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Krupová M, Leszczenko P, Sierka E, Emma Hamplová S, Pelc R, Andrushchenko V. Vibrational Circular Dichroism Unravels Supramolecular Chirality and Hydration Polymorphism of Nucleoside Crystals. Chemistry 2022; 28:e202201922. [DOI: 10.1002/chem.202201922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Indexed: 11/07/2022]
Affiliation(s)
- Monika Krupová
- Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
- Hylleraas Centre for Quantum Molecular Sciences Department of Chemistry UiT The Arctic University of Norway N-9037 Tromsø Norway
| | - Patrycja Leszczenko
- Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30-387 Kraków Poland
| | - Ewa Sierka
- Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30-387 Kraków Poland
| | - Sára Emma Hamplová
- Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
- Department of Biology and Biochemistry University of Bath Claverton Down Bath BA2 7AY United Kingdom
| | - Radek Pelc
- Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
- Third Faculty of Medicine Charles University Ruská 87 10000 Prague Czech Republic
| | - Valery Andrushchenko
- Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
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2
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Guo Y, Li X, Ma J, Phillips DL. Reaction Mechanisms of Photoinduced Quinone Methide Intermediates Formed via Excited-State Intramolecular Proton Transfer or Water-Assisted Excited-State Proton Transfer of 4-(2-Hydroxyphenyl)pyridine. J Phys Chem Lett 2021; 12:11666-11672. [PMID: 34825824 DOI: 10.1021/acs.jpclett.1c03600] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Femtosecond and nanosecond transient absorption spectroscopies combined with theoretical calculations were performed to investigate the formation mechanisms of quinone methides (QMs) from 4-(2-hydroxyphenyl)pyridine (1). In acetonitrile (ACN), the singlet excited state of 1 (1(S1)) with the cis-form underwent a thermodynamically favorable and ultrafast ESIPT to produce the singlet excited state QM, which could either relax first into highly vibrational states of its ground state followed by hydrogen transfer to return to the starting compound or alternatively may undergo a dehydrogenation to produce a radical species (1-R). In ACN-H2O, 1(S1) interacted with water molecules to form a solvated species, which induced water-assisted ESPT to the pyridine nitrogen to generate the singlet excited state QM in a concerted asynchronous manner that was initiated by deprotonation of the phenolic OH. These results provide deeper insights into the formation mechanisms of QMs in different solvent environments, which is important in the application of QMs in biological and chemical systems as well as in the design of molecules for efficient QM formation.
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Affiliation(s)
- Yan Guo
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an 710127, P. R. China
| | - Xuyang Li
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an 710127, P. R. China
| | - Jiani Ma
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an 710127, P. R. China
| | - David Lee Phillips
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong 999077, P. R. China
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Intermolecular interactions in microhydrated ribonucleoside and deoxyribonucleoside: A computational study. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113422] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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4
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Li J, Zhang M, Du C, Song P, Li X. A theoretical study on excited state proton transfer in 2-(2′-dihydroxyphenyl) benzoxazole. J PHYS ORG CHEM 2018. [DOI: 10.1002/poc.3867] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Jia Li
- Key Laboratory for Anisotropy and Texture of Materials (Ministry of Education), School of Materials; Northeastern University; Shenyang Liaoning China
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Meixia Zhang
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Can Du
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Peng Song
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Xiaodong Li
- Key Laboratory for Anisotropy and Texture of Materials (Ministry of Education), School of Materials; Northeastern University; Shenyang Liaoning China
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Lu X, Zhai Y, Zhang M, Song Y. A theoretical study on the ESPT mechanism for a novel Bis-HPBT fluorophore. J PHYS ORG CHEM 2018. [DOI: 10.1002/poc.3821] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Xuemei Lu
- School of Metallurgy; Northeastern University; Shenyang China
| | - Yuchuan Zhai
- School of Metallurgy; Northeastern University; Shenyang China
| | - Meixia Zhang
- Department of Physics; Liaoning University; Shenyang China
| | - Yuzhi Song
- College of Physics and Electronics; Shandong Normal University; Jinan China
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6
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Qiao N, Wei NN, Zhang J, Hao C. The dual-luminescence mechanism of the ESIPT chemosensor tetrasubstituted imidazole core compound: a TDDFT study. NEW J CHEM 2018. [DOI: 10.1039/c8nj01162a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The dual-luminescence mechanism of the tetrasubstituted imidazole core (TIC) compound was theoretically explored by considering the excited-state intramolecular proton transfer (ESIPT) process in the present study.
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Affiliation(s)
- Na Qiao
- School of Life Science and Medicine
- Dalian University of Technology
- Panjin 124221
- P. R. China
| | - Ning-Ning Wei
- School of Life Science and Medicine
- Dalian University of Technology
- Panjin 124221
- P. R. China
| | - Jianing Zhang
- School of Life Science and Medicine
- Dalian University of Technology
- Panjin 124221
- P. R. China
| | - Ce Hao
- State Key Laboratory of Fine Chemicals
- School of Petroleum and Chemical Engineering
- Dalian University of Technology
- Panjin 124221
- P. R. China
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7
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Yang D, Yang G, Zhao J, Song N, Zheng R, Wang Y. Solvent controlling excited state proton transfer reaction in quinoline/isoquinoline-pyrazole isomer QP-I: A theoretical study. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3729] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Dapeng Yang
- College of Mathematics and Information Science; North China University of Water Resources and Electric Power; Zhengzhou China
- Department of Basic Science; Jiaozuo University; Jiaozuo China
| | - Guang Yang
- Department of Basic Science; Jiaozuo University; Jiaozuo China
| | - Jinfeng Zhao
- State Key Laboratory of Molecular Reaction Dynamics, Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics; Chinese Academy of Sciences; Dalian China
| | - Nahong Song
- College of Computer and Information Engineering; Henan University of Economics and Law; Zhengzhou China
| | - Rui Zheng
- College of Mathematics and Information Science; North China University of Water Resources and Electric Power; Zhengzhou China
| | - Yusheng Wang
- College of Mathematics and Information Science; North China University of Water Resources and Electric Power; Zhengzhou China
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Zhang M, Zhou Q, Zhang M, Dai Y, Song P, Jiang Y. Theoretical Investigation of the ESIPT Mechanism for the 1-Hydroxy-9H-fluoren-9-one and 1-Hydroxy-11H-benzo[b]fluoren-11-one Chromophores. J CLUST SCI 2016. [DOI: 10.1007/s10876-016-1122-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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9
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Li H, Liu Y, Yang Y, Yang D, Sun J. Excited-state intramolecular hydrogen bonding of compounds based on 2-(2-hydroxyphenyl)-1,3-benzoxazole in solution: a TDDFT study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 133:818-824. [PMID: 25000569 DOI: 10.1016/j.saa.2014.06.072] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Revised: 04/25/2014] [Accepted: 06/01/2014] [Indexed: 06/03/2023]
Abstract
The excited-state properties of intramolecular hydrogen bonding in the compounds based on 2-(2-hydroxyphenyl)-1,3-benzoxazole (6 and its tautomers 6a and 6b) have been investigated using theoretical methods. According to the geometric optimization and IR spectra in the ground and excited states calculated by density functional theory (DFT) and time-dependent DFT (TD-DFT) methods respectively, the type of intramolecular hydrogen bonding N⋯HO in 6 and 6a is demonstrated to be significantly strengthened, while NH⋯O in the tautomers 6a and 6b are proved to be sharply weakened upon excitation to excited state S1. The calculated absorption peaks of 6 are in good accordance with the experimental results. Moreover, other compounds based on 6 that R1 and R2 are both substituted as well as that only R1 is substituted are investigated to understand the effect of substituent on intramolecular hydrogen bonding. It is found that the hydrogen bond strength can be controlled by the inductive field effect of the substituent. In addition, the intramolecular charge transfers (ICT) of the S1 state for 6 and its tautomers 6a and 6b were theoretically investigated by analyses of molecular orbital.
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Affiliation(s)
- Hui Li
- Department of Physics, Henan Normal University, Xinxiang 453007, China
| | - Yufang Liu
- Department of Physics, Henan Normal University, Xinxiang 453007, China.
| | - Yonggang Yang
- Department of Physics, Henan Normal University, Xinxiang 453007, China
| | - Dapeng Yang
- Physics Laboratory, North China University of Water Resources and Electric Power, Zhengzhou 450045, China
| | - Jinfeng Sun
- Department of Physics, Henan Normal University, Xinxiang 453007, China
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Li H, Liu Y, Yang Y, Yang D, Sun J. Influences of hydrogen bonding dynamics on adsorption of ethyl mercaptan onto functionalized activated carbons: A DFT/TDDFT study. J Photochem Photobiol A Chem 2014. [DOI: 10.1016/j.jphotochem.2014.06.017] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Li H, Yang Y, Yang D, Liu Y, Sun J. TDDFT study on the excited-state hydrogen bonding of N-(2-hydroxyethyl)-1,8-naphthalimide and N-(3-hydroxyethyl)-1,8-naphthalimide in methanol solution. J PHYS ORG CHEM 2014. [DOI: 10.1002/poc.3255] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Hui Li
- Department of physics; He Nan Normal University; Xinxiang Henan 453007 China
| | - Yonggang Yang
- Department of physics; He Nan Normal University; Xinxiang Henan 453007 China
| | - Dapeng Yang
- Department of physics; He Nan Normal University; Xinxiang Henan 453007 China
| | - Yufang Liu
- Department of physics; He Nan Normal University; Xinxiang Henan 453007 China
| | - Jinfeng Sun
- Department of physics; He Nan Normal University; Xinxiang Henan 453007 China
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Cheng J, Liu D. Time-dependent density functional theory study on the electronic excited-state hydrogen bonding dynamics of BHC-nicotinamide in MeOH solution. CAN J CHEM 2013. [DOI: 10.1139/cjc-2012-0393] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The density functional theory (DFT) and time-dependent density functional theory (TDDFT) methods were performed to investigate the electronic excited-state hydrogen bonding dynamics of the hydrogenbonded complex formed by BHC-nicotinamide (BHCN) and methanol (MeOH). The ground-state geometry optimizations, electronic transition energies, corresponding oscillation strengths of the low-lying electronically excited states, and the optimized S1 excited-state geometry for the isolated BHCN and MeOH monomers, the hydrogen-bonded BHCN–MeOH dimers, and BHCN–2MeOH trimer complexes have been calculated by using the DFT and TDDFT methods, respectively. We have demonstrated that the intermolecular hydrogen bond C10=O14···H40−O39−Me is weaker than C16=O17···H46−O45−Me in the hydrogen-bonded dimers and trimer no matter whether in the ground state or the excited state. In addition, our results are consistent with the relationship between the electronic spectral shifts and excited-state hydrogen bonding dynamics: hydrogen bond strengthening can induce the relative electronic spectra redshift, whereas a blueshift will be induced. In addition, we focused our attention on the frontier molecular orbital and the results could reasonably explain the hydrogen bond strengthening or weakening mechanism.
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Affiliation(s)
- Jinling Cheng
- State Key Laboratory of Fine Chemicals, School of Chemistry, Dalian University of Technology, 2 Linggong Road, Dalian, 116024, China
| | - Di Liu
- State Key Laboratory of Fine Chemicals, School of Chemistry, Dalian University of Technology, 2 Linggong Road, Dalian, 116024, China
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A theoretical study on the red- and blue-shift hydrogen bonds of cis-trans formic acid dimer in excited states. OPEN CHEM 2013. [DOI: 10.2478/s11532-012-0143-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
AbstractThe excited states of cis-trans formic acid dimer and its monomers have been investigated by time-dependent density functional theory (TDDFT) method. The formation of intermolecular hydrogen bonds O1-H1...O2=C2 and C2-H2...O4=C1 induces bond length lengthening of the groups related to the hydrogen bond, while that of the C2-H2 group is shortened. It is demonstrated that the red-shift hydrogen bond O1-H1...O2=C2 and blue-shift hydrogen bond C2-H2...O4=C1 are both weakened when excited to the S1 state. Moreover, it is found that the groups related to the formation of red-shift hydrogen bond O1-H1...O2=C2 are both strengthened in the S1 state, while the groups related to the blue-shift hydrogen bond C2-H2...O4=C1 are both weakened. This will provide information for the photochemistry and photophysical study of red- and blue-shift hydrogen bond.
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14
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Yang DP, Li H, Liu YF. A TD-DFT Study on the Effect of Intermolecular Hydrogen Bonding on the Photophysical Properties of N-Methyl-1,8-naphthalimide. J CHIN CHEM SOC-TAIP 2012. [DOI: 10.1002/jccs.201200353] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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