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Rageh AH, Abdel-Aal FAM, Farrag SA, Ali AMBH. A surfactant-based quasi-hydrophobic deep eutectic solvent for dispersive liquid-liquid microextraction of gliflozins from environmental water samples using UHPLC/fluorescence detection. Talanta 2024; 266:124950. [PMID: 37524041 DOI: 10.1016/j.talanta.2023.124950] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 07/11/2023] [Accepted: 07/14/2023] [Indexed: 08/02/2023]
Abstract
Despite the anticipated exceptional properties of deep eutectic solvents (DES) in microextraction techniques, their self-aggregation behaviour has only been sporadically studied in the previous literature. In the presented study, a novel surfactant-based quasi-hydrophobic deep eutectic solvent (DES) is synthesized and utilized in dispersive liquid-liquid microextraction (DLLME) of three gliflozins in environmental water samples as a proof-of-concept examples. The synthesized DES is composed of benzalkonium chloride (BZKCl) as a hydrogen bond acceptor and octanol (Oct) as a hydrogen bond donor. A full optimization of the extraction conditions was carried out including molar ratio and composition of DES, volume of DES, volume of water samples, extraction time and type of diluting solvent. Moreover, the extraction mechanism was thoroughly investigated, and it was established that the extraction of the target analytes is attributed to the analytes' incorporation into the micelles' cores that facilitates mass transfer from the aqueous layer into DES layer. Furthermore, micelles formed by surfactant-based DES will provide adequate dispersion of extractant phase within water samples, which consequently improves the extraction efficiency. Micelles formation was confirmed by transmission electron microscopy (TEM). Furthermore, 1H NMR spectra verifies that the synthesized DES keeps its integrity even after extraction, which excludes any decomposition of DES after DLLME procedure. The extraction recovery is in an excellent agreement with the hydrophobicity of the investigated drugs, being the highest for the most hydrophobic one. The extracted analytes were separated by UHPLC coupled with fluorescence detection. Under the optimized experimental conditions, the method exhibits excellent linearity and a high detection sensitivity with a limit of detection of 0.5, 2.0 and 0.1 ng mL-1 for EMP (empagliflozin), DAP (dapagliflozin) and CAN (canagliflozin), respectively. The greenness of the developed microextraction approach was assessed by different greenness metrics such as Complex GAPI and AGREE tools. The developed method shows excellent greenness of synthetic procedure for preparation of DES, the environmentally benign nature of DLLME procedure as well as the greenness of the developed UHPLC approach.
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Affiliation(s)
- Azza H Rageh
- Department of Pharmaceutical Analytical Chemistry, Faculty of Pharmacy, Assiut University, Assiut, 71526, Egypt.
| | - Fatma A M Abdel-Aal
- Department of Pharmaceutical Analytical Chemistry, Faculty of Pharmacy, Assiut University, Assiut, 71526, Egypt
| | - Sherien A Farrag
- Institute for Drug Development and Innovation Research (IDDIR), Assiut University, Assiut, Egypt
| | - Al-Montaser Bellah H Ali
- Department of Pharmaceutical Analytical Chemistry, Faculty of Pharmacy, Assiut University, Assiut, 71526, Egypt
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2
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Ren J, Guo X. The germicidal effect, biosafety and mechanical properties of antibacterial resin composite in cavity filling. Heliyon 2023; 9:e19078. [PMID: 37662807 PMCID: PMC10474440 DOI: 10.1016/j.heliyon.2023.e19078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 07/22/2023] [Accepted: 08/10/2023] [Indexed: 09/05/2023] Open
Abstract
In recent years, dental resin materials have become increasingly popular for cavity filling. However, these materials can shrink during polymerization, leading to microleakages that enable bacteria to erode tooth tissue and cause secondary caries. As a result, there is great clinical demand for the development of antibacterial resins. The principle of antibacterial resin includes contact killing and filler-release killing of bacteria. For contact killing, quaternary ammonium salts (QACs) and antibacterial peptides (AMPs) can be added. For filler-release killing, chlorhexidine (CHX) and nanoparticles are used. These antibacterial agents are effective against gram-positive bacteria, gram-negative bacteria, fungi, and more. Among them, QACs has a lasting antibacterial effect, and silver nanoparticles even have a certain ability to kill viruses. Biocompatibility-wise, QACs, AMPs, and CHX have low cytotoxicity to cells when added into the resin. However, nanoparticles with smaller particle sizes have higher cytotoxicity. In terms of mechanical properties, QACs, AMPs, and CHX do not negatively affect the resin. However, the addition of magnesium oxide can have a negative impact. This paper reviews the types and antibacterial principles of commonly used antibacterial resins in recent years, evaluates their antibacterial effect, biological safety, and mechanical properties, and provides references for selecting clinical filling materials.
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Affiliation(s)
- Jiamu Ren
- Yanbian University, Jilin, 133002, China
| | - Xinwei Guo
- Peking University, Haidian District, Beijing, 100871, China
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3
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Abdelquader MM, Li S, Andrews GP, Jones DS. Therapeutic Deep Eutectic Solvents: A Comprehensive Review of Their Thermodynamics, Microstructure and Drug Delivery Applications. Eur J Pharm Biopharm 2023; 186:85-104. [PMID: 36907368 DOI: 10.1016/j.ejpb.2023.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 02/13/2023] [Accepted: 03/07/2023] [Indexed: 03/12/2023]
Abstract
Deep eutectic solvents (DES) are multicomponent liquids that are usually formed by coupling a hydrogen bond donor and acceptor leading to strong non-covalent (NC) intermolecular networking and profound depression in the melting point of the system. Pharmaceutically, this phenomenon has been exploited to improve drugs' physicochemical properties, with an established DES therapeutic subcategory, therapeutic deep eutectic solvents (THEDES). THEDES preparation is usually via straightforward synthetic processes with little involvement of sophisticated techniques, which, in addition to its thermodynamic stability, make these multi-component molecular adducts a very attractive alternative for drug enabling purposes. Other NC bonded binary systems (e.g., co-crystals and ionic liquids) are utilized in the pharmaceutical field for enhancing drug's behaviours. However, a clear distinction between these systems and THEDES is scarcely discussed in the current literature. Accordingly, this review provides a structure-based categorization for DES formers, a discussion of its thermodynamic properties and phase behaviour, and it clarifies the physicochemical and microstructure boundaries between DES and other NC systems. Additionally, a summary of its preparation techniques and their experimental conditions preparation is supplied. Instrumental analysis techniques can be used to characterize and differentiate DES from other NC mixtures, hence this review draws a road map to for this purpose. Since this work mainly focuses on pharmaceutical applications of DES, all types of THEDES including the highly discussed types (conventional, drugs dissolved in DES and polymer based) in addition to the less discussed categories are covered. Finally, the regulatory status of THEDES was investigated despite the current unclear situation.
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Affiliation(s)
- Magdy M Abdelquader
- Pharmaceutical Engineering Group, School of Pharmacy, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7BL, UK; Pharmaceutical Technology Department, Faculty of Pharmacy, Tanta University, Tanat, Egypt.
| | - Shu Li
- Pharmaceutical Engineering Group, School of Pharmacy, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7BL, UK.
| | - Gavin P Andrews
- Pharmaceutical Engineering Group, School of Pharmacy, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7BL, UK.
| | - David S Jones
- Pharmaceutical Engineering Group, School of Pharmacy, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7BL, UK.
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4
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Fu W, Liu Q, Wang L, Huang X, Su Z, Huang Z, He J. Synthesis of polymerizable quaternary thiazole salts and their application as antibacterial agents for dental resin. J Mech Behav Biomed Mater 2022; 130:105183. [DOI: 10.1016/j.jmbbm.2022.105183] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 03/11/2022] [Accepted: 03/13/2022] [Indexed: 12/24/2022]
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5
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Oliveira JMDS, Cavalcanti TFS, Leite IF, Dos Santos DMRC, Porto ICCDM, de Aquino FLT, Sonsin AF, Lins RML, Vitti RP, de Freitas JD, Barreto EDO, de Souza ST, Kamiya RU, do Nascimento TG, Tonholo J. Propolis in Oral Healthcare: Antibacterial Activity of a Composite Resin Enriched With Brazilian Red Propolis. Front Pharmacol 2021; 12:787633. [PMID: 34912230 PMCID: PMC8667603 DOI: 10.3389/fphar.2021.787633] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 11/03/2021] [Indexed: 11/20/2022] Open
Abstract
The aim of this study was to obtain a Brazilian red propolis (BRP) enriched composite resin and to perform the characterization of its antibacterial activity, mechanical, and physical-chemical properties. Brazilian red propolis ethyl acetate extract (EABRP) was characterized by LC-ESI-Orbitrap-FTMS, UPLC-DAD, antibacterial activity, total flavonoids content, and radical scavenging capacity. BRP was incorporated to a commercial composite resin (RC) to obtain BRP enriched composite at 0.1, 0.15 and 0.25% (RP10, RP15 and RP25, respectively). The antibacterial activity RPs was evaluated against Streptococcus mutans by contact direct test and expressed by antibacterial ratio. The RPs were characterized as its cytotoxicity against 3T3 fibroblasts, flexural strength (FS), Knoop microhardness (KHN), post-cure depth (CD), degree of conversion (DC%), water sorption (Wsp), water solubility (Wsl), average roughness (Ra), and thermal analysis. Were identified 50 chemical compounds from BRP extract by LC-ESI-Orbitrap-FTMS. EABRP was bacteriostatic and bactericide at 125 and 500 μg/ml, respectively. The RP25 exhibited antibacterial ratio of 90.76% after 1 h of direct contact with S. mutans (p < 0.0001) while RC no showed significative antibacterial activity (p = 0.1865), both compared with cell control group. RPs and RC no showed cytotoxicity. RPs exhibited CD from 2.74 to 4.48 mm, DC% from 80.70 to 83.96%, Wsp from 17.15 to 21.67 μg/mm3, Wsl from 3.66 to 4.20 μg/mm3, Ra from 14.48 to 20.76 nm. RPs showed thermal resistance between 448–455°C. The results support that propolis can be used on development of modified composite resins that show antibacterial activity and that have compatible mechanical and physical-chemical properties to the indicate for composite resins.
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Affiliation(s)
- José Marcos Dos Santos Oliveira
- Postgraduate Program of Chemistry and Biotechnology, Institute of Chemistry and Biotechnology, Federal University of Alagoas, Maceió, Brazil.,Postgraduate Program in Health Research, Cesmac University Center, Maceió, Brazil
| | - Théo Fortes Silveira Cavalcanti
- Postgraduate Program in Materials, Center of Technology, Federal University of Alagoas, Maceió, Brazil.,Faculty of Dentistry, Federal University of Alagoas, Maceió, Brazil
| | | | | | - Isabel Cristina Celerino de Moraes Porto
- Faculty of Dentistry, Federal University of Alagoas, Maceió, Brazil.,Postgraduate Program in Pharmaceutical Sciences, Institute of Pharmaceutical Sciences, Federal University of Alagoas, Maceió, Brazil
| | - Fernanda Lima Torres de Aquino
- Postgraduate Program in Health Sciences, Institute of Biological and Health Sciences, Federal University of Alagoas, Maceió, Brazil
| | - Artur Falqueto Sonsin
- Postgraduate Program in Physics, Institute of Physics, Federal University of Alagoas, Maceió, Brazil
| | | | | | | | - Emiliano de Oliveira Barreto
- Postgraduate Program in Health Sciences, Institute of Biological and Health Sciences, Federal University of Alagoas, Maceió, Brazil
| | - Samuel Teixeira de Souza
- Postgraduate Program in Physics, Institute of Physics, Federal University of Alagoas, Maceió, Brazil
| | - Regianne Umeko Kamiya
- Postgraduate Program in Health Sciences, Institute of Biological and Health Sciences, Federal University of Alagoas, Maceió, Brazil
| | - Ticiano Gomes do Nascimento
- Postgraduate Program in Pharmaceutical Sciences, Institute of Pharmaceutical Sciences, Federal University of Alagoas, Maceió, Brazil
| | - Josealdo Tonholo
- Postgraduate Program of Chemistry and Biotechnology, Institute of Chemistry and Biotechnology, Federal University of Alagoas, Maceió, Brazil
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6
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Calvo‐Flores FG, Mingorance‐Sánchez C. Deep Eutectic Solvents and Multicomponent Reactions: Two Convergent Items to Green Chemistry Strategies. ChemistryOpen 2021; 10:815-829. [PMID: 34402596 PMCID: PMC8369850 DOI: 10.1002/open.202100137] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 06/30/2021] [Indexed: 12/20/2022] Open
Abstract
One of the highlights of green chemistry is the development of techniques and procedures with low environmental impact. In the last years, deep eutectic solvents (DES) have become an important alternative to conventional organic solvents. For a period ionic liquids have provoked remarkable interest, but they have been displaced by DES because they show easier preparation methods, lower prices, many of them are biodegradable and compatible with biological systems. In addition, they show adjustable physicochemical properties, high thermal stability, low volatility and are compatible with water. In this paper is reviewed the state of the art of the use of DES paying special attention to the role of reaction media in organic synthesis.
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Affiliation(s)
- Francisco G. Calvo‐Flores
- Grupo de Modelización MolecularDpto. de Química OrgánicaFacultad de CienciasUniversidad de Granada18071GranadaSpain
| | - Cristina Mingorance‐Sánchez
- Grupo de Modelización MolecularDpto. de Química OrgánicaFacultad de CienciasUniversidad de Granada18071GranadaSpain
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7
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Hansen BB, Spittle S, Chen B, Poe D, Zhang Y, Klein JM, Horton A, Adhikari L, Zelovich T, Doherty BW, Gurkan B, Maginn EJ, Ragauskas A, Dadmun M, Zawodzinski TA, Baker GA, Tuckerman ME, Savinell RF, Sangoro JR. Deep Eutectic Solvents: A Review of Fundamentals and Applications. Chem Rev 2020; 121:1232-1285. [PMID: 33315380 DOI: 10.1021/acs.chemrev.0c00385] [Citation(s) in RCA: 760] [Impact Index Per Article: 190.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Deep eutectic solvents (DESs) are an emerging class of mixtures characterized by significant depressions in melting points compared to those of the neat constituent components. These materials are promising for applications as inexpensive "designer" solvents exhibiting a host of tunable physicochemical properties. A detailed review of the current literature reveals the lack of predictive understanding of the microscopic mechanisms that govern the structure-property relationships in this class of solvents. Complex hydrogen bonding is postulated as the root cause of their melting point depressions and physicochemical properties; to understand these hydrogen bonded networks, it is imperative to study these systems as dynamic entities using both simulations and experiments. This review emphasizes recent research efforts in order to elucidate the next steps needed to develop a fundamental framework needed for a deeper understanding of DESs. It covers recent developments in DES research, frames outstanding scientific questions, and identifies promising research thrusts aligned with the advancement of the field toward predictive models and fundamental understanding of these solvents.
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Affiliation(s)
- Benworth B Hansen
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, Tennessee37996-2200, United States
| | - Stephanie Spittle
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, Tennessee37996-2200, United States
| | - Brian Chen
- Department of Chemical and Biomolecular Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Derrick Poe
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Yong Zhang
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Jeffrey M Klein
- Department of Chemical and Biomolecular Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Alexandre Horton
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, Tennessee37996-2200, United States
| | - Laxmi Adhikari
- Department of Chemistry, University of Missouri-Columbia, Columbia, Missouri 65211, United States
| | - Tamar Zelovich
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Brian W Doherty
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Burcu Gurkan
- Department of Chemical and Biomolecular Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Edward J Maginn
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Arthur Ragauskas
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, Tennessee37996-2200, United States
| | - Mark Dadmun
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37916, United States
| | - Thomas A Zawodzinski
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, Tennessee37996-2200, United States
| | - Gary A Baker
- Department of Chemistry, University of Missouri-Columbia, Columbia, Missouri 65211, United States
| | - Mark E Tuckerman
- Department of Chemistry, New York University, New York, New York 10003, United States
| | - Robert F Savinell
- Department of Chemical and Biomolecular Engineering, Case Western Reserve University, Cleveland, Ohio 44106, United States
| | - Joshua R Sangoro
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, Tennessee37996-2200, United States
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8
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Application of Antimicrobial Polymers in the Development of Dental Resin Composite. Molecules 2020; 25:molecules25204738. [PMID: 33076515 PMCID: PMC7587579 DOI: 10.3390/molecules25204738] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 10/12/2020] [Accepted: 10/15/2020] [Indexed: 12/20/2022] Open
Abstract
Dental resin composites have been widely used in a variety of direct and indirect dental restorations due to their aesthetic properties compared to amalgams and similar metals. Despite the fact that dental resin composites can contribute similar mechanical properties, they are more likely to have microbial accumulations leading to secondary caries. Therefore, the effective and long-lasting antimicrobial properties of dental resin composites are of great significance to their clinical applications. The approaches of ascribing antimicrobial properties to the resin composites may be divided into two types: The filler-type and the resin-type. In this review, the resin-type approaches were highlighted. Focusing on the antimicrobial polymers used in dental resin composites, their chemical structures, mechanical properties, antimicrobial effectiveness, releasing profile, and biocompatibility were included, and challenges, as well as future perspectives, were also discussed.
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9
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Abstract
Deep eutectic solvents (DESs)—a promising class of alternatives to conventional ionic liquids (ILs) that have freezing points lower than the individual components—are typically formed from two or more components through hydrogen bond interactions. Due to the remarkable advantages of biocompatibility, economical feasibility and environmental hospitality, DESs show great potentials for green production and manufacturing. In terms of the processing of functional composite resins, DESs have been applied for property modifications, recyclability enhancement and functionality endowment. In this review, the applications of DESs in the processing of multiple functional composite resins such as epoxy, phenolic, acrylic, polyester and imprinted resins, are covered. Functional composite resins processed with DESs have attracted much attention of researchers in both academic and industrial communities. The tailored properties of DESs for the design of functional composite resins—as well as the effects of hydrogen bond on the current polymeric systems—are highlighted. In addition to the review of current works, the future perspectives of applying DESs in the processing of functional composite resins are also presented.
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10
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Wang J, Xue J, Dong X, Yu Q, Baker SN, Wang M, Huang H. Antimicrobial properties of benzalkonium chloride derived polymerizable deep eutectic solvent. Int J Pharm 2019; 575:119005. [PMID: 31899317 DOI: 10.1016/j.ijpharm.2019.119005] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Revised: 11/24/2019] [Accepted: 12/26/2019] [Indexed: 01/28/2023]
Abstract
Benzalkonium chloride (BC) is a quaternary ammonium antimicrobial agent used in a variety of applications. In this work, BC was prepared into deep eutectic solvent (DES) with acrylic acid (AA) or methacrylic acid (MA). Within the newly prepared DES, BC is responsible for antimicrobial properties, while AA and MA are responsible for polymerization. Three types of microorganisms, E. coli (gram-negative bacilli), S. aureus (gram-positive cocci) and C. albicans (fungi), were assessed for antimicrobial properties through agar diffusion test. DES viscosity measurements and polymerizations were also conducted to assist the antimicrobial performance analysis. From this study, stronger antimicrobial effectiveness of BC-AA DES towards S. aureus and C. albicans was observed, while smaller inhibition zone widths were obtained for BC-AA DES polymer compared to BC-AA DES monomer which may due to the limited active component transportation after polymerization. When changing AA to MA, increased structural complexity and decreased linearity may limit the molecule movement thus reduce the inhibition zone width, which could be proved by the calculated activation energy results. Accurately determined eutectic ratio of DES is recommended to get optimized drug release control. This work offers a new sight for preparation of antimicrobial materials with stronger effectiveness and limited release.
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Affiliation(s)
- Jing Wang
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo, Shandong, China; Department of Mechanical & Aerospace Engineering, University of Missouri, Columbia, MO, United States.
| | - Jing Xue
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo, Shandong, China.
| | - Xiaoqing Dong
- Department of Mechanical & Aerospace Engineering, University of Missouri, Columbia, MO, United States.
| | - Qingsong Yu
- Department of Mechanical & Aerospace Engineering, University of Missouri, Columbia, MO, United States.
| | - Sheila N Baker
- Department of Chemistry, University of Missouri, Columbia, MO, United States.
| | - Ming Wang
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo, Shandong, China.
| | - Haofei Huang
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo, Shandong, China.
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11
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Boone K, Camarda K, Spencer P, Tamerler C. Antimicrobial peptide similarity and classification through rough set theory using physicochemical boundaries. BMC Bioinformatics 2018; 19:469. [PMID: 30522443 PMCID: PMC6282327 DOI: 10.1186/s12859-018-2514-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Accepted: 11/20/2018] [Indexed: 01/09/2023] Open
Abstract
Background Antimicrobial peptides attract considerable interest as novel agents to combat infections. Their long-time potency across bacteria, viruses and fungi as part of diverse innate immune systems offers a solution to overcome the rising concerns from antibiotic resistance. With the rapid increase of antimicrobial peptides reported in the databases, peptide selection becomes a challenge. We propose similarity analyses to describe key properties that distinguish between active and non-active peptide sequences building upon the physicochemical properties of antimicrobial peptides. We used an iterative supervised machine learning approach to classify active peptides from inactive peptides with low false discovery rates in a relatively short computational search time. Results By generating explicit boundaries, our method defines new categories of active and inactive peptides based on their physicochemical properties. Consequently, it describes physicochemical characteristics of similarity among active peptides and the physicochemical boundaries between active and inactive peptides in a single process. To build the similarity boundaries, we used the rough set theory approach; to our knowledge, this is the first time that this approach has been used to classify peptides. The modified rough set theory method limits the number of values describing a boundary to a user-defined limit. Our method is optimized for specificity over selectivity. Noting that false positives increase activity assays while false negatives only increase computational search time, our method provided a low false discovery rate. Published datasets were used to compare our rough set theory method to other published classification methods and based on this comparison, we achieved high selectivity and comparable sensitivity to currently available methods. Conclusions We developed rule sets that define physicochemical boundaries which allow us to directly classify the active sequences from inactive peptides. Existing classification methods are either sequence-order insensitive or length-dependent, whereas our method generates the rule sets that combine order-sensitive descriptors with length-independent descriptors. The method provides comparable or improved performance to currently available methods. Discovering the boundaries of physicochemical properties may lead to a new understanding of peptide similarity. Electronic supplementary material The online version of this article (10.1186/s12859-018-2514-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Kyle Boone
- Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 5109, 1530 W 15th Street, Lawrence, KS, 66045, USA
| | - Kyle Camarda
- Chemical and Petroleum Engineering Department, University of Kansas, Learned Hall, Room 4154, 1530 West 15th Street, Lawrence, KS, 66045, USA
| | - Paulette Spencer
- Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3111, 1530 West 15th Street, Lawrence, KS, 66045, USA
| | - Candan Tamerler
- Mechanical Engineering Department, Bioengineering Program, Institute of Bioengineering Research, University of Kansas, Learned Hall, Room 3135A, 1530 W 15th St, Lawrence, KS, 66045, USA.
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12
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Burdușel AC, Gherasim O, Grumezescu AM, Mogoantă L, Ficai A, Andronescu E. Biomedical Applications of Silver Nanoparticles: An Up-to-Date Overview. NANOMATERIALS (BASEL, SWITZERLAND) 2018; 8:E681. [PMID: 30200373 PMCID: PMC6163202 DOI: 10.3390/nano8090681] [Citation(s) in RCA: 582] [Impact Index Per Article: 97.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Revised: 08/24/2018] [Accepted: 08/28/2018] [Indexed: 12/18/2022]
Abstract
During the past few years, silver nanoparticles (AgNPs) became one of the most investigated and explored nanotechnology-derived nanostructures, given the fact that nanosilver-based materials proved to have interesting, challenging, and promising characteristics suitable for various biomedical applications. Among modern biomedical potential of AgNPs, tremendous interest is oriented toward the therapeutically enhanced personalized healthcare practice. AgNPs proved to have genuine features and impressive potential for the development of novel antimicrobial agents, drug-delivery formulations, detection and diagnosis platforms, biomaterial and medical device coatings, tissue restoration and regeneration materials, complex healthcare condition strategies, and performance-enhanced therapeutic alternatives. Given the impressive biomedical-related potential applications of AgNPs, impressive efforts were undertaken on understanding the intricate mechanisms of their biological interactions and possible toxic effects. Within this review, we focused on the latest data regarding the biomedical use of AgNP-based nanostructures, including aspects related to their potential toxicity, unique physiochemical properties, and biofunctional behaviors, discussing herein the intrinsic anti-inflammatory, antibacterial, antiviral, and antifungal activities of silver-based nanostructures.
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Affiliation(s)
- Alexandra-Cristina Burdușel
- Faculty of Engineering in Foreign Languages, University Politehnica of Bucharest, 313 Splaiul Independenței, Bucharest 060042, Romania.
| | - Oana Gherasim
- Department of Science and Engineering of Oxide Materials and Nanomaterials, Faculty of Applied Chemistry and Materials Science, University Politehnica of Bucharest, 1-7 Gheorghe Polizu Street, Bucharest 011061, Romania.
- Lasers Department, National Institute for Lasers, Plasma and Radiation Physics, 409 Atomiștilor Street, Magurele 077125, Romania.
| | - Alexandru Mihai Grumezescu
- Department of Science and Engineering of Oxide Materials and Nanomaterials, Faculty of Applied Chemistry and Materials Science, University Politehnica of Bucharest, 1-7 Gheorghe Polizu Street, Bucharest 011061, Romania.
| | - Laurențiu Mogoantă
- Research Center for Microscopic Morphology and Immunology, University of Medicine and Pharmacy of Craiova, 2 Petru Rareș Street, Craiova 200349, Romania.
| | - Anton Ficai
- Department of Science and Engineering of Oxide Materials and Nanomaterials, Faculty of Applied Chemistry and Materials Science, University Politehnica of Bucharest, 1-7 Gheorghe Polizu Street, Bucharest 011061, Romania.
| | - Ecaterina Andronescu
- Department of Science and Engineering of Oxide Materials and Nanomaterials, Faculty of Applied Chemistry and Materials Science, University Politehnica of Bucharest, 1-7 Gheorghe Polizu Street, Bucharest 011061, Romania.
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13
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Stencel R, Kasperski J, Pakieła W, Mertas A, Bobela E, Barszczewska-Rybarek I, Chladek G. Properties of Experimental Dental Composites Containing Antibacterial Silver-Releasing Filler. MATERIALS (BASEL, SWITZERLAND) 2018; 11:E1031. [PMID: 29912158 PMCID: PMC6025467 DOI: 10.3390/ma11061031] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2018] [Revised: 06/11/2018] [Accepted: 06/11/2018] [Indexed: 12/19/2022]
Abstract
Secondary caries is one of the important issues related to using dental composite restorations. Effective prevention of cariogenic bacteria survival may reduce this problem. The aim of this study was to evaluate the antibacterial activity and physical properties of composite materials with silver sodium hydrogen zirconium phosphate (SSHZP). The antibacterial filler was introduced at concentrations of 1%, 4%, 7%, 10%, 13%, and 16% (w/w) into model composite material consisting of methacrylate monomers and silanized glass and silica fillers. The in vitro reduction in the number of viable cariogenic bacteria Streptococcus mutans ATCC 33535 colonies, Vickers microhardness, compressive strength, diametral tensile strength, flexural strength, flexural modulus, sorption, solubility, degree of conversion, and color stability were investigated. An increase in antimicrobial filler concentration resulted in a statistically significant reduction in bacteria. There were no statistically significant differences caused by the introduction of the filler in compressive strength, diametral tensile strength, flexural modulus, and solubility. Statistically significant changes in degree of conversion, flexural strength, hardness (decrease), solubility (increase), and in color were registered. A favorable combination of antibacterial properties and other properties was achieved at SSHZP concentrations from 4% to 13%. These composites exhibited properties similar to the control material and enhanced in vitro antimicrobial efficiency.
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Affiliation(s)
- Robert Stencel
- Private Practice, Center of Dentistry and Implantology, ul. Karpińskiego 3, 41-500 Chorzów, Poland.
| | - Jacek Kasperski
- Department of Prosthetic Dentistry, School of Medicine with the Division of Dentistry in Zabrze, Medical University of Silesia, pl. Akademicki 17, 41-902 Bytom, Poland.
| | - Wojciech Pakieła
- Faculty of Mechanical Engineering, Institute of Engineering Materials and Biomaterials, Silesian University of Technology, ul. Konarskiego 18a, 44-100 Gliwice, Poland.
| | - Anna Mertas
- Chair and Department of Microbiology and Immunology, School of Medicine with the Division of Dentistry in Zabrze, Medical University of Silesia in Katowice, ul. Jordana 19, 41-808 Zabrze, Poland.
| | - Elżbieta Bobela
- Chair and Department of Microbiology and Immunology, School of Medicine with the Division of Dentistry in Zabrze, Medical University of Silesia in Katowice, ul. Jordana 19, 41-808 Zabrze, Poland.
| | - Izabela Barszczewska-Rybarek
- Department of Physical Chemistry and Technology of Polymers, Silesian University of Technology, 44-100 Gliwice, Poland.
| | - Grzegorz Chladek
- Faculty of Mechanical Engineering, Institute of Engineering Materials and Biomaterials, Silesian University of Technology, ul. Konarskiego 18a, 44-100 Gliwice, Poland.
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