Boron-nitrogen analogues of cyclo[18]carbon

Investigating the potential of monocyclic B9N9 and C18 rings for the electrochemical sensing, and adsorption of carbazole-based anti-cancer drug derivatives: DFT-based first-principle study

CONTEXT

For the first time, the use of monocyclic rings C18 and B9N9 as sensors for the sensing of carbazole-based anti-cancer drugs, such as tetrahydrocarbazole (THC), mukonal (MKN), murrayanine (MRY), and ellipticine (EPT), is described using DFT simulations and computational characterization. The geometries, electronic properties, stability studies, sensitivity, and adsorption capabilities of C18 and B9N9 counterparts towards the selected compounds confirm that the analytes interact through active cavities of the C18 and B9N9 rings of the complexes.

METHODS

Based on the interaction energies, the sensitivity of surfaces towards EPT, MKN, MRY, and THC analytes is observed. The interaction energy of EPT@B9N9, MKN@B9N9, MRY@B9N9, and THC@B9N9 complexes are observed - 20.40, - 19.49, - 20.07, and - 18.27 kcal/mol respectively which is more exothermic than EPT@C18, MKN@C18, MRY@C18, and THC@C18 complexes are - 16.37, - 13.97, - 13.96, and - 11.39 kcal/mol respectively. According to findings from the quantum theory of atoms in molecules (QTAIM) and the reduced density gradient (RDG), dispersion forces play a significant role in maintaining the stability of these complexes. The electronic properties including FMOs, density of states (DOS), natural bond orbitals (NBO), charge transfer, and absorption studies are carried out. In comparison of B9N9 and C18, the analyte recovery time for C18 is much shorter (9.91 × 10-11 for THC@C18) than that for B9N9 shorter recovery time value of 3.75 × 10-9 for EPT@B9N9. These results suggest that our reported sensors B9N9 and C18 make it faster to detect adsorbed molecules at room temperature. The sensor response is more prominent in B9N9 due to its fine energy gap and high adsorption energy. Consequently, it is possible to think of these monocyclic systems as a potential material for sensor applications.

Genesis of Polynitrogen Compounds Employing Silicon Substituted cyclo[18]carbon: A DFT Investigation

Activation of molecular N2 and its catalytic ability to form NH3 using C17Si has been already reported. This current study reports the formation of exclusive polynitrogen clusters (N4 and N5) on the C17Si ring. The clusters are generated using N2 and N3 respectively. Physical and chemical property analyses of the clusters show that the N5 cluster exhibits greater stability than N4. The former is seen to experience reduced molecular strain compared to the latter owing to its co-planar geometry. The thermodynamic calculations of the systems further show that the formation of the N5 cluster is spontaneous compared to N4 on the C17Si ring.

Mechanistic Inquisition on the Reduction of C17Si(NH2)2 to NH3: A DFT Study

Activation of molecular nitrogen by silicon-substituted cyclo[18]carbon and its ability to produce the C17Si-(NH2)2 derivative, as the precursor of NH3, has been recently reported. This specific acquisition has piqued an interest to investigate the possibility of NH3 formation with further addition of H2 molecules in the gaseous reaction media. The current investigations reported in this article show that two moles of molecular H2 generate two molecules of NH3 and a C17Si-H2 byproduct from its precursor. The catalyst gets restored by an in situ reaction between some unreacted C17Si-N2 and the byproduct in the media. This reaction also produces the next C17Si-(NH)2 adduct, which restarts the catalytic cycle for NH3 production again.

Exploring the Aromaticity Differences of Isoelectronic Species of Cyclo[18]carbon (C18), B6C6N6, and B9N9: The Role of Carbon Atoms as Connecting Bridges

The cyclo[18]carbon (C18) has piqued widespread interest in recent years for its geometrical aesthetic and unique electronic structure. Inspired by it, theoretical investigations of its isoelectronic B9N9 have been published occasionally; however, few studies considered their other companion B6C6N6. In this work, we study the geometric structure, charge distribution, bonding characteristic, aromaticity, and electron delocalization of B6C6N6 and B9N9 for the first time and compare the relevant results with those of C18. Based on the comprehensive analysis of aromaticity indicators such as AV1245, nucleus-independent chemical shifts, anisotropy of the induced current density, magnetically induced current density, iso-chemical shielding surface, and induced magnetic field (Bind), we found that B6C6N6 has definitely a double aromatic character similar to C18 and the aromaticities of the two are very close, while B9N9 is a nonaromatic species. In response to this novel finding, we delved into its nature from an electron delocalization perspective through a localized orbital locator, electron localization function, Fermi hole, and atomic remote delocalization index analyses. The C atom between B and N as an interconnecting bridge strengthens the electron delocalization of the conjugate path, which is the essence of the significant enhancement of the molecular aromaticity from B9N9 to B6C6N6. This work elucidates that within the framework of the isoelectronicity of C18, different methods of atomic doping can achieve molecules with completely different properties.

Cyclo[n]carbons and catenanes from different perspectives: disentangling the molecular thread

All-carbon atomic rings, cyclo[n]carbons, have recently attracted vivid attention of experimentalists and theoreticians. Among them, cyclo[18]carbon is the most studied system. In this paper, we summarize and review various properties of cyclo[n]carbons, emphasising the aspects of their aromaticity/antiaromaticity. In the first part, the trends in bonding patterns and selected aromaticity indices with the increasing size of the rings are discussed. In the second part we explore the properties of catenane models based on interlocked cyclo[18]carbon rings from different perspectives and investigate their behaviour under the action of external force using computational experiments.

Activation and Conversion of Molecular Nitrogen to the Precursor of Ammonia on Silicon Substituted Cyclo[18]Carbon: a DFT Design

Recent synthesis of sp-hybridized cyclo[18]carbon allotrope has attracted immense curiosity. Since then, a generous amount of theoretical studies concerning aromaticity, adsorption, and spectra of the molecule have been performed. However, very few stuides have been carried out concerning its reactivities and catalytic behaviour. In this article, a DFT-based inquisition has been reported regarding the reactivity of Si substituted cyclo[18]carbon molecule towards molecular N₂ . Results show that the Si substituted derivative is effective in producing adducts with molecular nitrogen. Charge calculations and IRC trapping methods indicate that only the Si center of C₁₇ Si and its (HOMO-1) level participate in N₂ addition. The N-adduct so formed, is then found to spontaneously react with molecular H₂ . The addition of two H₂ molecules to the activated nitrogen molecule to give respective amine derivatives have also been studied. The successful generation of the precursor of NH₃ by C₁₇ Si lays a clear emphasis on its potentiality.

Theory of Borazine-Derived Nanothreads: Enumeration, Reaction Pathways, and Piezoelectricity

Nanothreads are one-dimensional macromolecules formed by pressure-induced polymerization along stacks of multiply unsaturated (or highly strained) molecules such as benzene (or cubane). Borazine is isoelectronic to benzene yet with substantial bond polarity, thus motivating a theoretical examination of borazine-derived nanothreads with degrees of saturation of 2, 4, and 6 (defined as the number of four-coordinated boron and nitrogen atoms per borazine formula unit). The energy increases upon going from molecular borazine to degree-2 borazine-derived threads and then decreases for degree-4 and degree-6 nanothreads as more σ bonds are formed. With the constraint of no more than two borazine formula units within the repeat unit of the framework's bonding topology, there are only 13 fully saturated (i.e., degree-6) borazine-derived nanothreads that avoid energetically costly homopolar bonds (as compared to more than 50 such candidates for benzene-derived threads). Only two of these are more stable than borazine. Hypothetical pathways from molecular borazine to these two degree-6 borazine-derived nanothreads are discussed. This relative paucity of outcomes may assist in kinetic control of reaction products. Beyond the high mechanical strength also predicted for carbon-based threads, properties such as piezoelectricity and flexoelectricity may be accessible to the polar lattice of borazine-derived nanothreads, with intriguing prospects for expression in these extremely thin yet rigid objects.

Intermolecular interactions between cyclo[18]carbon and XCN (X = H, F, Cl, Br, I): a theoretical study

In this article, the intermolecular interactions of cyclo[18]carbon with XCN (X = H, F, Cl, Br, I) were investigated in detail by quantum chemistry calculations and wavefunction analyses. The electrostatic potential and van der Waals potential of cyclo[18]carbon were examined, then the structures of the complexes, the interaction energies of the intermolecular interactions were studied. Quantum theory of atoms in molecules analysis was performed to help understand the specific interactions. The XCN molecules can insert into the cyclo[18]carbon ring, and ClCN, BrCN, and ICN could also bind with cyclo[18]carbon from outside. Charge transfer in the inner complex is more prominent than that of the outer complex. Plots of electron density difference revealed that electron density shift was significantly different when the X atom changed. The main driving force for molecular binding is dispersion attraction, which is disclosed by interaction region indicator analysis and energy decomposition calculations.

Cyclo[18]carbon including zero-point motion: ground state, first singlet and triplet excitations, and hole transfer

Recent synthesis of cyclo[18]carbon has spurred increasing interest in carbon rings. We focus on a comparative inspection of ground and excited states, as well as of hole transfer properties of cumulenic and polyynic cyclo[18]carbon via Density Functional Theory (DFT), time-dependent DFT (TD-DFT) and real-time time-dependent DFT (RT-TDDFT). Zero-point vibrations are also accounted for, using a Monte Carlo sampling technique and a less exact, yet mode-resolved, quadratic approximation. The inclusion of zero-point vibrations leads to a red-shift on the HOMO-LUMO gap and the first singlet and triplet excitation energies of both conformations, correcting the values of the 'static' configurations by 9% to 24%. Next, we oxidize the molecule, creating a hole at one carbon atom. Hole transfer along polyynic cyclo[18]carbon is decreased in magnitude compared to its cumulenic counterpart and lacks the symmetric features the latter displays. Contributions by each mode to energy changes and hole transfer between diametrically opposed atoms vary, with specific bond-stretching modes being dominant.

Model of B9N9 Response under External Electric Field: Geometry, Electronic Properties, Reaction Activity

In this paper, we performed the ωB97XD/def2-TZVP method with a density functional theory study on the boron–nitrogen (BN) analogues of cyclo[18]carbon. The geometric structure, polarization properties, and excitation effect were calculated in the presence of an external electric field (EEF). Furthermore, the dual descriptor and Fukui function matrices were employed to predict the tendency towards the electrophilic or nucleophilic reactions of B₉N₉ under varying EEF strengths. The results show that the application of an EEF will cause the cyclic structure of B₉N₉ to be considerably distorted towards an elliptical geometry, the polarization to increase, and the reactivity of B₉N₉ to enhance with the increase in the EEF strength. This is of great significance for further experimental exploration into the catalytic properties of BN fullerenes.

Bonding Character, Electron Delocalization, and Aromaticity of Cyclo[18]Carbon (C18 ) Precursors, C18 -(CO)n (n=6, 4, and 2): Focusing on the Effect of Carbonyl (-CO) Groups

The bonding character, electron delocalization, and aromaticity of the cyclo[18]carbon (C₁₈ ) precursors, C₁₈ -(CO)_n (n=6, 4, and 2), have been studied by combining quantum chemical calculations and various electronic wavefunction analyses with different physical bases. It was found that C₁₈ -(CO)_n (n=6, 4, and 2) molecules exhibit alternating long and short C-C bonds, and have out-of-plane and in-plane dual π systems (π^out and πⁱⁿ ) perpendicular to each other, which are consistent with the relevant characteristics of C₁₈ . However, the presence of carbonyl (-CO) groups significantly reduced the global electron conjugation of C₁₈ -(CO)_n (n=6, 4, and 2) compared to C₁₈ . Specifically, the -CO group largely breaks the extensive delocalization of πⁱⁿ system, and the π^out system is also affected by it but to a much lesser extent; as a consequence, C₁₈ -(CO)_n (n=6, 4, and 2) with larger n shows weaker overall aromaticity. Mostly because of the decreased but still apparent π^out electron delocalization in the C₁₈ -(CO)_n (n=6, 4, and 2), a notable diatropic induced ring current under the action of external magnetic field is observed, demonstrating the clear aromatic characteristic in the molecules. The correlation between C₁₈ -(CO)_n (n=6, 4, and 2) and C₁₈ in terms of the gradual elimination of -CO from the precursors showed that the direct elimination of two CO molecules in C₁₈ -(CO)_n (n=6, 4, and 2) has a synergistic mechanism, but it is kinetically infeasible under normal conditions due to the high energy barrier.

Remarkable Size Effect on Photophysical and Nonlinear Optical Properties of All-Carboatomic Rings, Cyclo[18]carbon and Its Analogues

Inspired by recent experimental observation of molecular morphology and theoretical predictions of multiple properties of cyclo[18]carbon, we systematically studied the photophysical and nonlinear optical properties of cyclo[2N]carbons (N=3-15) allotropes through density functional theory. This work unveils the unusual optical properties of the sp-hybridized carbon rings with different sizes. The remarkable size dependence of the optical properties of these systems and their underlying nature are profoundly explored, and the relevance between aromaticity and optical properties are highlighted. The extrapolation curves fitted for energy level of frontier molecular orbitals, maximum absorption wavelength, and (hyper)polarizability of considered carbon rings are presented, which can be used to reliably predict corresponding properties for arbitrarily large carbon rings. The findings in this study will facilitate the exploration of potential application of cyclocarbons in the field of optical materials.

Cyclo[n]carbons Form Strong N → C Dative/Covalent Bonds with Piperidine

The newly synthesized C₁₈ ring is demonstrated as the smallest all-carbon acceptor that exhibits strong electron acceptance. This study provides a quantum-chemical investigation of the electron-acceptance behavior of monocyclic carbon rings with a particular emphasis on C₁₈ through the formation of a dative bond with piperidine. The results show that C_n rings form strong dative bonds with piperidine, whereas the respective van der Waals (vdW) complexes are higher in energy. The main driving force is the release of angle strain of cyclo[n]carbons caused by the change in hybridization from sp to sp² associated with the formation of the dative bond. On the contrary, other sp allotropes, diynes, favorably form vdW complexes. Molecular dynamics (MD) simulations support the stability of the dative bond throughout a simulation of 20 ps. This opens up the possibility of stabilizing highly reactive C₁₈ through dative/covalent functionalization.

A density functional theory study on the electronic and adsorption characteristics of cyclo M9N9 (M = B and Al)

On the basis of experimental and theoretical calculations conducted for cyclo C₁₈, we predicted two novel inorganic cyclo M₉N₉ (M = B and Al) molecules. Because of the significant difference in electronegativity between M and N atoms, M-N bonds were ionic. Furthermore, the interaction of cyclo M₉N₉ with cyclopropylpiperazine (CPPP) was investigated. In cyclo M₉N₉, each M atom could adsorb one CPPP molecule. The CPPP molecules exhibited a preference to remain outside cyclo M₉N₉ molecules. Depending on the structural characteristics of CPPP molecules, the exciting part is that up to four CPPP molecules could be adsorbed on the exterior surface of cyclo M₉N₉. We calculated adsorption energies and analyzed the main structural parameters in the process. The research results indicated that adsorption on cyclo Al₉N₉ was energetically more favorable than that on cyclo B₉N₉. The cyclo M₉N₉ have considerable potential in the future. Graphical abstract.

Vibrational spectra and chemical imaging of cyclo[18]carbon by tip enhanced Raman spectroscopy

Vibrational modes and tip enhanced Raman spectroscopy (TERS) of a new carbon allotrope, cyclo[18]carbon (C18), were studied by density functional theory. A silver cluster tip was used to probe the interaction with C18, which is dependent on the distance and the atomically resolved positions. The TERS images show the position of the C[triple bond, length as m-dash]C bonds, as observed in a recent experimental report.

Non-equilibrium steady state conductivity in cyclo[18]carbon and its boron nitride analogue

A ring-shaped carbon allotrope was recently synthesized for the first time, reinvigorating theoretical interest in this class of molecules.

Induced magnetic field in sp-hybridized carbon rings: analysis of double aromaticity and antiaromaticity in cyclo[2N]carbon allotropes

The induced magnetic field of C2N (N = 3-14) carbon rings was dissected to contributions from out-of-plane and in-plane π orbitals revealing two concurrent long range shielding or deshielding cones as a manifestation of the dual aromatic and antiaromatic character of C4n+2 and of C4n rings respectively. Aromaticity based on the magnetic criterion was evaluated with regard to the bonding pattern and geometrical characteristics that elucidate the influence of bond length and bond angle alteration on out-of-plane and in-plane magnetic responses. Ground state polyynic geometries of C4n+2 rings exhibit comparable shielding cones to annulenes, decreasing the magnetic response with regard to the ring size and similar πout and πin diatropicity. Transition state cumulenic rings display increased aromaticity expressed by a very strong constant magnetic response and augmented πout diatropicity with regard to πin. The variations of the induced magnetic field are explained on the basis of frontier orbital interactions through rotational excitations, which enable further rationalization of the aromatic/antiaromatic behavior.