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Teuho J, Schultz J, Klén R, Juarez-Orozco LE, Knuuti J, Saraste A, Ono N, Kanaya S. Explainable deep-learning-based ischemia detection using hybrid O-15 H 2O perfusion positron emission tomography and computed tomography imaging with clinical data. J Nucl Cardiol 2024:101889. [PMID: 38852900 DOI: 10.1016/j.nuclcard.2024.101889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 04/30/2024] [Accepted: 05/25/2024] [Indexed: 06/11/2024]
Abstract
BACKGROUND We developed an explainable deep-learning (DL)-based classifier to identify flow-limiting coronary artery disease (CAD) by O-15 H2O perfusion positron emission tomography computed tomography (PET/CT) and coronary CT angiography (CTA) imaging. The classifier uses polar map images with numerical data and visualizes data findings. METHODS A DLmodel was implemented and evaluated on 138 individuals, consisting of a combined image-and data-based classifier considering 35 clinical, CTA, and PET variables. Data from invasive coronary angiography were used as reference. Performance was evaluated with clinical classification using accuracy (ACC), area under the receiver operating characteristic curve (AUC), F1 score (F1S), sensitivity (SEN), specificity (SPE), precision (PRE), net benefit, and Cohen's Kappa. Statistical testing was conducted using McNemar's test. RESULTS The DL model had a median ACC = 0.8478, AUC = 0.8481, F1S = 0.8293, SEN = 0.8500, SPE = 0.8846, and PRE = 0.8500. Improved detection of true-positive and false-negative cases, increased net benefit in thresholds up to 34%, and comparable Cohen's kappa was seen, reaching similar performance to clinical reading. Statistical testing revealed no significant differences between DL model and clinical reading. CONCLUSIONS The combined DL model is a feasible and an effective method in detection of CAD, allowing to highlight important data findings individually in interpretable manner.
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Affiliation(s)
- Jarmo Teuho
- Data Science Center, Nara Institute of Science and Technology, Nara, Japan; Turku PET Centre, University of Turku, Turku, Finland; Turku PET Centre, Turku University Hospital, Turku, Finland.
| | - Jussi Schultz
- Turku PET Centre, University of Turku, Turku, Finland; Turku PET Centre, Turku University Hospital, Turku, Finland
| | - Riku Klén
- Turku PET Centre, University of Turku, Turku, Finland; Turku PET Centre, Turku University Hospital, Turku, Finland
| | - Luis Eduardo Juarez-Orozco
- Department of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands; Department of Cardiology, Meader Medical Center, Amersfoort, the Netherlands
| | - Juhani Knuuti
- Turku PET Centre, University of Turku, Turku, Finland; Turku PET Centre, Turku University Hospital, Turku, Finland
| | - Antti Saraste
- Turku PET Centre, Turku University Hospital, Turku, Finland; Heart Centre, Turku University Hospital and University of Turku, Turku, Finland
| | - Naoaki Ono
- Data Science Center, Nara Institute of Science and Technology, Nara, Japan; Department of Science and Technology, Nara Institute of Science and Technology, Nara, Japan
| | - Shigehiko Kanaya
- Data Science Center, Nara Institute of Science and Technology, Nara, Japan; Department of Science and Technology, Nara Institute of Science and Technology, Nara, Japan
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Bors S, Abler D, Dietz M, Andrearczyk V, Fageot J, Nicod-Lalonde M, Schaefer N, DeKemp R, Kamani CH, Prior JO, Depeursinge A. Comparing various AI approaches to traditional quantitative assessment of the myocardial perfusion in [ 82Rb] PET for MACE prediction. Sci Rep 2024; 14:9644. [PMID: 38671059 PMCID: PMC11053111 DOI: 10.1038/s41598-024-60095-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 04/18/2024] [Indexed: 04/28/2024] Open
Abstract
Assessing the individual risk of Major Adverse Cardiac Events (MACE) is of major importance as cardiovascular diseases remain the leading cause of death worldwide. Quantitative Myocardial Perfusion Imaging (MPI) parameters such as stress Myocardial Blood Flow (sMBF) or Myocardial Flow Reserve (MFR) constitutes the gold standard for prognosis assessment. We propose a systematic investigation of the value of Artificial Intelligence (AI) to leverage [82 Rb] Silicon PhotoMultiplier (SiPM) PET MPI for MACE prediction. We establish a general pipeline for AI model validation to assess and compare the performance of global (i.e. average of the entire MPI signal), regional (17 segments), radiomics and Convolutional Neural Network (CNN) models leveraging various MPI signals on a dataset of 234 patients. Results showed that all regional AI models significantly outperformed the global model ( p < 0.001 ), where the best AUC of 73.9% (CI 72.5-75.3) was obtained with a CNN model. A regional AI model based on MBF averages from 17 segments fed to a Logistic Regression (LR) constituted an excellent trade-off between model simplicity and performance, achieving an AUC of 73.4% (CI 72.3-74.7). A radiomics model based on intensity features revealed that the global average was the least important feature when compared to other aggregations of the MPI signal over the myocardium. We conclude that AI models can allow better personalized prognosis assessment for MACE.
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Affiliation(s)
- Sacha Bors
- Nuclear Medicine and Molecular Imaging Department, Lausanne University Hospital, Lausanne, Switzerland
- Institute of Informatics, School of Management, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland
| | - Daniel Abler
- Department of Oncology, Lausanne University Hospital, Lausanne, Switzerland
- Institute of Informatics, School of Management, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland
| | - Matthieu Dietz
- INSERM U1060, CarMeN laboratory, University of Lyon, Lyon, France
| | - Vincent Andrearczyk
- Nuclear Medicine and Molecular Imaging Department, Lausanne University Hospital, Lausanne, Switzerland
- Institute of Informatics, School of Management, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland
| | - Julien Fageot
- AudioVisual Communications Laboratory (LCAV), EPFL, Lausanne, Switzerland
| | - Marie Nicod-Lalonde
- Nuclear Medicine and Molecular Imaging Department, Lausanne University Hospital, Lausanne, Switzerland
- University of Lausanne, Lausanne, Switzerland
| | - Niklaus Schaefer
- Nuclear Medicine and Molecular Imaging Department, Lausanne University Hospital, Lausanne, Switzerland
- University of Lausanne, Lausanne, Switzerland
| | - Robert DeKemp
- Division of Cardiology, University of Ottawa Heart Institute, Ottawa, ON, Canada
| | - Christel H Kamani
- Department of Cardiology, Lausanne University Hospital, Lausanne, Switzerland
| | - John O Prior
- Nuclear Medicine and Molecular Imaging Department, Lausanne University Hospital, Lausanne, Switzerland.
- University of Lausanne, Lausanne, Switzerland.
| | - Adrien Depeursinge
- Nuclear Medicine and Molecular Imaging Department, Lausanne University Hospital, Lausanne, Switzerland
- Institute of Informatics, School of Management, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland
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Lin C, Chang YC, Chiu HY, Cheng CH, Huang HM. Differentiation between normal and abnormal kidneys using 99mTc-DMSA SPECT with deep learning in paediatric patients. Clin Radiol 2023; 78:584-589. [PMID: 37244824 DOI: 10.1016/j.crad.2023.04.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 04/24/2023] [Accepted: 04/26/2023] [Indexed: 05/29/2023]
Abstract
AIM To investigate the feasibility of using deep learning (DL) to differentiate normal from abnormal (or scarred) kidneys using technetium-99m dimercaptosuccinic acid (99mTc-DMSA) single-photon-emission computed tomography (SPECT) in paediatric patients. MATERIAL AND METHODS Three hundred and one 99mTc-DMSA renal SPECT examinations were reviewed retrospectively. The 301 patients were split randomly into 261, 20, and 20 for training, validation, and testing data, respectively. The DL model was trained using three-dimensional (3D) SPECT images, two-dimensional (2D) maximum intensity projections (MIPs), and 2.5-dimensional (2.5D) MIPs (i.e., transverse, sagittal, and coronal views). Each DL model was trained to determine renal SPECT images into either normal or abnormal. Consensus reading results by two nuclear medicine physicians served as the reference standard. RESULTS The DL model trained by 2.5D MIPs outperformed that trained by either 3D SPECT images or 2D MIPs. The accuracy, sensitivity, and specificity of the 2.5D model for the differentiation between normal and abnormal kidneys were 92.5%, 90% and 95%, respectively. CONCLUSION The experimental results suggest that DL has the potential to differentiate normal from abnormal kidneys in children using 99mTc-DMSA SPECT imaging.
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Affiliation(s)
- C Lin
- Department of Nuclear Medicine, Chang Gung Memorial Hospital, No. 5, Fuxing Street, Gueishan District, Taoyuan 33305, Taiwan; School of Chinese Medicine, Chang Gung University, No. 259, Wenhua 1st Rd, Guishan District, Taoyuan 33302, Taiwan
| | - Y-C Chang
- Department of Nuclear Medicine, Chang Gung Memorial Hospital, No. 5, Fuxing Street, Gueishan District, Taoyuan 33305, Taiwan; Department of Medical Imaging and Radiological Sciences, College of Medicine, Chang Gung University, No. 259, Wenhua 1st Rd, Guishan District, Taoyuan 33302, Taiwan
| | - H-Y Chiu
- Department of Nuclear Medicine, Chang Gung Memorial Hospital, No. 5, Fuxing Street, Gueishan District, Taoyuan 33305, Taiwan
| | - C-H Cheng
- Department of Pediatrics, Chang Gung University, No. 259, Wenhua 1st Rd, Guishan District, Taoyuan 33302, Taiwan; Department of Pediatrics, Chang Gung Memorial Hospital, No. 5, Fuxing Street, Gueishan District, Taoyuan 33305, Taiwan
| | - H-M Huang
- Institute of Medical Device and Imaging, College of Medicine, National Taiwan University, No. 1, Sec. 1, Jen Ai Rd, Zhongzheng District, Taipei City 100, Taiwan.
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Leming MJ, Bron EE, Bruffaerts R, Ou Y, Iglesias JE, Gollub RL, Im H. Challenges of implementing computer-aided diagnostic models for neuroimages in a clinical setting. NPJ Digit Med 2023; 6:129. [PMID: 37443276 DOI: 10.1038/s41746-023-00868-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Accepted: 06/26/2023] [Indexed: 07/15/2023] Open
Abstract
Advances in artificial intelligence have cultivated a strong interest in developing and validating the clinical utilities of computer-aided diagnostic models. Machine learning for diagnostic neuroimaging has often been applied to detect psychological and neurological disorders, typically on small-scale datasets or data collected in a research setting. With the collection and collation of an ever-growing number of public datasets that researchers can freely access, much work has been done in adapting machine learning models to classify these neuroimages by diseases such as Alzheimer's, ADHD, autism, bipolar disorder, and so on. These studies often come with the promise of being implemented clinically, but despite intense interest in this topic in the laboratory, limited progress has been made in clinical implementation. In this review, we analyze challenges specific to the clinical implementation of diagnostic AI models for neuroimaging data, looking at the differences between laboratory and clinical settings, the inherent limitations of diagnostic AI, and the different incentives and skill sets between research institutions, technology companies, and hospitals. These complexities need to be recognized in the translation of diagnostic AI for neuroimaging from the laboratory to the clinic.
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Affiliation(s)
- Matthew J Leming
- Center for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.
- Massachusetts Alzheimer's Disease Research Center, Charlestown, MA, USA.
| | - Esther E Bron
- Department of Radiology and Nuclear Medicine, Erasmus MC, Rotterdam, The Netherlands
| | - Rose Bruffaerts
- Computational Neurology, Experimental Neurobiology Unit (ENU), Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
- Biomedical Research Institute, Hasselt University, Diepenbeek, Belgium
| | - Yangming Ou
- Boston Children's Hospital, 300 Longwood Ave, Boston, MA, USA
| | - Juan Eugenio Iglesias
- Center for Medical Image Computing, University College London, London, UK
- Martinos Center for Biomedical Imaging, Harvard Medical School, Boston, MA, USA
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Randy L Gollub
- Department of Psychiatry, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA
| | - Hyungsoon Im
- Center for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.
- Massachusetts Alzheimer's Disease Research Center, Charlestown, MA, USA.
- Department of Radiology, Massachusetts General Hospital, Boston, MA, USA.
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Zhang L, Liu B, Li S, Wang J, Mu Y, Zhou X, Sheng L. Deep learning-based measurement of echocardiographic data and its application in the diagnosis of sudden cardiac death. Biotechnol Genet Eng Rev 2023:1-13. [PMID: 37179495 DOI: 10.1080/02648725.2023.2213041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
This study aimed to evaluate the potential of deep learning applied to the measurement of echocardiographic data in patients with sudden cardiac death (SCD). 320 SCD patients who met the inclusion and exclusion criteria underwent clinical evaluation, including age, sex, BMI, hypertension, diabetes, cardiac function classification, and echocardiography. The diagnostic value of deep learning model was observed by dividing the patients into two groups: training group (n=160) and verification group (n=160), as well as two groups of healthy volunteers (n=200 for each group) during the same period. Logistic regression analysis showed that MLVWT, LVEDD, LVEF, LVOT-PG, LAD, E/e' were all risk factors for SCD. Subsequently, a deep learning-based model was trained using the collected images of the training group. The optimal model was selected based on the identification accuracy of the validation group and showed an accuracy of 91.8%, sensitivity of 80.00%, and specificity of 91.90% in the training group. The AUC value of the ROC curve of the model was 0.877 for the training group and 0.995 for the validation groups. This approach demonstrates high diagnostic value and accuracy in predicting SCD, which is clinically important for the early detection and diagnosis of SCD.
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Affiliation(s)
- Lu Zhang
- Department of cardiology, the Second Medical Center & National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital, Beijing, China
| | - Bohan Liu
- Department of cardiovascular Surgery, the First Medical Center of Chinese PLA General Hospital, Beijing, China
| | - Sulei Li
- Department of cardiology, the Second Medical Center & National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital, Beijing, China
| | - Jing Wang
- Cardiovascular Department, the 6th Medical Center, Chinese PLA General Hospital, Beijing, China
| | - Yang Mu
- Cardiovascular Department, the 6th Medical Center, Chinese PLA General Hospital, Beijing, China
| | - Xuan Zhou
- Department of cardiology, the Second Medical Center & National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital, Beijing, China
| | - Li Sheng
- Department of cardiology, the Second Medical Center & National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital, Beijing, China
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Zhang X, Dong X, Saripan MIB, Du D, Wu Y, Wang Z, Cao Z, Wen D, Liu Y, Marhaban MH. Deep learning PET/CT-based radiomics integrates clinical data: A feasibility study to distinguish between tuberculosis nodules and lung cancer. Thorac Cancer 2023. [PMID: 37183577 DOI: 10.1111/1759-7714.14924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 04/21/2023] [Accepted: 04/22/2023] [Indexed: 05/16/2023] Open
Abstract
BACKGROUND Radiomic diagnosis models generally consider only a single dimension of information, leading to limitations in their diagnostic accuracy and reliability. The integration of multiple dimensions of information into the deep learning model have the potential to improve its diagnostic capabilities. The purpose of study was to evaluate the performance of deep learning model in distinguishing tuberculosis (TB) nodules and lung cancer (LC) based on deep learning features, radiomic features, and clinical information. METHODS Positron emission tomography (PET) and computed tomography (CT) image data from 97 patients with LC and 77 patients with TB nodules were collected. One hundred radiomic features were extracted from both PET and CT imaging using the pyradiomics platform, and 2048 deep learning features were obtained through a residual neural network approach. Four models included traditional machine learning model with radiomic features as input (traditional radiomics), a deep learning model with separate input of image features (deep convolutional neural networks [DCNN]), a deep learning model with two inputs of radiomic features and deep learning features (radiomics-DCNN) and a deep learning model with inputs of radiomic features and deep learning features and clinical information (integrated model). The models were evaluated using area under the curve (AUC), sensitivity, accuracy, specificity, and F1-score metrics. RESULTS The results of the classification of TB nodules and LC showed that the integrated model achieved an AUC of 0.84 (0.82-0.88), sensitivity of 0.85 (0.80-0.88), and specificity of 0.84 (0.83-0.87), performing better than the other models. CONCLUSION The integrated model was found to be the best classification model in the diagnosis of TB nodules and solid LC.
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Affiliation(s)
- Xiaolei Zhang
- Faculty of Engineering, Universiti Putra Malaysia, Serdang, Malaysia
- Department of Biomedical Engineering, Chengde Medical University, Chengde, Hebei, China
| | - Xianling Dong
- Department of Biomedical Engineering, Chengde Medical University, Chengde, Hebei, China
- Hebei International Research Center of Medical Engineering and Hebei Provincial Key Laboratory of Nerve Injury and Repair, Chengde Medical University, Chengde, Hebei, China
| | | | - Dongyang Du
- School of Biomedical Engineering and Guangdong Province Key Laboratory of Medical Image Processing, Southern Medical University, Guangzhou, China
| | - Yanjun Wu
- Department of Biomedical Engineering, Chengde Medical University, Chengde, Hebei, China
| | - Zhongxiao Wang
- Department of Biomedical Engineering, Chengde Medical University, Chengde, Hebei, China
| | - Zhendong Cao
- Department of Radiology, the Affiliated Hospital of Chengde Medical University, Chengde, China
| | - Dong Wen
- Institute of Artificial Intelligence, University of Science and Technology Beijing, Beijing, China
| | - Yanli Liu
- Department of Biomedical Engineering, Chengde Medical University, Chengde, Hebei, China
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7
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Samaras AD, Moustakidis S, Apostolopoulos ID, Papandrianos N, Papageorgiou E. Classification models for assessing coronary artery disease instances using clinical and biometric data: an explainable man-in-the-loop approach. Sci Rep 2023; 13:6668. [PMID: 37095118 PMCID: PMC10125978 DOI: 10.1038/s41598-023-33500-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Accepted: 04/13/2023] [Indexed: 04/26/2023] Open
Abstract
The main goal driving this work is to develop computer-aided classification models relying on clinical data to identify coronary artery disease (CAD) instances with high accuracy while incorporating the expert's opinion as input, making it a "man-in-the-loop" approach. CAD is traditionally diagnosed in a definite manner by Invasive Coronary Angiography (ICA). A dataset was created using biometric and clinical data from 571 patients (21 total features, 43% ICA-confirmed CAD instances) along with the expert's diagnostic yield. Five machine learning classification algorithms were applied to the dataset. For the selection of the best feature set for each algorithm, three different parameter selection algorithms were used. Each ML model's performance was evaluated using common metrics, and the best resulting feature set for each is presented. A stratified ten-fold validation was used for the performance evaluation. This procedure was run both using the assessments of experts/doctors as input and without them. The significance of this paper lies in its innovative approach of incorporating the expert's opinion as input in the classification process, making it a "man-in-the-loop" approach. This approach not only increases the accuracy of the models but also provides an added layer of explainability and transparency, allowing for greater trust and confidence in the results. Maximum achievable accuracy, sensitivity, and specificity are 83.02%, 90.32%, and 85.49% when using the expert's diagnosis as input, compared to 78.29%, 76.61%, and 86.07% without the expert's diagnosis. The results of this study demonstrate the potential for this approach to improve the diagnosis of CAD and highlight the importance of considering the role of human expertise in the development of computer-aided classification models.
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Affiliation(s)
| | - Serafeim Moustakidis
- Department of Energy Systems, University of Thessaly, Larisa, Greece.
- AIDEAS OÜ, Tallinn, Estonia.
| | - Ioannis D Apostolopoulos
- Department of Energy Systems, University of Thessaly, Larisa, Greece
- Department of Medical Physics, School of Medicine, University of Patras, Patras, Greece
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8
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Kim YC, Choe YH. Automated identification of myocardial perfusion defects in dynamic cardiac computed tomography using deep learning. Phys Med 2023; 107:102555. [PMID: 36878134 DOI: 10.1016/j.ejmp.2023.102555] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 02/14/2023] [Accepted: 02/18/2023] [Indexed: 03/07/2023] Open
Abstract
PURPOSE The purpose of this study was to develop and evaluate deep convolutional neural network (CNN) models for quantifying myocardial blood flow (MBF) as well as for identifying myocardial perfusion defects in dynamic cardiac computed tomography (CT) images. METHODS Adenosine stress cardiac CT perfusion data acquired from 156 patients having or being suspected with coronary artery disease were considered for model development and validation. U-net-based deep CNN models were developed to segment the aorta and myocardium and to localize anatomical landmarks. Color-coded MBF maps were obtained in short-axis slices from the apex to the base level and were used to train a deep CNN classifier. Three binary classification models were built for the detection of perfusion defect in the left anterior descending artery (LAD), the right coronary artery (RCA), and the left circumflex artery (LCX) territories. RESULTS Mean Dice scores were 0.94 (±0.07) and 0.86 (±0.06) for the aorta and myocardial deep learning-based segmentations, respectively. With the localization U-net, mean distance errors were 3.5 (±3.5) mm and 3.8 (±2.4) mm for the basal and apical center points, respectively. The classification models identified perfusion defects with the accuracy of mean area under the receiver operating curve (AUROC) values of 0.959 (±0.023) for LAD, 0.949 (±0.016) for RCA, and 0.957 (±0.021) for LCX. CONCLUSION The presented method has the potential to fully automate the quantification of MBF and subsequently identify the main coronary artery territories with myocardial perfusion defects in dynamic cardiac CT perfusion.
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Affiliation(s)
- Yoon-Chul Kim
- Division of Digital Healthcare, College of Software and Digital Healthcare Convergence, Yonsei University, Wonju, South Korea
| | - Yeon Hyeon Choe
- Department of Radiology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea.
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Anish TP, Joe Prathap PM. An efficient and low complex model for optimal RBM features with weighted score-based ensemble multi-disease prediction. Comput Methods Biomech Biomed Engin 2023; 26:350-372. [PMID: 36218238 DOI: 10.1080/10255842.2022.2129969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Multi-disease prediction is regarded as the capacity to simultaneously identify various diseases that are expected to be affected an individual at a certain period. These multiple diseases are seemed to be at various progression levels and need to be detected in the patient at the time of clinical visits. Diverse studies in the literature have included the predictive models for particular diseases yet, it is unable to notice humans with multiple diseases since humans are mostly suffered not only from a single disease but also from multiple diseases. Hence, this article aims to implement a novel multi-disease prediction model using an ensemble learning approach with deep features. The required data for the multi-disease prediction is collected from the standard datasets. Then, the collected data are given into the "Deep Belief Network (DBN)" approach, where the features are obtained from the RBM layers. These RBM features are tuned with the help of Deviation-based Hybrid Grasshopper Barnacles Mating Optimization (D-HGBMO) for improving the prediction performance. The optimized RBM features are considered in the ensemble learning model named Ensemble, in which the multi-disease prediction is performed with "Deep Neural Network (DNN), Extreme Learning Machine (ELM), and Long Short Term Memory." The predicted score from three classifiers is used in the optimized weighted score and thresholding-based final prediction using the same D-HGBMO for determining the accurate multi-disease prediction results. The experimental results show the effective performance of the proposed model by comparing it with the existing classifiers with the help of different quantitative measures.
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Affiliation(s)
- T P Anish
- Assistant Professor, Department of Computer Science and Engineering, R.M.K. College of Engineering and Technology, Puduvoyal, India
| | - P M Joe Prathap
- Professor, Department of Computer Science and Engineering, R.M.D. Engineering College, Kavaraipettai, India
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10
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Apostolopoulos ID, Papandrianos NI, Feleki A, Moustakidis S, Papageorgiou EI. Deep learning-enhanced nuclear medicine SPECT imaging applied to cardiac studies. EJNMMI Phys 2023; 10:6. [PMID: 36705775 PMCID: PMC9883373 DOI: 10.1186/s40658-022-00522-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 12/19/2022] [Indexed: 01/28/2023] Open
Abstract
Deep learning (DL) has a growing popularity and is a well-established method of artificial intelligence for data processing, especially for images and videos. Its applications in nuclear medicine are broad and include, among others, disease classification, image reconstruction, and image de-noising. Positron emission tomography (PET) and single-photon emission computerized tomography (SPECT) are major image acquisition technologies in nuclear medicine. Though several studies have been conducted to apply DL in many nuclear medicine domains, such as cancer detection and classification, few studies have employed such methods for cardiovascular disease applications. The present paper reviews recent DL approaches focused on cardiac SPECT imaging. Extensive research identified fifty-five related studies, which are discussed. The review distinguishes between major application domains, including cardiovascular disease diagnosis, SPECT attenuation correction, image denoising, full-count image estimation, and image reconstruction. In addition, major findings and dominant techniques employed for the mentioned task are revealed. Current limitations of DL approaches and future research directions are discussed.
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Affiliation(s)
- Ioannis D. Apostolopoulos
- grid.11047.330000 0004 0576 5395Department of Medical Physics, School of Medicine, University of Patras, 26504 Patras, Greece ,grid.410558.d0000 0001 0035 6670Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece
| | - Nikolaos I. Papandrianos
- grid.410558.d0000 0001 0035 6670Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece
| | - Anna Feleki
- grid.410558.d0000 0001 0035 6670Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece
| | - Serafeim Moustakidis
- grid.410558.d0000 0001 0035 6670Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece ,AIDEAS OÜ, 10117 Tallinn, Estonia
| | - Elpiniki I. Papageorgiou
- grid.410558.d0000 0001 0035 6670Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece
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Papandrianos NI, Apostolopoulos ID, Feleki A, Moustakidis S, Kokkinos K, Papageorgiou EI. AI-based classification algorithms in SPECT myocardial perfusion imaging for cardiovascular diagnosis: a review. Nucl Med Commun 2023; 44:1-11. [PMID: 36514926 DOI: 10.1097/mnm.0000000000001634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
In the last few years, deep learning has made a breakthrough and established its position in machine learning classification problems in medical image analysis. Deep learning has recently displayed remarkable applicability in a range of different medical applications, as well as in nuclear cardiology. This paper implements a literature review protocol and reports the latest advances in artificial intelligence (AI)-based classification in SPECT myocardial perfusion imaging in heart disease diagnosis. The representative and most recent works are reported to demonstrate the use of AI and deep learning technologies in medical image analysis in nuclear cardiology for cardiovascular diagnosis. This review also analyses the primary outcomes of the presented research studies and suggests future directions focusing on the explainability of the deployed deep-learning systems in clinical practice.
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Affiliation(s)
| | | | - Anna Feleki
- Department of Energy Systems, University of Thessaly, Larisa, Greece
| | - Serafeim Moustakidis
- Department of Energy Systems, University of Thessaly, Larisa, Greece
- AIDEAS OÜ, Tallinn, Estonia
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12
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Ultrasonic Imaging of Cardiovascular Disease Based on Image Processor Analysis of Hard Plaque Characteristics. BIOMED RESEARCH INTERNATIONAL 2022; 2022:4304524. [PMID: 36277887 PMCID: PMC9584660 DOI: 10.1155/2022/4304524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 09/07/2022] [Accepted: 09/22/2022] [Indexed: 11/17/2022]
Abstract
Cardiovascular disease detection and analysis using ultrasonic imaging expels errors in manual clinical trials with precise outcomes. It requires a combination of smart computing systems and intelligent image processors. The disease characteristics are analyzed based on the configuration and precise tuning of the processing device. In this article, a characteristic extraction technique (CET) using knowledge learning (KL) is introduced to improve the analysis precision. The proposed method requires optimal selection of disease features and trained similar datasets for improving the characteristic extraction. The disease attributes and accuracy are identified using the standard knowledge update. The image and data features are segmented using the variable processor configuration to prevent false rates. The false rates due to unidentifiable plaque characteristics result in weak knowledge updates. Therefore, the segmentation and data extraction are unanimously performed to prevent feature misleads. The knowledge base is updated using the extracted and identified plaque characteristics for consecutive image analysis. The processor configurations are manageable using the updated knowledge and characteristics to improve precision. The proposed method is verified using precision, characteristic update, training rate, extraction ratio, and time factor.
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13
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Wang X, Wang J, Wang W, Zhu M, Guo H, Ding J, Sun J, Zhu D, Duan Y, Chen X, Zhang P, Wu Z, He K. Using artificial intelligence in the development of diagnostic models of coronary artery disease with imaging markers: A scoping review. Front Cardiovasc Med 2022; 9:945451. [PMID: 36267636 PMCID: PMC9577031 DOI: 10.3389/fcvm.2022.945451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 08/31/2022] [Indexed: 11/13/2022] Open
Abstract
Background Coronary artery disease (CAD) is a progressive disease of the blood vessels supplying the heart, which leads to coronary artery stenosis or obstruction and is life-threatening. Early diagnosis of CAD is essential for timely intervention. Imaging tests are widely used in diagnosing CAD, and artificial intelligence (AI) technology is used to shed light on the development of new imaging diagnostic markers. Objective We aim to investigate and summarize how AI algorithms are used in the development of diagnostic models of CAD with imaging markers. Methods This scoping review followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) guideline. Eligible articles were searched in PubMed and Embase. Based on the predefined included criteria, articles on coronary heart disease were selected for this scoping review. Data extraction was independently conducted by two reviewers, and a narrative synthesis approach was used in the analysis. Results A total of 46 articles were included in the scoping review. The most common types of imaging methods complemented by AI included single-photon emission computed tomography (15/46, 32.6%) and coronary computed tomography angiography (15/46, 32.6%). Deep learning (DL) (41/46, 89.2%) algorithms were used more often than machine learning algorithms (5/46, 10.8%). The models yielded good model performance in terms of accuracy, sensitivity, specificity, and AUC. However, most of the primary studies used a relatively small sample (n < 500) in model development, and only few studies (4/46, 8.7%) carried out external validation of the AI model. Conclusion As non-invasive diagnostic methods, imaging markers integrated with AI have exhibited considerable potential in the diagnosis of CAD. External validation of model performance and evaluation of clinical use aid in the confirmation of the added value of markers in practice. Systematic review registration [https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42022306638], identifier [CRD42022306638].
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Affiliation(s)
- Xiao Wang
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China
| | - Junfeng Wang
- Division of Pharmacoepidemiology and Clinical Pharmacology, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, Netherlands
| | - Wenjun Wang
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China
| | - Mingxiang Zhu
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China
| | - Hua Guo
- Department of Pulmonary and Critical Care Medicine, Chinese PLA General Hospital, Beijing, China
| | - Junyu Ding
- Department of Pulmonary and Critical Care Medicine, Chinese PLA General Hospital, Beijing, China
| | - Jin Sun
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China
| | - Di Zhu
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China
| | - Yongjie Duan
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China
| | - Xu Chen
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China
| | - Peifang Zhang
- BioMind Technology, Zhongguancun Medical Engineering Center, Beijing, China
| | - Zhenzhou Wu
- BioMind Technology, Zhongguancun Medical Engineering Center, Beijing, China
| | - Kunlun He
- Key Laboratory of Ministry of Industry and Information Technology of Biomedical Engineering and Translational Medicine, Chinese PLA General Hospital, Beijing, China,Beijing Key Laboratory for Precision Medicine of Chronic Heart Failure, Chinese PLA General Hospital, Beijing, China,Medical Big Data Research Center, Chinese PLA General Hospital, Beijing, China,*Correspondence: Kunlun He, ; orcid.org/0000-0002-3335-5700
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14
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Deep Learning Assessment for Mining Important Medical Image Features of Various Modalities. Diagnostics (Basel) 2022; 12:diagnostics12102333. [DOI: 10.3390/diagnostics12102333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 09/13/2022] [Accepted: 09/22/2022] [Indexed: 11/16/2022] Open
Abstract
Deep learning (DL) is a well-established pipeline for feature extraction in medical and nonmedical imaging tasks, such as object detection, segmentation, and classification. However, DL faces the issue of explainability, which prohibits reliable utilisation in everyday clinical practice. This study evaluates DL methods for their efficiency in revealing and suggesting potential image biomarkers. Eleven biomedical image datasets of various modalities are utilised, including SPECT, CT, photographs, microscopy, and X-ray. Seven state-of-the-art CNNs are employed and tuned to perform image classification in tasks. The main conclusion of the research is that DL reveals potential biomarkers in several cases, especially when the models are trained from scratch in domains where low-level features such as shapes and edges are not enough to make decisions. Furthermore, in some cases, device acquisition variations slightly affect the performance of DL models.
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15
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An Explainable Classification Method of SPECT Myocardial Perfusion Images in Nuclear Cardiology Using Deep Learning and Grad-CAM. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12157592] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Background: This study targets the development of an explainable deep learning methodology for the automatic classification of coronary artery disease, utilizing SPECT MPI images. Deep learning is currently judged as non-transparent due to the model’s complex non-linear structure, and thus, it is considered a «black box», making it hard to gain a comprehensive understanding of its internal processes and explain its behavior. Existing explainable artificial intelligence tools can provide insights into the internal functionality of deep learning and especially of convolutional neural networks, allowing transparency and interpretation. Methods: This study seeks to address the identification of patients’ CAD status (infarction, ischemia or normal) by developing an explainable deep learning pipeline in the form of a handcrafted convolutional neural network. The proposed RGB-CNN model utilizes various pre- and post-processing tools and deploys a state-of-the-art explainability tool to produce more interpretable predictions in decision making. The dataset includes cases from 625 patients as stress and rest representations, comprising 127 infarction, 241 ischemic, and 257 normal cases previously classified by a doctor. The imaging dataset was split into 20% for testing and 80% for training, of which 15% was further used for validation purposes. Data augmentation was employed to increase generalization. The efficacy of the well-known Grad-CAM-based color visualization approach was also evaluated in this research to provide predictions with interpretability in the detection of infarction and ischemia in SPECT MPI images, counterbalancing any lack of rationale in the results extracted by the CNNs. Results: The proposed model achieved 93.3% accuracy and 94.58% AUC, demonstrating efficient performance and stability. Grad-CAM has shown to be a valuable tool for explaining CNN-based judgments in SPECT MPI images, allowing nuclear physicians to make fast and confident judgments by using the visual explanations offered. Conclusions: Prediction results indicate a robust and efficient model based on the deep learning methodology which is proposed for CAD diagnosis in nuclear medicine.
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16
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Papandrianos NI, Feleki A, Papageorgiou EI, Martini C. Deep Learning-Based Automated Diagnosis for Coronary Artery Disease Using SPECT-MPI Images. J Clin Med 2022; 11:jcm11133918. [PMID: 35807203 PMCID: PMC9267142 DOI: 10.3390/jcm11133918] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 06/28/2022] [Accepted: 06/29/2022] [Indexed: 12/12/2022] Open
Abstract
(1) Background: Single-photon emission computed tomography (SPECT) myocardial perfusion imaging (MPI) is a long-established estimation methodology for medical diagnosis using image classification illustrating conditions in coronary artery disease. For these procedures, convolutional neural networks have proven to be very beneficial in achieving near-optimal accuracy for the automatic classification of SPECT images. (2) Methods: This research addresses the supervised learning-based ideal observer image classification utilizing an RGB-CNN model in heart images to diagnose CAD. For comparison purposes, we employ VGG-16 and DenseNet-121 pre-trained networks that are indulged in an image dataset representing stress and rest mode heart states acquired by SPECT. In experimentally evaluating the method, we explore a wide repertoire of deep learning network setups in conjunction with various robust evaluation and exploitation metrics. Additionally, to overcome the image dataset cardinality restrictions, we take advantage of the data augmentation technique expanding the set into an adequate number. Further evaluation of the model was performed via 10-fold cross-validation to ensure our model's reliability. (3) Results: The proposed RGB-CNN model achieved an accuracy of 91.86%, while VGG-16 and DenseNet-121 reached 88.54% and 86.11%, respectively. (4) Conclusions: The abovementioned experiments verify that the newly developed deep learning models may be of great assistance in nuclear medicine and clinical decision-making.
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Affiliation(s)
- Nikolaos I. Papandrianos
- Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece; (A.F.); (E.I.P.)
- Correspondence: ; Tel.: +30-693-6064613
| | - Anna Feleki
- Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece; (A.F.); (E.I.P.)
| | - Elpiniki I. Papageorgiou
- Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500 Larisa, Greece; (A.F.); (E.I.P.)
| | - Chiara Martini
- Department of Diagnostic, Parma University Hospital, Via Gramsci 14, 43125 Parma, Italy;
- Department of Medicine and Surgery, Section of Radiology, University of Parma, Maggiore Hospital, Via Gramsci 14, 43125 Parma, Italy
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17
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Papandrianos NI, Apostolopoulos ID, Feleki A, Apostolopoulos DJ, Papageorgiou EI. Deep learning exploration for SPECT MPI polar map images classification in coronary artery disease. Ann Nucl Med 2022; 36:823-833. [PMID: 35771376 DOI: 10.1007/s12149-022-01762-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Accepted: 06/09/2022] [Indexed: 11/27/2022]
Abstract
OBJECTIVE The exploration and the implementation of a deep learning method using a state-of-the-art convolutional neural network for the classification of polar maps represent myocardial perfusion for the detection of coronary artery disease. SUBJECTS AND METHODS In the proposed research, the dataset includes stress and rest polar maps in attenuation-corrected (AC) and non-corrected (NAC) format, counting specifically 144 normal and 170 pathological cases. Due to the small number of the dataset, the following methods were implemented: First, transfer learning was conducted using VGG16, which is applied broadly in medical industry. Furthermore, data augmentation was utilized, wherein the images are rotated and flipped for expanding the dataset. Secondly, we evaluated a custom convolutional neural network called RGB CNN, which utilizes fewer parameters and is more lightweight. In addition, we utilized the k-fold validation for evaluating variability and overall performance of the examined model. RESULTS Our RGB CNN model achieved an agreement rating of 92.07% with a loss of 0.2519. The transfer learning technique (VGG16) attained 95.83% accuracy. CONCLUSIONS The proposed model could be an effective tool for medical classification problems, in the case of polar map data acquired from myocardial perfusion images.
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Affiliation(s)
- Nikolaos I Papandrianos
- Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500, Larisa, Greece.
| | | | - Anna Feleki
- Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500, Larisa, Greece
| | | | - Elpiniki I Papageorgiou
- Department of Energy Systems, University of Thessaly, Gaiopolis Campus, 41500, Larisa, Greece
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18
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Al-Absi HRH, Islam MT, Refaee MA, Chowdhury MEH, Alam T. Cardiovascular Disease Diagnosis from DXA Scan and Retinal Images Using Deep Learning. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22124310. [PMID: 35746092 PMCID: PMC9228833 DOI: 10.3390/s22124310] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2022] [Revised: 05/17/2022] [Accepted: 05/17/2022] [Indexed: 05/08/2023]
Abstract
Cardiovascular diseases (CVD) are the leading cause of death worldwide. People affected by CVDs may go undiagnosed until the occurrence of a serious heart failure event such as stroke, heart attack, and myocardial infraction. In Qatar, there is a lack of studies focusing on CVD diagnosis based on non-invasive methods such as retinal image or dual-energy X-ray absorptiometry (DXA). In this study, we aimed at diagnosing CVD using a novel approach integrating information from retinal images and DXA data. We considered an adult Qatari cohort of 500 participants from Qatar Biobank (QBB) with an equal number of participants from the CVD and the control groups. We designed a case-control study with a novel multi-modal (combining data from multiple modalities-DXA and retinal images)-to propose a deep learning (DL)-based technique to distinguish the CVD group from the control group. Uni-modal models based on retinal images and DXA data achieved 75.6% and 77.4% accuracy, respectively. The multi-modal model showed an improved accuracy of 78.3% in classifying CVD group and the control group. We used gradient class activation map (GradCAM) to highlight the areas of interest in the retinal images that influenced the decisions of the proposed DL model most. It was observed that the model focused mostly on the centre of the retinal images where signs of CVD such as hemorrhages were present. This indicates that our model can identify and make use of certain prognosis markers for hypertension and ischemic heart disease. From DXA data, we found higher values for bone mineral density, fat content, muscle mass and bone area across majority of the body parts in CVD group compared to the control group indicating better bone health in the Qatari CVD cohort. This seminal method based on DXA scans and retinal images demonstrate major potentials for the early detection of CVD in a fast and relatively non-invasive manner.
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Affiliation(s)
- Hamada R. H. Al-Absi
- College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar;
| | - Mohammad Tariqul Islam
- Computer Science Department, Southern Connecticut State University, New Haven, CT 06515, USA;
| | | | | | - Tanvir Alam
- College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar;
- Correspondence:
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19
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Sengupta PP, Tokodi M. Automated Interpretation of Myocardial Perfusion Images: Tell Me AI Where to Look. JACC Cardiovasc Imaging 2022; 15:1103-1106. [PMID: 35680218 DOI: 10.1016/j.jcmg.2022.04.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 04/21/2022] [Indexed: 11/29/2022]
Affiliation(s)
- Partho P Sengupta
- Division of Cardiovascular Diseases, Rutgers Robert Wood Johnson Medical School, New Brunswick, New Jersey, USA.
| | - Márton Tokodi
- Division of Cardiovascular Diseases, Rutgers Robert Wood Johnson Medical School, New Brunswick, New Jersey, USA; Heart and Vascular Center, Semmelweis University, Budapest, Hungary
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20
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Althobaiti MM, Ashour AA, Alhindi NA, Althobaiti A, Mansour RF, Gupta D, Khanna A. Deep Transfer Learning-Based Breast Cancer Detection and Classification Model Using Photoacoustic Multimodal Images. BIOMED RESEARCH INTERNATIONAL 2022; 2022:3714422. [PMID: 35572730 PMCID: PMC9098312 DOI: 10.1155/2022/3714422] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Revised: 03/29/2022] [Accepted: 04/07/2022] [Indexed: 01/28/2023]
Abstract
The rapid development of technologies in biomedical research has enriched and broadened the range of medical equipment. Magnetic resonance imaging, ultrasonic imaging, and optical imaging have been discovered by diverse research communities to design multimodal systems, which is essential for biomedical applications. One of the important tools is photoacoustic multimodal imaging (PAMI) which combines the concepts of optics and ultrasonic systems. At the same time, earlier detection of breast cancer becomes essential to reduce mortality. The recent advancements of deep learning (DL) models enable detection and classification the breast cancer using biomedical images. This article introduces a novel social engineering optimization with deep transfer learning-based breast cancer detection and classification (SEODTL-BDC) model using PAI. The intention of the SEODTL-BDC technique is to detect and categorize the presence of breast cancer using ultrasound images. Primarily, bilateral filtering (BF) is applied as an image preprocessing technique to remove noise. Besides, a lightweight LEDNet model is employed for the segmentation of biomedical images. In addition, residual network (ResNet-18) model can be utilized as a feature extractor. Finally, SEO with recurrent neural network (RNN) model, named SEO-RNN classifier, is applied to allot proper class labels to the biomedical images. The performance validation of the SEODTL-BDC technique is carried out using benchmark dataset and the experimental outcomes pointed out the supremacy of the SEODTL-BDC approach over the existing methods.
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Affiliation(s)
- Maha M. Althobaiti
- Department of Computer Science, College of Computing and Information Technology, Taif University, P.O.Box 11099, Taif 21944, Saudi Arabia
| | - Amal Adnan Ashour
- Department of Oral & Maxillofacial Surgery and Diagnostic Sciences, Faculty of Dentistry, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Nada A. Alhindi
- Oral Diagnostic Sciences Department, Faculty of Dentistry, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Asim Althobaiti
- Regional Laboratory and Blood Bank, Taif Health, Taif, Saudi Arabia
| | - Romany F. Mansour
- Department of Mathematics, Faculty of Science, New Valley University, El-Kharga 72511, Egypt
| | - Deepak Gupta
- Department of Computer Science & Engineering, Maharaja Agrasen Institute of Technology, Delhi, India
| | - Ashish Khanna
- Department of Computer Science & Engineering, Maharaja Agrasen Institute of Technology, Delhi, India
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21
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Applications of Generative Adversarial Networks (GANs) in Positron Emission Tomography (PET) imaging: A review. Eur J Nucl Med Mol Imaging 2022; 49:3717-3739. [PMID: 35451611 DOI: 10.1007/s00259-022-05805-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 04/12/2022] [Indexed: 11/04/2022]
Abstract
PURPOSE This paper reviews recent applications of Generative Adversarial Networks (GANs) in Positron Emission Tomography (PET) imaging. Recent advances in Deep Learning (DL) and GANs catalysed the research of their applications in medical imaging modalities. As a result, several unique GAN topologies have emerged and been assessed in an experimental environment over the last two years. METHODS The present work extensively describes GAN architectures and their applications in PET imaging. The identification of relevant publications was performed via approved publication indexing websites and repositories. Web of Science, Scopus, and Google Scholar were the major sources of information. RESULTS The research identified a hundred articles that address PET imaging applications such as attenuation correction, de-noising, scatter correction, removal of artefacts, image fusion, high-dose image estimation, super-resolution, segmentation, and cross-modality synthesis. These applications are presented and accompanied by the corresponding research works. CONCLUSION GANs are rapidly employed in PET imaging tasks. However, specific limitations must be eliminated to reach their full potential and gain the medical community's trust in everyday clinical practice.
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22
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Gherghe M, Lazar AM, Mutuleanu MD, Stanciu AE, Martin S. Radiomics Analysis of [18F]FDG PET/CT Thyroid Incidentalomas: How Can It Improve Patients’ Clinical Management? A Systematic Review from the Literature. Diagnostics (Basel) 2022; 12:diagnostics12020471. [PMID: 35204561 PMCID: PMC8870948 DOI: 10.3390/diagnostics12020471] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 02/07/2022] [Accepted: 02/09/2022] [Indexed: 01/01/2023] Open
Abstract
Background: We performed a systematic review of the literature to provide an overview of the application of PET-based radiomics of [18F]FDG-avid thyroid incidentalomas and to discuss the additional value of PET volumetric parameters and radiomic features over clinical data. Methods: The most relevant databases were explored using an algorithm constructed based on a combination of terms related to our subject and English-language articles published until October 2021 were considered. Among the 247 identified articles, 19 studies were screened for eligibility and 11 met the criteria, with 4 studies including radiomics analyses. Results: We summarized the available literature based on a study of PET volumetric parameters and radiomics. Ten articles provided accurate details about volumetric parameters and their prospective value in tumour assessment. We included the data provided by these articles in a sub-analysis, but could not obtain statistically relevant results. Four publications analyzed the diagnostic potential of radiomics and the possibility of creating precise predictive models, their corresponding quality score being assessed. Conclusions: The use of PET volumetric parameters and radiomics analysis in patients with [18F]FDG-avid thyroid incidentalomas outlines a great prospect in diagnosis and stratification of patients with malignant nodules and may represent a way of limiting the need for unnecessary invasive procedures; however, further studies need to be performed for a standardization of the method.
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Affiliation(s)
- Mirela Gherghe
- Nuclear Medicine Department, University of Medicine and Pharmacy Carol Davila Bucharest, 050474 Bucharest, Romania; (M.G.); (M.-D.M.)
- Nuclear Medicine Department, Institute of Oncology “Profesor Doctor Alexandru Trestioreanu”, 022328 Bucharest, Romania
| | - Alexandra Maria Lazar
- Nuclear Medicine Department, Institute of Oncology “Profesor Doctor Alexandru Trestioreanu”, 022328 Bucharest, Romania
- Correspondence:
| | - Mario-Demian Mutuleanu
- Nuclear Medicine Department, University of Medicine and Pharmacy Carol Davila Bucharest, 050474 Bucharest, Romania; (M.G.); (M.-D.M.)
- Nuclear Medicine Department, Institute of Oncology “Profesor Doctor Alexandru Trestioreanu”, 022328 Bucharest, Romania
| | - Adina Elena Stanciu
- Carcinogenesis and Molecular Biology Department, Institute of Oncology “Profesor Doctor Alexandru Trestioreanu”, 022328 Bucharest, Romania;
| | - Sorina Martin
- Endocrinology Department, Elias Emergency University Clinic Hospital, 011461 Bucharest, Romania;
- Endocrinology Department, University of Medicine and Pharmacy Carol Davila Bucharest, 050474 Bucharest, Romania
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Radiomics in Cardiovascular Disease Imaging: from Pixels to the Heart of the Problem. CURRENT CARDIOVASCULAR IMAGING REPORTS 2022. [DOI: 10.1007/s12410-022-09563-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Abstract
Purpose of Review
This review of the literature aims to present potential applications of radiomics in cardiovascular radiology and, in particular, in cardiac imaging.
Recent Findings
Radiomics and machine learning represent a technological innovation which may be used to extract and analyze quantitative features from medical images. They aid in detecting hidden pattern in medical data, possibly leading to new insights in pathophysiology of different medical conditions. In the recent literature, radiomics and machine learning have been investigated for numerous potential applications in cardiovascular imaging. They have been proposed to improve image acquisition and reconstruction, for anatomical structure automated segmentation or automated characterization of cardiologic diseases.
Summary
The number of applications for radiomics and machine learning is continuing to rise, even though methodological and implementation issues still limit their use in daily practice. In the long term, they may have a positive impact in patient management.
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Wang J, Fan X, Qin S, Shi K, Zhang H, Yu F. Exploration of the efficacy of radiomics applied to left ventricular tomograms obtained from D-SPECT MPI for the auxiliary diagnosis of myocardial ischemia in CAD. Int J Cardiovasc Imaging 2021; 38:465-472. [PMID: 34591200 DOI: 10.1007/s10554-021-02413-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 09/09/2021] [Indexed: 11/26/2022]
Abstract
To explore the feasibility and efficacy of radiomics with left ventricular tomograms obtained from D-SPECT myocardial perfusion imaging (MPI) for auxiliary diagnosis of myocardial ischemia in coronary artery disease (CAD). The images of 103 patients with CAD myocardial ischemia between September 2020 and April 2021 were retrospectively selected. After information desensitization processing, format conversion, annotation using the Labelme tool on an open-source platform, lesion classification, and establishment of a database, the images were cropped for analysis. The ResNet18 model was used to automate two steps (classification and segmentation) with five randomization, training and validation steps. The sensitivity, specificity, positive likelihood ratio, negative likelihood ratio, positive predictive value, negative predictive value, Youden's index, agreement rate, and kappa value were calculated as evaluation indexes of the classification results for each training-validation step; then, receiver operating characteristics (ROC) curves were drawn, and the areas under the curve (AUCs) were calculated. The Dice coefficient, intersection over union, and Hausdorff distance were calculated as evaluation indexes of the segmentation results for each training-validation step; then, the predicted images were exported. Under the existing conditions, the radiomics model used in this study had an AUC above 0.95 in identifying the presence or absence of myocardial ischemia; in the prediction of the extent of myocardial ischemia, its evaluation index distribution is also close to that of the gold standard. Radiomics can be feasibly applied to left ventricular tomograms obtained from D-SPECT MPI for auxiliary diagnosis. With more in-depth research and the development of technology, adding this method to the existing auxiliary diagnosis will likely further improve the diagnostic accuracy and efficiency, and patients will therefore benefit.
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Affiliation(s)
- Junpeng Wang
- Medical College, Anhui University of Science and Technology, Taifeng RD. 168, Huainan, 232001, People's Republic of China
| | - Xin Fan
- Department of Nuclear Medicine, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Yanchang RD. 301, Shanghai, 200072, People's Republic of China
| | - ShanShan Qin
- Department of Nuclear Medicine, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Yanchang RD. 301, Shanghai, 200072, People's Republic of China
| | - Kuangyu Shi
- Department of Nuclear Medicine, University of Bern, Bern, Switzerland
- Department of Informatics, Technical University of Munich, Munich, Germany
| | - Han Zhang
- Department of Nuclear Medicine, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Yanchang RD. 301, Shanghai, 200072, People's Republic of China.
| | - Fei Yu
- Department of Nuclear Medicine, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Yanchang RD. 301, Shanghai, 200072, People's Republic of China.
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