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Vacek J, Zatloukalová M, Dorčák V, Cifra M, Futera Z, Ostatná V. Electrochemistry in sensing of molecular interactions of proteins and their behavior in an electric field. Mikrochim Acta 2023; 190:442. [PMID: 37847341 PMCID: PMC10582152 DOI: 10.1007/s00604-023-05999-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 09/12/2023] [Indexed: 10/18/2023]
Abstract
Electrochemical methods can be used not only for the sensitive analysis of proteins but also for deeper research into their structure, transport functions (transfer of electrons and protons), and sensing their interactions with soft and solid surfaces. Last but not least, electrochemical tools are useful for investigating the effect of an electric field on protein structure, the direct application of electrochemical methods for controlling protein function, or the micromanipulation of supramolecular protein structures. There are many experimental arrangements (modalities), from the classic configuration that works with an electrochemical cell to miniaturized electrochemical sensors and microchip platforms. The support of computational chemistry methods which appropriately complement the interpretation framework of experimental results is also important. This text describes recent directions in electrochemical methods for the determination of proteins and briefly summarizes available methodologies for the selective labeling of proteins using redox-active probes. Attention is also paid to the theoretical aspects of electron transport and the effect of an external electric field on the structure of selected proteins. Instead of providing a comprehensive overview, we aim to highlight areas of interest that have not been summarized recently, but, at the same time, represent current trends in the field.
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Affiliation(s)
- Jan Vacek
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, 77515, Olomouc, Czech Republic.
| | - Martina Zatloukalová
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, 77515, Olomouc, Czech Republic
| | - Vlastimil Dorčák
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, 77515, Olomouc, Czech Republic
| | - Michal Cifra
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Chaberska 1014/57, 18200, Prague, Czech Republic
| | - Zdeněk Futera
- Faculty of Science, University of South Bohemia, Branisovska 1760, 37005, Ceske Budejovice, Czech Republic
| | - Veronika Ostatná
- Institute of Biophysics, The Czech Academy of Sciences, v.v.i., Kralovopolska 135, 61200, Brno, Czech Republic
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2
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Parkula V, Berto M, Diacci C, Patrahau B, Di Lauro M, Kovtun A, Liscio A, Sensi M, Samorì P, Greco P, Bortolotti CA, Biscarini F. Harnessing Selectivity and Sensitivity in Electronic Biosensing: A Novel Lab-on-Chip Multigate Organic Transistor. Anal Chem 2020; 92:9330-9337. [PMID: 32483968 PMCID: PMC8007075 DOI: 10.1021/acs.analchem.0c01655] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Accepted: 06/02/2020] [Indexed: 01/02/2023]
Abstract
Electrolyte gated organic transistors can operate as powerful ultrasensitive biosensors, and efforts are currently devoted to devising strategies for reducing the contribution of hardly avoidable, nonspecific interactions to their response, to ultimately harness selectivity in the detection process. We report a novel lab-on-a-chip device integrating a multigate electrolyte gated organic field-effect transistor (EGOFET) with a 6.5 μL microfluidics set up capable to provide an assessment of both the response reproducibility, by enabling measurement in triplicate, and of the device selectivity through the presence of an internal reference electrode. As proof-of-concept, we demonstrate the efficient operation of our pentacene based EGOFET sensing platform through the quantification of tumor necrosis factor alpha with a detection limit as low as 3 pM. Sensing of inflammatory cytokines, which also include TNFα, is of the outmost importance for monitoring a large number of diseases. The multiplexable organic electronic lab-on-chip provides a statistically solid, reliable, and selective response on microliters sample volumes on the minutes time scale, thus matching the relevant key-performance indicators required in point-of-care diagnostics.
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Affiliation(s)
- Vitaliy Parkula
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
- Scriba
Nanotecnologie S.r.l., Via di Corticella 1838, 40128 Bologna, Italy
| | - Marcello Berto
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
| | - Chiara Diacci
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
- Laboratory
of Organic Electronics, Department of Science and Technology, Linköping University, 601 74 Norrköping, Sweden
| | - Bianca Patrahau
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
- University
of Strasbourg, CNRS, ISIS UMR 70068, Alleé Gaspard Monge, 67000 Strasbourg, France
| | - Michele Di Lauro
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
- Center
for Translational Neurophysiology of Speech and Communication, Istituto Italiano di Tecnologia, Via Fossato di Mortara 17-19, 44121 Ferrara, Italy
| | - Alessandro Kovtun
- Istituto
per la Sintesi Organica e la Fotoreattività, CNR, Via Piero Gobetti, 101, 40129 Bologna, Italy
| | - Andrea Liscio
- Istituto
per la Microelettronica e Microsistemi, CNR, Via del Fosso del
Cavaliere, 100, 00133 Roma, Italy
| | - Matteo Sensi
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
| | - Paolo Samorì
- University
of Strasbourg, CNRS, ISIS UMR 70068, Alleé Gaspard Monge, 67000 Strasbourg, France
| | - Pierpaolo Greco
- Scriba
Nanotecnologie S.r.l., Via di Corticella 1838, 40128 Bologna, Italy
| | - Carlo A. Bortolotti
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
| | - Fabio Biscarini
- Dipartimento
di Scienze della Vita, Università
degli Studi di Modena e Reggio Emilia, Via Campi 103, 41125 Modena, Italy
- Center
for Translational Neurophysiology of Speech and Communication, Istituto Italiano di Tecnologia, Via Fossato di Mortara 17-19, 44121 Ferrara, Italy
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de Souza TP, Abreu DS, Carepo MSP, Silva MAS, Zampieri D, Eberlin MN, Paulo TF, Sousa EHS, Longhinotti E, Diógenes ICN. Effect of Crotalus basiliscus snake venom on the redox reaction of myoglobin. J Biol Inorg Chem 2019; 24:171-178. [PMID: 30673877 DOI: 10.1007/s00775-019-01636-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Accepted: 01/11/2019] [Indexed: 11/30/2022]
Abstract
In this work, we have studied the effect of Crotalus basiliscus snake venom on the redox reaction of myoglobin (Mb), and by means of electrochemical techniques, we have shown that this reaction is undoubtedly affected following the interaction with the venom. Surface plasmon resonance, electrophoresis, UV-Vis, and circular dichroism showed that the interaction involves the attachment of some constituent of the venom to the protein, although not affecting its first and secondary structures. Mass spectra support this suggestion by showing the appearance of signals assigned to the Mb dimer and to a new species resulting from the interaction between Mb and the venom proteins. In addition, the mass spectra suggest the aromatic amino acids of myoglobin, mainly tryptophan and phenylalanine, are more exposed to the solvent medium upon the exposure to the venom solution. The results altogether indicate that the harmful effects of the venom of Crotalus basiliscus snake are likely connected to the blocking of the redox site of Mb.
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Affiliation(s)
- Ticyano P de Souza
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil
| | - Dieric S Abreu
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil.,Departamento de Física, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-970, Brazil
| | - Marta S P Carepo
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil.,LAQV, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal
| | - Maria A S Silva
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil
| | - Dávila Zampieri
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil.,ThoMSon Mass Spectrometry Laboratory, Institute of Chemistry, University of Campinas, Campinas, São Paulo, 13083-970, Brazil
| | - Marcos N Eberlin
- ThoMSon Mass Spectrometry Laboratory, Institute of Chemistry, University of Campinas, Campinas, São Paulo, 13083-970, Brazil
| | - Tércio F Paulo
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil
| | - Eduardo H S Sousa
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil
| | - Elisane Longhinotti
- Departamento de Química Analítica e Físico-Química, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil
| | - Izaura C N Diógenes
- Departamento de Química Orgânica e Inorgânica, Universidade Federal do Ceará, Fortaleza, Ceara, 60455-760, Brazil.
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Wang X, Roger M, Clément R, Lecomte S, Biaso F, Abriata LA, Mansuelle P, Mazurenko I, Giudici-Orticoni MT, Lojou E, Ilbert M. Electron transfer in an acidophilic bacterium: interaction between a diheme cytochrome and a cupredoxin. Chem Sci 2018; 9:4879-4891. [PMID: 29910941 PMCID: PMC5982212 DOI: 10.1039/c8sc01615a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 04/30/2018] [Indexed: 12/15/2022] Open
Abstract
Acidithiobacillus ferrooxidans, a chemolithoautotrophic Gram-negative bacterium, has a remarkable ability to obtain energy from ferrous iron oxidation at pH 2. Several metalloproteins have been described as being involved in this respiratory chain coupling iron oxidation with oxygen reduction. However, their properties and physiological functions remain largely unknown, preventing a clear understanding of the global mechanism. In this work, we focus on two metalloproteins of this respiratory pathway, a diheme cytochrome c4 (Cyt c4) and a green copper protein (AcoP) of unknown function. We first demonstrate the formation of a complex between these two purified proteins, which allows homogeneous intermolecular electron-transfer in solution. We then mimic the physiological interaction between the two partners by replacing one at a time with electrodes displaying different chemical functionalities. From the electrochemical behavior of individual proteins, we show that, while electron transfer on AcoP requires weak electrostatic interaction, electron transfer on Cyt c4 tolerates different charge and hydrophobicity conditions, suggesting a pivotal role of this protein in the metabolic chain. The electrochemical study of the proteins incubated together demonstrates an intermolecular electron transfer involving the protein complex, in which AcoP is reduced through the high potential heme of Cyt c4. Modelling of the electrochemical signals at different scan rates allows us to estimate the rate constant of this intermolecular electron transfer in the range of a few s-1. Possible routes for electron transfer in the acidophilic bacterium are deduced.
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Affiliation(s)
- X Wang
- Aix Marseille Univ , CNRS , IMM , BIP , UMR 7281 , 31 Chemin Aiguier , 13009 Marseille , France . ;
| | - M Roger
- School of Life Sciences , University of Dundee , Dundee , DD1 5EH , Scotland , UK
| | - R Clément
- Aix Marseille Univ , CNRS , IMM , BIP , UMR 7281 , 31 Chemin Aiguier , 13009 Marseille , France . ;
| | - S Lecomte
- Institute for Chemistry and Biology of Membrane and Nano-objects , Allée Geoffroy St Hilaire , 33600 Pessac , France
| | - F Biaso
- Aix Marseille Univ , CNRS , IMM , BIP , UMR 7281 , 31 Chemin Aiguier , 13009 Marseille , France . ;
| | - L A Abriata
- Laboratory for Biomolecular Modeling , École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics , AAB014, Station 19 , 1015 Lausanne , Switzerland
| | - P Mansuelle
- Aix Marseille Univ , CNRS , Institut de Microbiologie de la Méditerranée , FR 3479, Plate-forme Protéomique, Marseille Protéomique (MaP), B.P. 71 , 13402 Marseille Cedex 20 , France
| | - I Mazurenko
- School of Biomedical Sciences , Leeds , LS2 9JT , UK
| | - M T Giudici-Orticoni
- Aix Marseille Univ , CNRS , IMM , BIP , UMR 7281 , 31 Chemin Aiguier , 13009 Marseille , France . ;
| | - E Lojou
- Aix Marseille Univ , CNRS , IMM , BIP , UMR 7281 , 31 Chemin Aiguier , 13009 Marseille , France . ;
| | - M Ilbert
- Aix Marseille Univ , CNRS , IMM , BIP , UMR 7281 , 31 Chemin Aiguier , 13009 Marseille , France . ;
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Ahmadi S, Ebralidze II, She Z, Kraatz HB. Electrochemical studies of tau protein-iron interactions—Potential implications for Alzheimer’s Disease. Electrochim Acta 2017. [DOI: 10.1016/j.electacta.2017.03.175] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Operamolla A, Punzi A, Farinola GM. Synthetic Routes to Thiol-Functionalized Organic Semiconductors for Molecular and Organic Electronics. ASIAN J ORG CHEM 2016. [DOI: 10.1002/ajoc.201600460] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Alessandra Operamolla
- Dipartimento di Chimica; Università degli Studi di Bari Aldo Moro; Via Orabona 4 70126 Bari Italy
- CNR-ICCOM Istituto di Chimica dei Composti Organometallici; Via Orabona 4 70126 Bari Italy
| | - Angela Punzi
- Dipartimento di Chimica; Università degli Studi di Bari Aldo Moro; Via Orabona 4 70126 Bari Italy
| | - Gianluca M. Farinola
- Dipartimento di Chimica; Università degli Studi di Bari Aldo Moro; Via Orabona 4 70126 Bari Italy
- CNR-ICCOM Istituto di Chimica dei Composti Organometallici; Via Orabona 4 70126 Bari Italy
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