Complex modes of bonding: NCI/ELI-D vs. DORI surface analyses of hapticities and hydrogen–hydrogen contacts in zincocene related compounds

Can H2 be Superacidic? A Computational Study of Triel-Bonded Brønsted Acids

The abundance of XIII group element compounds in science and industry together with their electron-deficient character gives rise to their influence on properties of the systems they interact with. This paper is an attempt to assess the strength, nature, and effect of formation of a triel bond on acidity. A wide set of Brønsted acids among others comprising hydrocarbons, halogen hydrides, and amines bonded with B, Al, and Ga trifluorides forming HX/TF3 was selected for the research. Various computational approaches (e.g., MP2, GFN2-xTB, SAPT2 + 3(CCD)δMP2, quantum theory of atoms in molecules analysis, and density overlap regions indicator) are used to describe the triel-bonded systems. Among other things, it was found that the electrostatics may not be the dominant contribution to the triel binding in some cases. Additionally, it was established that even weak Brønsted acids such as C2H2 or H2 may be superacidic if bonded to a Lewis acid (TF3) that is strong enough. The calculations indicate a significant covalent character of some of the studied HX/TF3 triel-bonded systems. Moreover, the effect of solvation of HX with TF3 as well as that of the reverse process on the acidity of the resulting system is thoroughly described.

Coordination Behavior of the Tellurium Incorporated Mercuraazametallamacrocycle and Investigation of d10 ⋅⋅⋅d10 Interactions between Closed Shell (Ag+ Hg2+ ) Metal Ions

Herein, a new tellurium and mercury containing mercuraazametallamacrocycle has been prepared via (2+2) condensation of bis(o-aminophenyl)telluride and bis(o-formylphenyl)mercury(II). The isolated bright yellow solid of mercuraazametallamacrocycle has adopted unsymmetrical figure-of-eight conformation in the crystal structure. To study the metallophilic interactions between closed shell metal ions, the macrocyclic ligand has been treated with two equiv. of AgOTf (OTf=trifluoromethansulfonate) and AgBF4 , which afforded greenish-yellow bimetallic silver complexes. The isolated silver complexes displayed intramolecular Hg⋅⋅⋅Ag, Te⋅⋅⋅Ag interactions as well as intermolecular Hg⋅⋅⋅Hg interactions and formed an extended 1D molecular chain by directing six atoms to interact as TeII ⋅⋅⋅AgI ⋅⋅⋅HgII ⋅⋅⋅HgII ⋅⋅⋅AgI ⋅⋅⋅TeII in a non linear fashion. The Hg⋅⋅⋅Ag, Te⋅⋅⋅Ag interactions have also been studied in solution by 199 Hg, 125 Te NMR spectroscopy, absorption, and emission spectroscopy. In DFT calculations, the Atom in Molecule (AIM) analysis, non-covalent interactions (NCI), natural bonding orbital (NBO) analysis strongly supported for experimental evidences and revealed that the intermolecular Hg⋅⋅⋅Hg interaction is stronger than the intramolecular Hg⋅⋅⋅Ag interactions.

In Silico Partial N2 to NH3 Conversion with a Light Atom Molecule

N₂ can be stepwise converted in silico into one molecule NH₃ and a secondary amide with a bond activator molecule consisting only of light main group elements. The proposed N₂ -activating pincer-related compound carries a silyl ion (Si⁽⁺⁾ ) center as well as three Lewis acidic (-BF₂ ) and three Lewis basic (-PMe₂ ) sites, providing an efficient binding pocket for gaseous N₂ within the framework of intramolecular frustrated Lewis pairs (FLP). In addition, it exhibits supportive secondary P-B and F⋅⋅⋅B contacts, which stabilize the structure. In the PSi⁽⁺⁾ -N-N-BP environment the N≡N triple bond is extended from 1.09 Å to remarkable 1.43 Å, resembling a N-N single bond. The strongly activated N-N-fragment is prone to subsequent hydride addition and protonation steps, resulting in the energy efficient transfer of two hydrogen equivalents. The next hydride added causes the release of one molecule NH₃ , but leaves the ligand system as poisoned R₃ Si⁽⁺⁾ -NH₂ -PMe₂ or R₃ Si⁽⁺⁾ -NH₃ dead-end states behind. The study indicates that approximately tetrahedral constrained SiBP₂ -pockets are capable to activate N₂ , whereas the acid-rich SiB₃ - and SiB₂ P-pocktes, as well as the base-rich SiP₃ -pockets fail, hinting towards the high relevance of the acid-base proportion and relative orientation. The electronic structure of the N₂ -activated state is compared to the corresponding state of a recently published peri-substituted bond activator molecule featuring a PSi⁽⁺⁾ -N-N-Si⁽⁺⁾ P site (S. Mebs, J. Beckmann, Physical Chemistry Chemical Physics 2022, 24, 20953-20967).

In silico activation of dinitrogen with a light atom molecule

The NN triple bond can be cleaved in silico with a light atom molecule containing only the earth abundant elements C, H, Si, and P. Extensive density functional theory (DFT) computations on various classes of peri-substituted scaffolds containing Lewis acidic and basic sites in the framework of frustrated Lewis pairs (FLP) indicate that the presence of two silyl cations and two P atoms in a flexible but not too flexible arrangement is essential for energy efficient N₂-activation. The non-bonding lone-pair electrons of the P atoms thereby serve as donors towards N₂, whereas the lone-pairs of N₂ donate into the silyl cations. Newly formed lone-pair basins in the N₂-adducts balance surplus charge. Thereby, the N-N bond distance is increased by astonishing 0.3 Å, from 1.1 Å in N₂ gas to 1.4 Å in the adduct, which makes this bond prone to subsequent addition of hydride ions and protonation, forming two secondary amine sites in the process and eventually breaking the NN triple bond. Potential formation of dead-end states, in which the dications ("active states") aversively form a Lewis acid (LA)-Lewis base (LB) bond, or in which the LA and LB sites are too far away from each other to be able to capture N₂, are problematic but might be circumvented by proper choice of spacer molecules, such as acenaphthalene or biphenylene, and the ligands attached to the LA and LB atoms, such as phenyl or mesityl, and by purging the reaction solutions with gaseous N₂ in the initial reaction steps. Charge redistributions via N₂-activation and splitting were monitored by a variety of real-space bonding indicators (RSBIs) derived from the calculated electron and electron pair densities, which provided valuable insight into the bonding situation within the different reaction steps.

Nickel and Palladium Complexes of a PP(O)P Pincer Ligand Based upon a peri-Substituted Acenaphthyl Scaffold and a Secondary Phosphine Oxide

A PP(O)P pincer ligand based upon a peri-substituted acenaphthyl (Ace) scaffold and a secondary phosphine oxide, (5-Ph₂P-Ace-6-)₂P(O)H, was prepared and fully characterized including a neutron diffraction study. The reaction with [Ni(H₂O)₆]Cl₂ and PdCl₂ produced ionic metal(II) complexes [κ³-P,P',P''((5-Ph₂P-Ace-6-)₂P(OH))MCl]Cl, which upon addition of Et₃N gave rise to zwitterionic metal(II) complexes κ³-P,P',P''((5-Ph₂P-Ace-6-)₂P(O))MCl (M = Ni, Pd). The reaction with Ni(COD)₂ (COD = cyclooctadiene) provided the η³-cyclooctenyl Ni(II) complex κ³-P,P',P''((5-Ph₂P-Ace-6-)₂P(O))Ni(η³-C₈H₁₃). A detailed complementary bonding analysis of the P-H, P-O, and P-M interactions was carried out (M = Ni, Pd).

Heavier Bis(m-terphenyl)element phosphaethynolates of Group 13

The synthesis and reactivity of the heavier group 13 phosphaketene complexes (2,6-Mes2C6H3)2EPCO (1, E = Ga; 2, E = In) were reported. The reaction of 1 and 2 with 1,2,3,4-tetramethylimidazolin-2-ylidene,...

Synthesis, Structure and Bonding Analysis of the Zwitterionic PPP-Pincer Complex (6-Ph2P-Ace-5-)2P(O)AuCl2

The reaction of (6-Ph2P-Ace-5-)2P(O)H with (tht)AuCl3 proceeds via elimination of tetrahydrothiophene (tht) and HCl, providing the zwitterionic PPP-pincer complex (6-Ph2P-Ace-5-)2P(O)AuCl2 (1) as yellow crystals. The molecular structure of 1 was established and studied by X-ray crystallography. The electronic structure was computationally analyzed using a comprehensive set of real-space bonding indicators derived from electron and electron-pair densities, providing insight into the relative contributions of covalent and non-covalent forces to the polar-covalent Au–Cl, Au–P, and P–O− bonds; the latter being one of the textbook cases for strongly polarized covalent interactions. Partial spatial complementarity between both bonding aspects is suggested by the electronic properties of the distinctively different Au–Cl bonds.

The reaction of phenoxatellurine with single-electron oxidizers revisited

Baking Pancakes: Dicationic products of the single-electron oxidation of phenoxatellurine.

Transmetallation of bis(6-diphenylphosphinoxy-acenapth-5-yl)mercury with tin tetrachloride, antimony trichloride and bismuth trichloride

The synthesis and structure of well-defined arylelement chlorides RSnCl₄, RSnCl₃·THF, RSbCl₂, RSbCl₂·THF and RBiCl₂ is reported (R = 6-diphenylphosphinoxy-acenapth-5-yl).

Theory and practice of modeling van der Waals interactions in electronic-structure calculations

The accurate description of long-range electron correlation, most prominently including van der Waals (vdW) dispersion interactions, represents a particularly challenging task in the modeling of molecules and materials. vdW forces arise from the interaction of quantum-mechanical fluctuations in the electronic charge density. Within (semi-)local density functional approximations or Hartree-Fock theory such interactions are neglected altogether. Non-covalent vdW interactions, however, are ubiquitous in nature and play a key role for the understanding and accurate description of the stability, dynamics, structure, and response properties in a plethora of systems. During the last decade, many promising methods have been developed for modeling vdW interactions in electronic-structure calculations. These methods include vdW-inclusive Density Functional Theory and correlated post-Hartree-Fock approaches. Here, we focus on the methods within the framework of Density Functional Theory, including non-local van der Waals density functionals, interatomic dispersion models within many-body and pairwise formulation, and random phase approximation-based approaches. This review aims to guide the reader through the theoretical foundations of these methods in a tutorial-style manner and, in particular, highlight practical aspects such as the applicability and the advantages and shortcomings of current vdW-inclusive approaches. In addition, we give an overview of complementary experimental approaches, and discuss tools for the qualitative understanding of non-covalent interactions as well as energy decomposition techniques. Besides representing a reference for the current state-of-the-art, this work is thus also designed as a concise and detailed introduction to vdW-inclusive electronic structure calculations for a general and broad audience.

Hapticity of asymmetric rhodium-allyl compounds in the light of real-space bonding indicators

Rhodium boryl complexes are valuable catalysts for hydro- or diboration reactions of alkenes, but can also react with ketones (R2C=O) and imines (R2C=NR′) giving rise to insertion products having formally Rh–R2C–O/NR′–B linkages. The resulting molecular structures, however, may show complex metal–ligand and ligand–ligand interaction patterns with often unclear metal–ligand connectivities (hapticities, ηn). In order to assign the correct hapticity in a set of asymmetric rhodium-allyl compounds with molecular structures indicating η1−5bonding, a comprehensive DFT study was conducted. The study comprises determination of a variety of real-space bonding indicators derived from computed electron and pair densities according to the AIM, ELI-D, NCI, and DORI topological and surface approaches, which uncover the metal–ligand connectivties and suggest an asymmetric ligand–metal donation/metal–ligand back-donation framework according to the Dewar–Chatt–Duncanson model.

Analysis of two [2]catenanes based on electron densities from invariom refinement and results from DFT calculations

Catenanes are of considerable interest as potential building blocks for molecular machines. The simplest [2]catenanes, Hopf links, consist of two macrocycles that are mechanically interlocked. This unusual architecture cannot be opened without breaking at least one covalent bond. Based on these structural characteristics, unusual properties on Hirshfeld or electrostatic potential surfaces could be expected. For a comparison of their structural and electronic properties, the electron densities (EDs) of two [2]catenanes, coded H22 and H4L7 in the original papers, were examined after application of the invariom formalism, relying on X-ray diffraction data collected earlier. The obtained electron density distributions were subjected to an analysis using the QTAIM formalism to yield bond and atomic properties. Moreover, molecular Hirshfeld surfaces and electrostatic potentials (ESP) were calculated. There are different types of intra- and intermolecular interactions in these two [2]catenanes. In addition to classical N–H···N and C–H···O hydrogen bonds, various types of π···π interactions in H22 and in H4L7 exist. Most of them are verified by local ED concentrations visible on the corresponding Hirshfeld surfaces, except for the parallel π···π interactions in H22, which are either too weak or too diffuse to generate an ED signal on the Hirshfeld surface between the contributing aromatic rings. The electrostatic potentials (ESPs) were calculated and displayed on molecular surfaces. The interaction in the cavity of one macrocycle with the penetrated fragment of the second one was examined and it was found that corresponding to the above-mentioned contacts attractive and repulsive interactions exist. Additionally the ED was examined using results of density functional calculations, including non-covalent interaction index (NCI) and electron localizability indicator (ELI-D) surface analysis, complementing experimental findings.

Analyzing Fluxional Molecules Using DORI

The Density Overlap Region Indicator (DORI) is a density-based scalar field that reveals covalent bonding patterns and noncovalent interactions in the same value range. This work goes beyond the traditional static quantum chemistry use of scalar fields and illustrates the suitability of DORI for analyzing geometrical and electronic signatures in highly fluxional molecular systems. Examples include a dithiocyclophane, which possesses multiple local minima with differing extents of π-stacking interactions and a temperature dependent rotation of a molecular rotor, where the descriptor is employed to capture fingerprints of CH-π and π-π interactions. Finally, DORI serves to examine the fluctuating π-conjugation pathway of a photochromic torsional switch (PTS). Attention is also placed on postprocessing the large amount of generated data and juxtaposing DORI with a data-driven low-dimensional representation of the structural landscape.