Effects of sewage sludge supplementation on heavy metal accumulation and the expression of ABC transporters in Sinapis alba L. during assisted phytoremediation of contaminated sites

Metabolic Responses to Manganese Toxicity in Soybean Roots and Leaves

Soybean is one of the most crucial beans in the world. Although Mn (manganese) is a kind of important nutritive element helpful to plant growth and health, excess Mn is harmful to crops. Nevertheless, the effect of Mn toxicity on soybean roots and leaves metabolism is still not clear. To explore this, water culture experiments were conducted on the development, activity of enzyme, and metabolic process of soybeans under varying levels of Mn treatment (5 and 100 μM). Compared with the control, the soybeans under Mn stress showed inhibited growth and development. Moreover, the activity of superoxide dismutase (SOD), catalase (CAT), peroxidase (POD), ascorbate peroxidase (APX), and the soluble protein content in leaves and roots of soybean were all increased. However, soluble sugar and proline contents in soybean roots and leaves showed the opposite trend. In addition, the Mg (magnesium) and Fe (iron) ion contents in soybean leaves significantly decreased, and the Mn ion content greatly increased. In roots, the Mn and Fe ion content increased, whereas the Mg ion content decreased. Furthermore, the metabolomic analysis based on nontargeted liquid chromatography-mass spectrometry identified 136 and 164 differential metabolites (DMs) that responded to Mn toxicity in roots and leaves of soybean, respectively. These DMs might participate in five different primary metabolic pathways in soybean leaves and roots, suggesting that soybean leaves and roots demonstrate different kinds of reactions in response to Mn toxicity. These findings indicate that Mn toxicity will result in enzymes activity being changed and the metabolic pathway being seriously affected, hence inhibiting the development of soybean.

Understanding the Effect of Different Glucose Concentrations in the Oligotrophic Bacterium Bacillus subtilis BS-G1 through Transcriptomics Analysis

Glucose is an important carbon source for microbial growth, and its content in infertile soils is essential for the growth of bacteria. Since the mechanism of oligotrophic bacterium adaptation in barren soils is unclear, this research employed RNA-seq technology to examine the impact of glucose concentration on the oligotrophic bacterium B. subtilis BS-G1 in soil affected by desertification. A global transcriptome analysis (RNA-Seq) revealed that the significantly differentially expressed genes (DEGs) histidine metabolism, glutamate synthesis, the HIF-1 signaling pathway, sporulation, and the TCA cycle pathway of B. subtilis BS-G1 were significantly enriched with a 0.015 g/L glucose concentration (L group), compared to a 10 g/L glucose concentration (H group). The DEGs amino acid system, two-component system, metal ion transport, and nitrogen metabolism system of B. subtilis BS-G1 were significantly enriched in the 5 g/L glucose concentration (M group), compared with the H group. In addition, the present study identified the regulation pattern and key genes under a low-glucose environment (7 mRNAs and 16 sRNAs). This study primarily investigates the variances in the regulatory pathways of the oligotrophic B. subtilis BS-G1, which holds substantial importance in comprehending the mechanism underlying the limited sugar tolerance of oligotrophic bacteria.

Characteristics of cadmium accumulation and tolerance in apple plants grown in different soils

Cadmium (Cd) is a nonessential element and highly toxic to apple tree. However, Cd accumulation, translocation and tolerance in apple trees planted in different soils remain unknown. To investigate soil Cd bioavailability, plant Cd accumulation, physiological changes as well as gene expression patterns in apple trees grown in five different soils, 'Hanfu' apple seedlings were planted in orchard soils collected from Maliangou village (ML), Desheng village (DS), Xishan village (XS), Kaoshantun village (KS) and Qianertaizi village (QT), and subjected to 500 μM CdCl₂ for 70 d. Results showed that soils of ML and XS had higher content of organic matter (OM), clay and silt, and cation exchange capacity (CEC) but lower sand content than the other soils, thereby reduced Cd bioavailability, which could be reflected by lower concentrations and proportions of acid-soluble Cd but higher concentrations and proportions of reducible and oxidizable Cd. The plants grown in soils of ML and XS had relatively lower Cd accumulation levels and bio-concentration factors than those grown in the other soils. Excess Cd reduced plant biomass, root architecture, and chlorophyll content in all plants but to relatively lesser degree in those grown in soils of ML and XS. The plants grown in soils of ML, XS and QT had comparatively lower reactive oxygen species (ROS) content, less membrane lipid peroxidation, and higher antioxidant content and enzyme activity than those grown in soils of DS and KS. Transcript levels of genes regulating Cd uptake, transport and detoxification such as HA11, VHA4, ZIP6, IRT1, NAS1, MT2, MHX, MTP1, ABCC1, HMA4 and PCR2 displayed significant differences in roots of plants grown in different soils. These results indicate that soil types affect Cd accumulation and tolerance in apple plants, and plants grown in soils with higher OM content, CEC, clay and silt content and lower sand content suffer less Cd toxicity.

Integrating physiological and transcriptome analyses clarified the molecular regulation mechanism of PyWRKY48 in poplar under cadmium stress

WRKY transcription factors (TFs) play an important role in regulating plant growth and responses to environmental stress. However, the molecular mechanism of WRKY to cadmium (Cd) stress is unclear, which prevents phytoremediation of Cd-contaminated soil from widely application. To determine the underlying mechanism, PyWRKY48-overexpressing poplars were obtained (OE-32 and OE-67) to study the Cd tolerance and accumulation in poplars. Results showed that the Cd content in the aboveground part of the two transgenic poplar lines were 1.57 and 1.99 times higher than that of wild type (WT), and lateral roots, GSH, PCs content and GST activity increased significantly. RNA-seq. data about transgenic and WT poplars revealed that 2074 differentially expressed genes (DEGs) in roots, 4325 in leaves, and 499 in both tissues. And these DEGs were mainly concentrated in ABC transport protein (PaABC), heavy-metal binding protein (PaHIPP), and transportation and loading of xylem (PaNPF, PaBSP) proteins, and they enhanced Cd accumulation. Meanwhile, PyWRKY48 increased the Cd tolerance of transgenic poplars by up-regulating the expression of PaGRP, PaPER and PaPHOS, which encode cell wall proteins, antioxidant enzyme, and heavy metal-associated proteins, respectively. In addition, overexpression PyWRKY48 promoted poplar growth by increasing the chlorophyll and carotenoid content. ENVIRONMENTAL IMPLICATION: This study generated PyWRKY48-overexpressing poplars and functionally verified them in Cd-contaminated soil, to analyze the effects of the gene on poplar growth, Cd tolerance and Cd accumulation. RNA seq. data revealed that several genes are involved in Cd exposure. This may provide a strong molecular basis and new ideas for improving the phytoremediation efficiency of Cd-contaminated soils. Importantly, the transgenic poplars grew better and accumulated more Cd than the wild-type. Therefore, PyWRKY48-overexpressing poplars could be considered useful for mitigating environmental pollution.

Heavy metals reshaping the structure and function of phylloplane bacterial community of native plant Tamarix ramosissima from Pb/Cd/Cu/Zn smelting regions

Heavy metal (HM) is noxious element that cannot be biodegraded, thus accumulating in the environment and posing a serious threat to the ecology. Plant phylloplane harbors diverse microbial communities that profoundly influence ecosystem functioning and host health. With more HM accumulating around smelters, native plants and microbes in various habitats tend to suffer from HM. However, the response of phylloplane bacteria of native plants to HM remains unclear. Thus, this study aimed to explain the response of Tamarix ramosissima, a phylloplane bacterial community to HM as well as the effect of the process on host growth in situ by investigating the potential source of HM and bacterial community shift. Results showed that, in most cases, the contaminated site with high HM level caused more accumulation of HM in phylloplane and leaves. Moreover, HM in the phylloplane was not from the internal transport of the plant but it could be due to the wind action or rains. Bacteria in phylloplane may have come from the soil due to their strong positive correlation with corresponding soil at the genus level. High HM level inhibited the relative abundance of dominant bacteria, increased the diversity and species richness of bacterial community in phylloplane, and induced more special bacteria to maintain higher productivity of the host plant, for which, Cu and Pb were the major contributors. Meanwhile, bacteria in phylloplane showed a universal positive correlation in the co-occurrence network, which showed less stability than that in corresponding soil in the smelting region, and it is helpful to regulate the growth of plants more rapidly. Nearly 25% of KEGG pathways were modulated by high HM level and bacterial function tended to stabilize HM to avoid the potential process of leaf absorption. The study illustrated that HM in phylloplane played an important role in shaping the bacterial community of phylloplane as compared to HM in leaves or phyllosphere, and the resulting increase of diversity and richness of bacterial community and special bacteria further maintained the growth of the host plant suffering from HM stress.

Cecum microbiome and metabolism characteristics of Silky Fowl and White Leghorn chicken in late laying stages

Cecal microflora plays a key role in the production performance and immune function of chickens. White Leghorn (WL) is a well-known commercial layer line chicken with high egg production rate. In contrast, Silky Fowl (SF), a Chinese native chicken variety, has a low egg production rate, but good immune performance. This study analyzed the composition of cecal microbiota, metabolism, and gene expression in intestinal tissue of these varieties and the correlations among them. Significant differences were observed in the cecal microbes: Bacteroides was significantly enriched in WL, whereas Veillonellaceae and Parabacteroides were significantly enriched in SF. Carbohydrate biosynthesis and metabolism pathways were significantly upregulated in WL cecum, which might provide more energy to the host, leading to persistently high levels of egg production. The higher Parabacteroides abundance in SF increased volicitin content, enhanced α-linolenic acid metabolism, and significantly negatively correlated with metabolites of propanoate metabolism and carbohydrate metabolism. Genes related to lipid metabolism, immunity, and melanogenesis were significantly upregulated in the SF cecum, regulating lipid metabolism, and participating in the immune response, while genes related to glucose metabolism and bile acid metabolism were expressed at higher levels in WL, benefiting energy support. This study provided a mechanism for intestinal microorganisms and metabolic pathways to regulate chicken egg-laying performance and immunity.

Transcriptome sequencing of Brassica napus highlights the complex issues with soil supplementation with sewage sludge

The soil supplementation with sewage sludge (SS) has become a widespread method to improve soil quality, but its long-term possible consequences are still relatively unknown. SS may contain several groups of contaminants to which the biological responses of the organisms are still poorly understood mainly due to the mixture toxicity. In this context, RNA-seq has been used to assess the impact of the exposure to sewage sludge supplemented soil at the whole-transcriptome level in the Brassica napus (B. napus). Although the municipal sewage sludge passed all safety regulations set by the EU commission (86/278/EEC), soil supplementation with SS caused a significant (p < 0.05) increase in the content of lead (by 68.8%, 71.4% in plant shoots and roots, respectively), zinc (by 22.4% and 31.2%), nickel (by 67.0% and 30.2%), and copper (by 33.1% and 39.2%). The de-novo assembled transcriptome of B. napus identified 555 differently expressed genes (DEGs) in a response to sewage sludge supplementation at the false detection rate below 0.001 (FDR <0.001). Among them, 313 genes were up-regulated and 242 genes were down-regulated. The gene ontology analysis (GO) had shown, that significantly enriched GO groups included genes involved in photosynthesis, carbohydrate metabolism and photosystems repair (41 genes), response to oxidative stress (50 genes), response to pathogens (36 genes), response to xenobiotics (15 genes), and heavy metals (41 genes), cell death (8 genes), cell wall structure (15 genes). These results suggest a significant impact of contaminants in sewage sludge on plants transcriptome. The transcriptomic approach facilitated a better understanding of the molecular level of the potential toxicity of sewage sludge in B. napus. RNA-seq allowed for the identification of potential novel early-warning molecular markers of environmental contamination. This work highlights the crucial necessity for rapid legislation change concerning the allowable levels of contaminants in sewage sludge applied on land, to mitigate the possible adverse outcomes in the ecosystem after its use as a fertilizer.

Metal resistant gut microbiota facilitates snails feeding on metal hyperaccumulator plant Sedum alfredii in the phytoremediation field

The interactions between hyperaccumulators and their associated herbivores have been mostly investigated in their natural habitats and largely ignored in the phytoremediation practice. Herein, we investigated the herbivory status of Zn/Cd-hyperaccumulating plant Sedum alfredii from both their natural habitats and their applied remediation field, and inspected the adaptive strategies of the herbivores from the perspective of their facilitative gut microbiota. Field investigations showed that snail species Bradybaena ravida was the dominant herbivore feeding on S. alfredii and they can be only found in sites with lower levels of heavy metals compared with the plant natural habitat. Gut microbial community was analyzed using two sequencing methods (16S rRNA and czcA-Zn/Cd resistant gene) to comparatively understand the effect of gut microbes in facilitating snail feeding on the hyperaccumulators. The results revealed significant differences in the diversity and richness between the gut microbiota of the two snail populations, which was more pronounced by the czcA sequencing method. Despite of the compositional differences, their functions seemed to converge into three categories as metal-tolerant and contaminant degraders, gut symbionts, and pathogens. Further function potentials predicted by Tax4Fun based on 16 S sequencing data were in accordance with this categorization as the most abundant metabolic pathways were two-component system and ABC transporter, which was closely related to metal stress adaptation. The prevalence of positive interactions (~80%) indicated by the co-occurrence network analysis based on czcA sequencing data in both groups of gut microbiota further suggested the facilitative effect of these metal-tolerant gut microbes in coping with the high metal diet, which ultimately assist the snails to successfully feed on S. alfredii plants and thrive. This work for the first time provides evidence that the herbivore adaptation to hyperaccumulators were also associated with their gut microbial adaptation to metals.

Effect of sewage sludge-based fertilizers on biomass growth and heavy metal accumulation in plants

This study was focused on an assessment of the agronomic efficiency of organo-mineral fertilizers based on sewage sludge and possible accumulation of heavy metals in plant biomass. Fertilizers optimized for industrial crops (rape, maize, sunflower) were used in the study. The impact of fertilizers based on sewage sludge on early stage plant growth was assessed using germination tests, and the impact on further growth and development was assessed using pot trials. The germination index of cress, sorghum and mustard was in the range of 50-92% depending on the type and dose of fertilizer and on the plant tested, which corresponded to moderate to zero toxicity. The results of pot trials showed a significant impact of fertilizers based on sewage sludge on the biomass growth of selected plants. The use of fertilizers caused an increase in fresh mass of 75-138% for rape, 96-138% for maize and 23-54% for sunflower with respect to the control sample. An increase in the dose of fertilizers for rape did not significantly affect the heavy metal content in plants, except for the content of Ni. In the case of fertilizers optimized for maize and sunflower, an increase in the dose caused an accumulation of Cd, Ni, Pb and Cr in the biomass of the tested plants. However, it should be noted that the pollution level of plant biomass for all treatments was zero to medium (1.00-1.66).

The Effects of Wastewater Treatment Plant Failure on the Gulf of Gdansk (Southern Baltic Sea)

In August 2019 and during August/September 2020, the main collection system of the Wastewater Treatment Plant (WWTP) in Warsaw, Poland, malfunctioned. During that system failure, over 4.8 million m³ of untreated wastewater was dropped directly into the Vistula River in just a few days. It is currently considered as one of the largest known failures of WWTP worldwide. In order to assess the environmental impact, water samples were collected from 2 spots at the Vistula river estuary (406 and 415 km from the discharge location, respectively), and 4 spots at the Gulf of Gdansk, situated on the southern shore of the Baltic Sea. The sampling was conducted before the wastewater wave reached the Vistula river’s mouth, followed by daily sampling during 21 days after the malfunction occurred. The study showed the decline in water quality at the Vistula river estuary and the Baltic shore waters as the wave of wastewater reached those points, despite being situated over 400 km downstream from the place of the accident. Those changes included the reduction in the dissolved oxygen content (by 0.69-fold at its peak), the increase in Total Organic Carbon (TOC) (by 1.28-fold at its peak), nitrate-nitrogen (N-NO₃) (by 1.68-fold at its peak), phosphorous (P) (by 2.41-fold at its peak), conductivity (by 16.8-fold at its peak), and Chemical Oxygen Demand (COD) (by 1.84-fold). In the samples from the Vistula river, the decline in water quality was seen as incidental and lasted 2–3 days. Subsequently, the levels of physical and chemical parameters returned to the levels from before the accident. However, the changes in the Gulf of Gdańsk lasted significantly longer, especially on the West side of the Vistula river, where, even after 21 days from the initial accident, some parameters remained altered.

Phytoremediation of heavy metals and total petroleum hydrocarbon and nutrients enhancement of Typha latifolia in petroleum secondary effluent for biomass growth

Phytoremediation is an innovative tool which can be used for the treatment of industrial and agricultural wastewater. Typha latifolia (T. latifolia) is an aquatic plant used for phytoremediation of heavy metals (HMs) like cadmium (Cd), cobalt (Co), manganese (Mn), and TPH (total petroleum hydrocarbon) for the treatment of petroleum secondary effluent (PSE). During this experiment, the growth of T. latifolia in biomass, nutrient concentrations, and heavy metals were studied. The results indicated that T. latifolia was more tolerant to Cd, Co, and Mn due to its transfer index (TI) which was found to be greater than 2.9. The enrichment coefficients of the metals, Cd and Co present in the root were found to be higher than 3.31 to 2.56 and 5.35 to 3.55, respectively unlike the stem of T. latifolia. But, the enrichment coefficient of Mn was found to be 1.98 which was expected to be 3.51 at 75%. Similarly, the enrichment coefficients of all the metals, except for Co, in roots of T. latifolia were higher than 5.36. (TI) for Co (2.95) and Mn (2.55) which is better as compared to the enrichment coefficients of Cd (2.35) and TPH (3.45) in PSE. Thus, there is a possibility that PSE could be a source of important nutrients.

Transfer of sulfidized silver from silver nanoparticles, in sewage sludge, to plants and primary consumers in agricultural soil environment

Consumer products containing silver nanoparticles (AgNPs) release silver (Ag) to the environment, particularly wastewater. Sewage sludge (SS), which contains numerous contaminants including Ag, is recycled by spreading on agricultural land. Although slight impacts and bioaccumulation of Ag sulfide (Ag₂S, the main species found in SS) in terrestrial organisms have been demonstrated, possible trophic transfer into plants and subsequently animal species has not been examined. Accordingly, the present study experimentally measured the transfer of Ag from AgNPs and sulfidized Ag into plants and primary consumers and compared their bioavailability. Nine plant cultivars were grown in soil mixed with SS containing Ag, which revealed that bioaccumulation of Ag by plants is species-dependent. Ryegrass (the plant species with the greatest accumulation - up to 0.2 mg kg^-1) was then cultivated on a larger scale to expose snails and locusts for several weeks. While locusts did not accumulate Ag after two weeks of exposure, snails exhibited Ag bioaccumulation after 5 weeks when soil was accessible. Sulfidized Ag derived from AgNPs were less available (bioaccumulation up to 2.5 mg kg^-1) than the Ag from the original AgNPs (bioaccumulation up to 15 mg kg^-1). This transfer potential of Ag could have consequences for food webs due to chronic exposure linked to SS spreading practices. This study shows that transformations of AgNPs in treatment plants attenuate but do not completely eliminate the risk of Ag to plant and animal species SS.

Effects of substrates containing different concentrations of sewage sludge on physiological parameters and quality of Alibertia edulis (Rubiaceae) seedlings

Sewage sludge (SS), a solid residue of effluent treatment, is rich in organic matter and nutrients, while also containing heavy metals and other potential contaminants. The feasibility of employing SS as a substrate component for seedling production depends on its composition and dose, as well as on the tolerance limit of individual plant species. To expand the knowledge base on the use of SS in the production of plants native to the Brazilian Cerrado biome, we evaluated the physiological responses and quality of Alibertia edulis seedlings grown under distinct SS concentrations. Chlorophyll a fluorescence (ChlF), stomatal conductance (gs), leaf temperature (Lt), biomass, growth, and seedling quality were investigated. At 25%, SS improved growth, biomass, and seedling quality, while substrates containing 50% or more SS affected gs, Lt, and ChlF. Seedling quality was strongly worsened by SS at 75% and 100%, as shown by lower biomass and impaired growth, including leaf symmetry loss and leaf deformities possibly related to contaminants, particularly heavy metals. Accordingly, we conclude that SS exhibited potential as a fertilizer at concentrations below 50%, but exerted a toxic effect on seedlings at higher concentrations.

Impacts of earthworm introduction and cadmium on microbial communities composition and function in soil

Heavy metal contamination of soil has become a public concern. Earthworms are key players in the functioning and service of soil ecosystems, with comprehension of their introduction in the polluted soil offering new insights into the protection of soil resources. In the present study, we evaluated the effects of earthworm (Eisenia fetida) introduction and Cd (0, 10, 30, and 60 mg kg^-1 of Cd) exposure upon soil microbial community using 16S rRNA gene amplicon sequencing. Our research demonstrated that Gemmatimonadetes and Deinococcus-Thermus upregulated significantly, while Chryseolinea showed an obvious decreasing trend after earthworm introduction. In Cd contaminated soil, many genera exhibited a greater presence of Cd-dependent bacteria, namely Cd-tolerant bacteria such as Altererythrobacter and Luteimonas, and a decrease of sensitive bacteria, such as Amaricoccus and Haliangium. Moreover, functional prediction analysis of soil microbiota indicated that earthworm introduction and Cd exposure changed functional pathways of soil microorganisms. The results obtained in this study are beneficial for understanding soil microbial community impacted by earthworm, and for exploring Cd resistant or tolerant bacteria, with potentially significant findings for soil biodiversity and Cd bioremediation.

Toxic effects of ammonia and thermal stress on the intestinal microbiota and transcriptomic and metabolomic responses of Litopenaeus vannamei

Ammonia and thermal stress frequently have harmful effects on aquatic animals. The intestine is an important barrier allowing the body to defend against stress. In this study, we investigated the intestinal microbiota and transcriptomic and metabolomic responses of Litopenaeus vannamei subjected to individual and combined ammonia and thermal stress. The results showed that obvious variation in the intestinal microbiota was observed after stress exposure, with increased levels of Firmicutes and decreased levels of Bacteroidetes and Planctomycetes. Several genera of putatively beneficial bacteria (Demequina, Weissella and Bacteroides) were abundant, while Formosa, Kriegella, Ruegeria, Rhodopirellula and Lutimonas were decreased; pathogenic bacteria of the genus Vibrio were increased under individual stress but decreased under combined stress. The intestinal transcriptome revealed several immune-related differentially expressed genes associated with the peritrophic membrane and antimicrobial processes in contrasting accessions. Haemolymph metabolomic analysis showed that stress exposure disturbed the metabolic processes of the shrimp, especially amino acid metabolism. This study provides insight into the underlying mechanisms associated with the intestinal microbiota, immunity and metabolism of L.vannamei in response to ammonia and thermal stress; ten stress-related metabolite markers were identified, including L-lactic acid, gulonic acid, docosahexaenoic acid, l-lysine, gamma-aminobutyric acid, methylmalonic acid, trans-cinnamate, N-acetylserotonin, adenine, and dihydrouracil.