tecnologico dell'Universitá di Firenze, Via Nello Carrara 1, 50019 Sesto Fiorentino, Florence, Italy
- ⊥Dipartimento di Chemica, Polo Scientifico e Tecnologico dell'Universitá di Firenze, Via della Lastruccia 3, 50019 Sesto Fiorentino, Florence, Italy
| | - Tolga N V Karsili
- #School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom
| | - Michael N R Ashfold
- #School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom
| | - Timothy S Zwier
- §Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, United States
| | - Vasilios G Stavros
- †Department of Chemistry, University of Warwick, Library Road, Coventry CV4 7AL, United Kingdom
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Dean JC, Navotnaya P, Parobek AP, Clayton RM, Zwier TS. Ultraviolet spectroscopy of fundamental lignin subunits: guaiacol, 4-methylguaiacol, syringol, and 4-methylsyringol. J Chem Phys 2014; 139:144313. [PMID: 24116625 DOI: 10.1063/1.4824019] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Ultraviolet spectroscopy of the G- and S-type lignin subunits, guaiacol (G) and syringol (S), along with their para-methylated derivatives 4-methylguaiacol (4-MG) and 4-methylsyringol (4-MS), has been carried out in the cold, isolated environment of a supersonic jet. The excitation spectra and dispersed fluorescence (DFL) spectra of G and 4-MG show strong S0-S1 origins and Franck-Condon activity involving both the ring modes typical of aromatic derivatives, and the four lowest frequency out-of-plane modes (a") and lowest in-plane mode (a') involving the OH and OCH3 groups. The four low-frequency out-of-plane modes undergo extensive Duschinsky mixing between the ground and excited state. In 4-MG, combination bands involving methyl rotor levels with out-of-plane modes appeared with surprisingly high intensity, indicating a high degree of hindered rotor-vibration coupling in both S0 and S1. These mixing effects accompany the change in geometry upon π-π∗ electronic excitation going from a planar ground state to a non-planar excited state. Time-dependent density functional theory (TDDFT M05-2X∕6-311++G(d,p)) calculations predict a geometric distortion along the out-of-plane oxygen flapping coordinate, yielding a double minimum potential in S1 with a barrier to planarity of 195 cm(-1) in G. The excitation spectrum of S and 4-MS showed a much higher degree of spectral congestion and a larger geometry change evident by a shifted intensity distribution peaking ∼300 cm(-1) above the electronic origin. TDDFT calculations predict a larger geometry change in S compared with G, with the OH and H-bonded methoxy groups displaced in opposite directions above∕below the ring plane. Dispersed fluorescence from all S1 excited state levels in S∕4-MS yield only broad emission peaking far to the red of the excitation wavelength (-4500 cm(-1)). Several hypotheses regarding the source of this broad, redshifted emission were tested, but the cause remains unclear. p-Methylation was found to significantly redshift the UV absorption in both 4-MG and 4-MS, and methyl rotor transitions were assigned in both allowing for the determination of the shape and barrier heights of their respective potentials. These results provide a foundation for the discrimination of G- and S-chromophores in lignin oligomers, and demonstrate the potential for site-selective absorption.
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Affiliation(s)
- Jacob C Dean
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907-2084, USA
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7
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Shivatare V, Tzeng WB. Spectroscopic Investigation of cis-2,4-Difluorophenol Cation by Mass-analyzed Threshold Ionization Spectroscopy. B KOREAN CHEM SOC 2014. [DOI: 10.5012/bkcs.2014.35.3.815] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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8
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Dean JC, Walsh PS, Biswas B, Ramachandran PV, Zwier TS. Single-conformation UV and IR spectroscopy of model G-type lignin dilignols: the β–O–4 and β–β linkages. Chem Sci 2014. [DOI: 10.1039/c3sc53260g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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9
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Campo-Cacharrón A, Cabaleiro-Lago EM, Rodríguez-Otero J. Effects of microhydration on the characteristics of cation–phenol complexes. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1290-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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10
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Effect of stepwise microhydration on the methylammonium···phenol and ammonium···phenol interaction. J Mol Model 2012; 19:1985-94. [DOI: 10.1007/s00894-012-1579-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2012] [Accepted: 08/21/2012] [Indexed: 10/27/2022]
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11
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Krupa J, Olbert-Majkut A, Reva I, Fausto R, Wierzejewska M. Ultraviolet-Tunable Laser Induced Phototransformations of Matrix Isolated Isoeugenol and Eugenol. J Phys Chem B 2012; 116:11148-58. [DOI: 10.1021/jp306339g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. Krupa
- Faculty of Chemistry, University of Wrocław, Joliot-Curie 14, 50-383
Wrocław, Poland
| | - A. Olbert-Majkut
- Faculty of Chemistry, University of Wrocław, Joliot-Curie 14, 50-383
Wrocław, Poland
| | - I. Reva
- Department of Chemistry, University of Coimbra, 3004-535 Coimbra,
Portugal
| | - R. Fausto
- Department of Chemistry, University of Coimbra, 3004-535 Coimbra,
Portugal
| | - M. Wierzejewska
- Faculty of Chemistry, University of Wrocław, Joliot-Curie 14, 50-383
Wrocław, Poland
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12
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Varfolomeev MA, Abaidullina DI, Solomonov BN, Verevkin SP, Emel’yanenko VN. Pairwise Substitution Effects, Inter- and Intramolecular Hydrogen Bonds in Methoxyphenols and Dimethoxybenzenes. Thermochemistry, Calorimetry, and First-Principles Calculations. J Phys Chem B 2010; 114:16503-16. [DOI: 10.1021/jp108459r] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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13
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Cabaleiro-Lago EM, Peña-Gallego Á, Rodríguez-Otero J. Study of the interaction in clusters formed by phenol and CH3X (X=CN,F,Cl) molecules. J Chem Phys 2008; 128:194311. [DOI: 10.1063/1.2919128] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
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15
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Szydłowska I, Nosenko Y, Brutschy B, Tarakeshwar P, Herbich J. Supersonic jet studies of solvation effects on the spectroscopy and photophysics of 4-diethylaminopyridine. Phys Chem Chem Phys 2007; 9:4981-91. [PMID: 17851594 DOI: 10.1039/b705532c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
We present the results of spectroscopic and photophysical investigations of 4-diethylaminopyridine (DEAP) and its 1 : 1 complexes with a number of protic solvents such as water and various alcohols of different acidity isolated under supersonic jet conditions. While a double resonance vibrational spectroscopic method was employed to investigate the size and geometrical structure of jet-cooled clusters, laser-induced fluorescence spectroscopy was used to examine the changes of photophysics induced by complexation of DEAP with solvent molecule(s). The results obtained from ab initio calculations enable the assignment of geometries and of the vibrational spectra of the clusters in the OH-stretch region. The comparison of the experimental and calculated vibrational spectra indicates that the solvent molecule is hydrogen-bonded to the pyridine nitrogen atom. Dual luminescence is observed only for the complexes with alcohols of relatively strong acidity.
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Affiliation(s)
- Izabela Szydłowska
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
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16
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Yuan L, Li C, Lin JL, Yang SC, Tzeng WB. Mass analyzed threshold ionization spectroscopy of o-fluorophenol and o-methoxyphenol cations and influence of the nature and relative location of substituents. Chem Phys 2006. [DOI: 10.1016/j.chemphys.2005.10.004] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Borho N, Suhm MA, Le Barbu-Debus K, Zehnacker A. Intra- vs. intermolecular hydrogen bonding: dimers of alpha-hydroxyesters with methanol. Phys Chem Chem Phys 2006; 8:4449-60. [PMID: 17001413 DOI: 10.1039/b609725a] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Intermolecular hydrogen bonding competes with an intramolecular hydrogen bond when methanol binds to an alpha-hydroxyester. Disruption of the intramolecular OH...O=C contact in favour of a cooperative OH...OH...O=C sequence is evidenced by FTIR spectroscopy for the addition of methanol to the esters methyl glycolate, methyl lactate and methyl alpha-hydroxyisobutyrate in seeded supersonic jet expansions. Comparison of the OH stretching modes with quantum-chemical harmonic frequency calculations and 18O labelling of methanol unambiguously prove the insertion of methanol into the intramolecular hydrogen bond. This is in marked contrast to UV/IR hole burning studies of the homologous system methyl lactate: (+/-)-2-naphthyl-1-ethanol, where only addition complexes were found and the intramolecular hydrogen bond was conserved. This switch in hydrogen bond pattern from aliphatic to aromatic heterodimers is thought to reflect not only a kinetic propensity but also a thermodynamic preference for addition complexes when dispersion forces become more important in aromatic systems.
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Affiliation(s)
- Nicole Borho
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstr. 6, 37077, Göttingen, Germany
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18
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Using experimental studies and theoretical calculations to analyze the molecular mechanism of coumarin, p-hydroxybenzoic acid, and cinnamic acid. J Mol Struct 2005. [DOI: 10.1016/j.molstruc.2005.02.009] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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19
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Longarte A, Redondo C, Fernández JA, Castaño F. IR/UV and UV/UV double-resonance study of guaiacol and eugenol dimers. J Chem Phys 2005; 122:164304. [PMID: 15945681 DOI: 10.1063/1.1881232] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Guaiacol (2-methoxyphenol) and eugenol (4-allyl-2-methoxyphenol) molecules are biologically active phenol derivatives with an intramolecular -OH...OCH3 hydrogen bond (H bond). Pulsed supersonic expansions of mixtures of either of the two molecules with He yield weakly bound homodimers as well as other higher-order complexes. A number of complementary and powerful laser spectroscopic techniques, including UV-UV and IR-UV double resonances, have been employed to interrogate the species formed in the expansion in order to get information on their structures and spectroscopic properties. The interpretation of the spectra of eugenol dimer is complex and required a previous investigation on a similar but simpler molecule both to gain insight into the possible structures and support the conclusions. Guaiacol (2-methoxyphenol) has been used for that purpose. The combination of the broad laser study combined with ab initio calculations at the Becke 3 Lee-Yang-Parr/6-31+Gd level has provided the isomer structures, the potential-energy wells, and shed light on the inter- and intramolecular interactions involved. Guaiacol homodimer has been shown to have a single isomer whereas eugenol dimer has at least two. The comparison between the computed geometries of the dimers, their respective energies, and the vibrational normal modes permits the identification of the spectra.
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Affiliation(s)
- Asier Longarte
- Departamento de Química-Física, Facultad de Ciencia y Tecnologia, Universidad del País Vasco, Apartado 644, 48080 Bilbao, Spain
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Bandyopadhyay I, Lee HM, Kim KS. Phenol vs Water Molecule Interacting with Various Molecules: σ-type, π-type, and χ-type Hydrogen Bonds, Interaction Energies, and Their Energy Components. J Phys Chem A 2005; 109:1720-8. [PMID: 16833497 DOI: 10.1021/jp0449657] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The nature of interactions of phenol with various molecules (Y = HF, HCl, H2O, H2S, NH3, PH3, MeOH, MeSH) is investigated using ab initio calculations. The optimized geometrical parameters and spectra for the global energy minima of the complexes match the available experimental data. The contribution of attractive (electrostatic, inductive, dispersive) and repulsive (exchange) components to the binding energy is analyzed. HF favors sigma O-type H-bonding, while H2O, NH3, and MeOH favor sigma H-type H-bonding, where sigma O-/sigma H-type is the case when a H-bond forms between the phenolic O/H atom and its interacting molecule. On the other hand, HCl, H2S, and PH3 favor pi-type H-bonding, which are slightly favored over sigma O-, sigma H-, sigma H-type bonding, respectively. MeSH favors chi H-type bonding, which has characteristics of both pi and sigma H. The origin of these conformational preferences depending on the type of molecules is elucidated. Finally, phenol-Y complexes are compared with water-Y complexes. In the water-Y complexes where sigma O/sigma H-type involves the H-bond by the water O/H atom, HF and HCl favor sigma O-type, H2O involves both sigma O-/sigma H-type, and H2S, NH3, PH3, MeOH, and MeSH favor sigma H-type bonding. Except for HF, seven other species have larger binding energies with a phenol molecule than a water molecule.
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Affiliation(s)
- Indrajit Bandyopadhyay
- National Creative Research Initiative Center for Superfunctional Materials, Department of Chemistry, Division of Molecular and Life Science, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
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Parthasarathi R, Subramanian V, Sathyamurthy N. Hydrogen Bonding in Phenol, Water, and Phenol−Water Clusters. J Phys Chem A 2005; 109:843-50. [PMID: 16838955 DOI: 10.1021/jp046499r] [Citation(s) in RCA: 137] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Structure, stability, and hydrogen-bonding interaction in phenol, water, and phenol-water clusters have been investigated using ab initio and density functional theoretical (DFT) methods and using various topological features of electron density. Calculated interaction energies at MP2/6-31G level for clusters with similar hydrogen-bonding pattern reveal that intermolecular interaction in phenol clusters is slightly stronger than in water clusters. However, fusion of phenol and water clusters leads to stability that is akin to that of H(2)O clusters. The presence of hydrogen bond critical points (HBCP) and the values of rho(r(c)) and nabla(2)rho(r(c)) at the HBCPs provide an insight into the nature of closed shell interaction in hydrogen-bonded clusters. It is shown that the calculated values of total rho(r(c)) and nabla(2)rho(r(c)) of all the clusters vary linearly with the interaction energy.
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Affiliation(s)
- R Parthasarathi
- Chemical Laboratory, Central Leather Research Institute, Adyar, Chennai, India
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22
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Wu R, Brutschy B. Infrared Depletion Spectroscopy and Structure of the 2-Aminopyridine Dimer. J Phys Chem A 2004. [DOI: 10.1021/jp048505p] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Ronghu Wu
- Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe-Universität Frankfurt, Marie-Curie-Str. 11, D-60439 Frankfurt am Main, Germany
| | - Bernhard Brutschy
- Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe-Universität Frankfurt, Marie-Curie-Str. 11, D-60439 Frankfurt am Main, Germany
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