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Panayides JL, Riley DL, Hasenmaile F, van Otterlo WAL. The role of silicon in drug discovery: a review. RSC Med Chem 2024; 15:3286-3344. [PMID: 39430101 PMCID: PMC11484438 DOI: 10.1039/d4md00169a] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 06/07/2024] [Indexed: 10/22/2024] Open
Abstract
This review aims to highlight the role of silicon in drug discovery. Silicon and carbon are often regarded as being similar with silicon located directly beneath carbon in the same group in the periodic table. That being noted, in many instances a clear dichotomy also exists between silicon and carbon, and these differences often lead to vastly different physiochemical and biological properties. As a result, the utility of silicon in drug discovery has attracted significant attention and has grown rapidly over the past decade. This review showcases some recent advances in synthetic organosilicon chemistry and examples of the ways in which silicon has been employed in the drug-discovery field.
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Affiliation(s)
- Jenny-Lee Panayides
- Pharmaceutical Technologies, Future Production: Chemicals, Council for Scientific and Industrial Research (CSIR) Meiring Naude Road, Brummeria Pretoria South Africa
| | - Darren Lyall Riley
- Department of Chemistry, Faculty of Natural and Agricultural Sciences, University of Pretoria Lynnwood Road Pretoria South Africa
| | - Felix Hasenmaile
- Department of Chemistry and Polymer Science, Stellenbosch University Matieland Stellenbosch 7600 South Africa
| | - Willem A L van Otterlo
- Department of Chemistry and Polymer Science, Stellenbosch University Matieland Stellenbosch 7600 South Africa
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2
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Filgueiras LA, de Andrade FDCP, Iwao Horita S, Shirsat SD, Achal V, Rai M, Henriques-Pons A, Mendes AN. Analysis of SIKVAV's receptor affinity, pharmacokinetics, and pharmacological characteristics: a matrikine with potent biological function. J Biomol Struct Dyn 2024:1-23. [PMID: 38345036 DOI: 10.1080/07391102.2024.2313709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 01/27/2024] [Indexed: 03/08/2025]
Abstract
Matrikines are biologically active peptides generated from fragments fragmentation of extracellular matrix components (ECM) that are functionally distinct from the original full-length molecule. The active matricryptic sites can be unmasked by ECM components enzymatic degradation or multimerization, heterotypic binding, adsorption to other molecules, cell-mediated mechanical forces, exposure to reactive oxygen species, ECM denaturation, and others. Laminin α1-derived peptide (SIKVAV) is a bioactive peptide derived from laminin-111 that participates in tumor development, cell proliferation, angiogenesis in various cell types. SIKVAV has also a potential pharmaceutical activity that may be used for tissue regeneration and bioengineering in Alzheimer's disease and muscular dystrophies. In this work, we made computational analyzes of SIKVAV regarding the ADMET panel, that stands for Administration, Distribution, Metabolism, Excretion, and Toxicity. Docking analyzes using the α3β1 and α6β1 integrin receptors were performed to fill in the gaps in the SIKVAV's signaling pathway and coupling tests showed that SIKVAV can interact with both receptors. Moreover, there is no indication of cytotoxicity, mutagenic or carcinogenic activity, skin or oral sensitivity. Our analysis suggests that SIKVAV has a high probability of interacting with peroxisome proliferator-activated receptor-gamma (NR-PPAR-γ), which has anti-inflammatory activity. The results of bioinformatics can help understand the participation of SIKVAV in homeostasis and influence the understanding of how this peptide can act as a biological asset in the control of dystrophies, neurodegenerative diseases, and tissue engineering.
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Affiliation(s)
- Livia Alves Filgueiras
- Laboratory of Innovation in Science and Technology - LACITEC, Department of Biophysics and Physiology, Federal University of Piauí, Teresina, Brazil
| | | | - Samuel Iwao Horita
- Laboratory of Innovation in Therapies, Education, and Bioproducts - LITEB, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
| | - Shubhangi D Shirsat
- Laboratory of Innovation in Therapies, Education, and Bioproducts - LITEB, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
| | - Varenyam Achal
- Environmental Engineering Program, Guangdong Technion - Israel Institute of Technology, Shantou, China
- Technion - Israel Institute of Technology, Haifa, Israel
| | - Mahendra Rai
- Department of Biotechnology, SGB Amravati University, Amravati, India
| | - Andrea Henriques-Pons
- Laboratory of Innovation in Therapies, Education, and Bioproducts - LITEB, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
| | - Anderson Nogueira Mendes
- Laboratory of Innovation in Science and Technology - LACITEC, Department of Biophysics and Physiology, Federal University of Piauí, Teresina, Brazil
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Johnson DJG, Jenkins ID, Huxley C, Coster MJ, Lum KY, White JM, Avery VM, Davis RA. Synthesis of New Triazolopyrazine Antimalarial Compounds. Molecules 2021; 26:molecules26092421. [PMID: 33919319 PMCID: PMC8122397 DOI: 10.3390/molecules26092421] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 04/15/2021] [Accepted: 04/15/2021] [Indexed: 11/29/2022] Open
Abstract
A radical approach to late-stage functionalization using photoredox and Diversinate™ chemistry on the Open Source Malaria (OSM) triazolopyrazine scaffold (Series 4) resulted in the synthesis of 12 new analogues, which were characterized by NMR, UV, and MS data analysis. The structures of four triazolopyrazines were confirmed by X-ray crystal structure analysis. Several minor and unexpected side products were generated during these studies, including two resulting from a possible disproportionation reaction. All compounds were tested for their ability to inhibit the growth of the malaria parasite Plasmodium falciparum (3D7 and Dd2 strains) and for cytotoxicity against a human embryonic kidney (HEK293) cell line. Moderate antimalarial activity was observed for some of the compounds, with IC50 values ranging from 0.3 to >20 µM; none of the compounds displayed any toxicity against HEK293 at 80 µM.
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Affiliation(s)
- Daniel J. G. Johnson
- Griffith Institute for Drug Discovery, School of Environment and Science, Griffith University, Brisbane, QLD 4111, Australia; (D.J.G.J.); (I.D.J.); (C.H.); (M.J.C.); (K.Y.L.); (V.M.A.)
| | - Ian D. Jenkins
- Griffith Institute for Drug Discovery, School of Environment and Science, Griffith University, Brisbane, QLD 4111, Australia; (D.J.G.J.); (I.D.J.); (C.H.); (M.J.C.); (K.Y.L.); (V.M.A.)
| | - Cohan Huxley
- Griffith Institute for Drug Discovery, School of Environment and Science, Griffith University, Brisbane, QLD 4111, Australia; (D.J.G.J.); (I.D.J.); (C.H.); (M.J.C.); (K.Y.L.); (V.M.A.)
| | - Mark J. Coster
- Griffith Institute for Drug Discovery, School of Environment and Science, Griffith University, Brisbane, QLD 4111, Australia; (D.J.G.J.); (I.D.J.); (C.H.); (M.J.C.); (K.Y.L.); (V.M.A.)
| | - Kah Yean Lum
- Griffith Institute for Drug Discovery, School of Environment and Science, Griffith University, Brisbane, QLD 4111, Australia; (D.J.G.J.); (I.D.J.); (C.H.); (M.J.C.); (K.Y.L.); (V.M.A.)
- NatureBank, Griffith University, Brisbane, QLD 4111, Australia
| | - Jonathan M. White
- School of Chemistry and Bio21 Institute, The University of Melbourne, Melbourne, VIC 3010, Australia;
| | - Vicky M. Avery
- Griffith Institute for Drug Discovery, School of Environment and Science, Griffith University, Brisbane, QLD 4111, Australia; (D.J.G.J.); (I.D.J.); (C.H.); (M.J.C.); (K.Y.L.); (V.M.A.)
- Discovery Biology, Griffith University, Brisbane, QLD 4111, Australia
| | - Rohan A. Davis
- Griffith Institute for Drug Discovery, School of Environment and Science, Griffith University, Brisbane, QLD 4111, Australia; (D.J.G.J.); (I.D.J.); (C.H.); (M.J.C.); (K.Y.L.); (V.M.A.)
- NatureBank, Griffith University, Brisbane, QLD 4111, Australia
- Correspondence: ; Tel.: +61-7-3735-6043
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Barth ER, Längle D, Wesseler F, Golz C, Krupp A, Schade D, Strohmann C. Higher Carbon Analogues of 1,4‐Dihydropyridines as Potent TGFβ/Smad Inhibitors. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201901223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Eva R. Barth
- Department of Inorganic Chemistry Faculty of Chemistry and Chemical Biology Dortmund University of Technology Otto‐Hahn‐Straße 6/6a 44227 Dortmund Germany
| | - Daniel Längle
- Department of Chemistry and Chemical Biology Faculty of Chemistry and Chemical Biology Technical University Dortmund Otto‐Hahn‐Str. 4 44227 Dortmund Germany
| | - Fabian Wesseler
- Department of Chemistry and Chemical Biology Faculty of Chemistry and Chemical Biology Technical University Dortmund Otto‐Hahn‐Str. 4 44227 Dortmund Germany
| | - Christopher Golz
- Department of Inorganic Chemistry Faculty of Chemistry and Chemical Biology Dortmund University of Technology Otto‐Hahn‐Straße 6/6a 44227 Dortmund Germany
| | - Anna Krupp
- Department of Inorganic Chemistry Faculty of Chemistry and Chemical Biology Dortmund University of Technology Otto‐Hahn‐Straße 6/6a 44227 Dortmund Germany
| | - Dennis Schade
- Department of Chemistry and Chemical Biology Faculty of Chemistry and Chemical Biology Technical University Dortmund Otto‐Hahn‐Str. 4 44227 Dortmund Germany
| | - Carsten Strohmann
- Department of Inorganic Chemistry Faculty of Chemistry and Chemical Biology Dortmund University of Technology Otto‐Hahn‐Straße 6/6a 44227 Dortmund Germany
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