Dominance and succession of Microcystis genotypes and morphotypes in Lake Taihu, a large and shallow freshwater lake in China

Cyanobacterial Bloom Formation by Enhanced Ecological Adaptability and Competitive Advantage of Microcystis-Non-Negligible Role of Quorum Sensing

Microcystis-dominated cyanobacterial blooms (MCBs) frequently occur in freshwaters worldwide due to massive Microcystis colony formation and severely threaten human and ecosystem health. Quorum sensing (QS) is a direct cause of Microcystis colony formation that drives MCBs outbreak by regulating Microcystis population characteristics and behaviors. Many novel findings regarding the fundamental knowledge of the Microcystis QS phenomenon and the signaling molecules have been documented. However, little effort has been devoted to comprehensively summarizing and discussing the research progress and exploration directions of QS signaling molecules-mediated QS system in Microcystis. This review summarizes the action process of N-acyl homoserine lactones (AHLs) as major signaling molecules in Microcystis and discusses the detailed roles of AHL-mediated QS system in cellular morphology, physiological adaptability, and cell aggregation for colony formation to strengthen ecological adaptability and competitive advantage of Microcystis. The research progress on QS mechanisms in Microcystis are also summarized. Compared to other QS systems, the LuxI/LuxR-type QS system is more likely to be found in Microcystis. Also, we introduce quorum quenching (QQ), a QS-blocking process in Microcystis, to emphasize its potential as QS inhibitors in MCBs control. Finally, in response to the research deficiencies and gaps in Microcystis QS, we propose several future research directions in this field. This review deepens the understanding on Microcystis QS knowledge and provide theoretical guidance in developing strategies to monitor, control, and harness MCBs.

Duplex Real-Time Fluorescent Quantitative PCR Assays for the Detection of Toxigenic Microcystis Genotypes Based on SNP/InDel Variation in mcy Gene Cluster

In this study, the toxigenic characteristics of 14 strains of Microcystis were analyzed, and single nucleotide polymorphism (SNP) and insertion/deletion (InDel) loci in microcystin synthetase (mcy) gene clusters were screened. Based on SNP and InDel loci associated with the toxigenic characteristics, primers and TaqMan or Cycling fluorescent probes were designed to develop duplex real-time fluorescent quantitative PCR (FQ-PCR) assays. After evaluating specificity and sensitivity, these assays were applied to detect the toxigenic Microcystis genotypes in a shrimp pond where Microcystis blooms occurred. The results showed a total of 2155 SNP loci and 66 InDel loci were obtained, of which 12 SNP loci and 5 InDel loci were associated with the toxigenic characteristics. Three duplex real-time FQ-PCR assays were developed, each of which could quantify two genotypes of toxigenic Microcystis. These FQ-PCR assays were highly specific, and two Cycling assays were more sensitive than TaqMan assay. In the shrimp pond, six genotypes of toxigenic Microcystis were detected using the developed FQ-PCR assays, indicating that above genotyping assays have the potential for quantitative analysis of the toxigenic Microcystis genotypes in natural water.

Temporal characteristics and trends of nitrogen loadings in lake Taihu, China and its influencing mechanism at multiple timescales

Climate warming impact on excessive nitrogen (N) load in sediment favours cyanobacterial blooms in eutrophic waters. The nitrate (NO3--N) and ammonium (NH4+-N) are two forms of N loads that contribute to algae blooms. However, little attention is paid to the impact of environmental factors on N loads variations at different time scales. This paper used a well-calibrated and validated EFDC model to investigate the temporal patterns and trends of ammonium and nitrate from June 2016 to June 2017. This paper presented the relationship and effects between these variations and environmental factors using data from satellite and reanalysis-based observations obtained for six meteorological parameters. The relationship and effects between these variations and environmental factors were also examined at different timescales (i.e., daily, monthly and seasonal scales). Model calibration results indicated that measured values reasonably matched simulated values. The validation results revealed that relative error (RE) values were within an acceptable range. The REs of ammonium at East Taihu (S12) and Xu Lake (S23) sampling sites were 55.83% and 57.61%, while that of nitrate was 24.37% (S12) and 41.08%, respectively. The daily analysis of NH4+-N and NO3--N variations was 7.318 ± 3.876 (g/m2/day) and 0.0275 ± 0.222 (g/m2/day), respectively. The monthly analysis showed NH4+-N and NO3-N range from 2.04 to 12.04 (g/m2/day) and 0.0008 to 0.064 (g/m2/day), respectively. The magnitude NH4+-N and NO3--N varied and showed distinct inter-monthly variations. , The relationship between sediment fluxes and meteorological parameters showed the magnitude of correlation coefficient (r) and strength of correlation varied significantly. At daily scales, the relationship of NH4+-N and NO3--N had a significant positive correlation with all meteorological parameters. At monthly, the correlation coefficient (r) of NH4+-N and NO3-N were heterogenous. At daily and monthly scales, air temperature and wind speed are the main drivers affecting sediment N loads' dynamics; however, the influence of relative humidity, precipitation, and evaporation on N loads are smaller. The study demonstrates the contribution of meteorological conditions to the magnitude and timing of N loadings variability in water bodies. The findings provide more insight into lake ecosystem protection and environmental remediation.

Growth and photosynthesis responses of microcystin (MC)- and non-MC-producing Microcystis strains during co-culture with the submerged macrophyte Myriophyllum spicatum

The growth and photosynthetic responses of microcystin (MC)- and non-MC-producing Microcystis to the submerged macrophyte Myriophyllum spicatum were investigated under plant-Microcystis co-culture conditions (PMC + , PMC-), in comparison with their corresponding mono-culture controls (SMC + , SMC-). The OJIP chlorophyll a fluorescence transient was recorded and analyzed using JIP-test parameters. In comparison with the corresponding mono-culture controls, the quantum efficiencies of the electron transport chain expressed as parameters Ψ_o and φEo decreased by more than 25% in the PMC- group, much higher than those in the PMC+ group (p < 0.05). The decreasing extent of the electron transport flux ratio ETo/RC was significantly larger in the PMC- group than in the PMC+ group (p < 0.05). The performance index (PI_ABS) decreased by 26.98% in the PMC- group and by 16.25% in the PMC+ group. These results indicated that the non-MC-producing Microcystis was more sensitive than the MC-producing strain when co-cultured with M. spicatum, and the efficiency and energy flux of electron transport might be the main targets of Photosystem II. Future research should focus on the intraspecific composition and toxigenic levels of Microcystis populations interacting with submerged macrophytes to guide the use of submerged vegetation restoration.

Occurrence and driving forces of different nitrogen forms in the sediments of the grass and algae-type zones of Taihu Lake

Excessive nitrogen (N) load in sediments is at risk of release resulting in the degradation of grass-type lake ecosystems. At present, the occurrence characteristics of N forms and the driving forces of organic N (ON) hydrolysis in the sediments of Taihu Lake were still unclear. Here, 52 sampling sites in 7 lake areas in Taihu Lake were investigated to compare the spatial occurrence characteristics of the sedimentary free N (FN), exchangeable N (EN), acid hydrolyzable N (HN), and residual N (RN) and their associated driving forces. The results showed that the total N contents in the dry sediment ranged from 1811.56 to 5594.06 mg kg^-1, and the contribution was in the order of RN > HN > EN > FN. Spatially, RN and total organic carbon were significantly consistently influenced by dam construction and deposition algal residue. The HN concentration was high in the estuaries affected by N inputs from the rivers. The coupling relationship of spatial distribution between ON and N forms was revealed. The factors, i.e., algal residue deposition and terrigenous N inputs, were considered as the main driving forces stimulating the ON hydrolysis in the algae-type lake zones. It can be deduced that controlling terrigenous N inputs and sediment suspension may be the key to inhibiting the transformation from grass-type to algae-type lake ecosystem.

New insights into eutrophication management: Importance of temperature and water residence time

Eutrophication and harmful cyanobacterial blooms threaten water resources all over the world. There is a great controversy about controlling only phosphorus or controlling both nitrogen and phosphorus in the management of lake eutrophication. The primary argument against the dual nutrients control of eutrophication is that nitrogen fixation can compensate the nitrogen deficits. Thus, it is of great necessary to study the factors that can significantly affect the nitrogen fixation. Due to the difference of climate and human influence, the water quality of different lakes (such as water temperature, N:P ratio and water residence time) is also quite different. Numerous studies have reported that the low N:P ratio can intensify the nitrogen fixation capacities. However, the effects of temperature and water residence time on the nitrogen fixation remain unclear. Thus, 30 shallows freshwater lakes in the eastern plain of China were selected to measure dissolved N₂ and Ar concentrations through N₂: Ar method using a membrane inlet mass spectrometer to quantify the nitrogen fixation capacities and investigate whether the temperature and water residence time have a great impact on nitrogen fixation. The results have shown that the short lake water residence time can severely inhibit the nitrogen fixation capacities through inhibiting the growth of nitrogen-fixing cyanobacteria, changing the N:P ratio and resuspending the solids from sediments. Similarly, lakes with low water temperature also have a low nitrogen fixation capacity, suggesting that controlling nitrogen in such lakes is feasible if the growth of cyanobacteria is limited by nitrogen.

Rising temperature more strongly promotes low-abundance Paramecium to remove Microcystis and degrade microcystins

Driven by global warming and eutrophication, Microcystis blooms have posed a severe threat to freshwater ecosystems, especially their derived pollutants cause serious harm to aquatic organisms, thus it is urgent to develop an effective strategy to eliminate nuisance Microcystis. Some protozoa can efficiently graze on toxic Microcystis aeruginosa and degrade cyanotoxins, and play a vital role in regulating harmful cyanobacteria. In the process of protozoa feeding on harmful algae, both temperature and protozoa population density are critical factors that affect the consequences of harmful M. aeruginosa population dynamics. In this study, we first found that Paramecium multimicronucleatum has strong ability to feed on M. aeruginosa, and then studied the interactive effects between temperature and initial density of P. multimicronucleatum on controlling M. aeruginosa. Results showed that increasing temperature accelerated the elimination of M. aeruginosa by P. multimicronucleatum, e.g. the time for M. aeruginosa elimination at 32 °C was shortened to 3.5-4 days. The higher temperatures (26, 29, and 32 °C) were more conducive to improve the efficiency of controlling M. aeruginosa by P. multimicronucleatum with low initial density (10 inds mL^-1). Furthermore, P. multimicronucleatum can rapidly degrade microcystins, and the degradation ratio approximately 100% at 32 °C after 6 days. This is the first study to discover that P. multimicronucleatum can high efficiently graze on M. aeruginosa and has a much higher grazing rate (3.5-5.5 × 10⁴Microcystis Paramecium^-1 d^-1) than other protozoa. These findings contribute to the establishment of a new feasible method for the biological control of M. aeruginosa, and provide a theoretical guidance for the practical application of P. multimicronucleatum in the removal of M. aeruginosa.

Cyanobacterial blooms in China: diversity, distribution, and cyanotoxins

Cyanobacterial blooms, which refer to the massive growth of harmful cyanobacteria, have altered the global freshwater ecosystems during the past decades. China has the largest population in the world, and it is suffering from the harmful effect of water eutrophication and cyanobacterial blooms along with rapid development of the economy and society. Research on cyanobacterial blooms and cyanotoxins in China have been overwhelmingly enhanced and emphasized during the past decades. In the present review, the research on cyanobacterial blooms in China is generally introduced, including the history of cyanobacterial bloom studies, the diversity of the bloom-forming cyanobacteria species (BFCS), and cyanotoxin studies in China. Most studies have focused on Microcystis, its blooms, and microcystins. Newly emerging blooms with the dominance of non-Microcystis BFCS have been gradually expanding to wide regions in China. Understanding the basic features of these non-Microcystis BFCS and their blooms, including their diversity, occurrence, physio-ecology, and harmful metabolites, will provide direction on future studies of cyanobacterial blooms in China.

The involvement of α-proteobacteria Phenylobacterium in maintaining the dominance of toxic Microcystis blooms in Lake Taihu, China

Lake Taihu in China has suffered serious harmful cyanobacterial blooms for decades. The algal blooms threaten the ecological sustainability, drinking water safety, and human health. Although the roles of abiotic factors (such as water temperature and nutrient loading) in promoting Microcystis blooms have been well studied, the importance of biotic factors (e.g. bacterial community) in promoting and meditating Microcystis blooms remains unclear. In this study, we investigated the ecological dynamics of bacterial community, the ratio of toxic Microcystis, as well as microcystin in Lake Taihu. High-throughput 16S rRNA sequencing and principal component analysis (PCA) revealed that the bacteria community compositions (BCCs) clustered into three groups, the partitioning of which corresponded to that of groups according to the toxic profiles (the ratio of toxic Microcystis to total Microcystis, and the microcystin concentrations) of the samples. Further Spearman's correlation network showed that the α-proteobacteria Phenylobacterium strongly positively correlated with the toxic profiles. Subsequent laboratory chemostats experiments demonstrated that three Phenylobacterium strains promoted the dominance of the toxic Microcystis aeruginosa PCC7806 when co-culturing with the non-toxic PCC7806 mcyB^- mutant. Taken together, our data suggested that the α-proteobacteria Phenylobacterium may play a vital role in the maintenance of toxic Microcystis dominance in Lake Taihu.

Revealing Cryptic Changes of Cyanobacterial Community Structure in Two Eutrophic Lakes Using eDNA Sequencing

Harmful cyanobacterial blooms pose a risk to human health worldwide. To enhance understanding on the bloom-forming mechanism, the spatiotemporal changes in cyanobacterial diversity and composition in two eutrophic lakes (Erhai Lake and Lushui Reservoir) of China were investigated from 2010 to 2011 by high-throughput sequencing of environmental DNA. For each sample, 118 to 260 cpcBA-IGS operational taxonomic units (OTUs) were obtained. Fifty-two abundant OTUs were identified, which made up 95.2% of the total sequences and were clustered into nine cyanobacterial groups. Although the cyanobacterial communities of both lakes were mainly dominated by Microcystis, Erhai Lake had a higher cyanobacterial diversity. The abundance of mixed Nostocales species was lower than that of Microcystis, whereas Phormidium and Synechococcus were opportunistically dominant. The correlation between the occurrence frequency and relative abundance of OTUs was poorly fitted by the Sloan neutral model. Deterministic processes such as phosphorus availability were shown to have significant effects on the cyanobacterial community structure in Erhai Lake. In summary, the Microcystis-dominated cyanobacterial community was mainly affected by the deterministic process. Opportunistically dominant species have the potential to replace Microcystis and form blooms in eutrophic lakes, indicating the necessity to monitor these species for drinking water safety.

Enhanced resistance of co-existing toxigenic and non-toxigenic Microcystis aeruginosa to pyrogallol compared with monostrains

Cyanobacteria species are sensitive to many plant allelochemicals, such as pyrogallol. However, little attention has been paid to the relative effects of these xenobiotics on co-occurring toxigenic and non-toxigenic cyanobacterial strains, despite their co-existence in blooms. Hence, the responses of one toxigenic (TS2) and two non-toxigenic (NS1, NS2) Microcystis aeruginosa strains to pyrogallol were tested under three conditions: mono-culture and co-cultured either directly or separately by dialysis membrane. The study showed that the inhibitory effects of pyrogallol on the growth and photosynthetic yield (Fv/Fm) of either toxigenic or non-toxigenic M. aeruginosa strains were lower in direct and dialysis co-culture conditions than those in mono-culture conditions. This result indicated that chemical-mediated reciprocal effects occur between the co-existing toxigenic and non-toxigenic strains. The toxigenic M. aeruginosa strain was more sensitive to pyrogallol than the non-toxigenic strains in both mono- and co-culture systems, though whether this outcome is due to the former's toxigenic status is unclear. Intracellular microcystin-LR (MC-LR) concentrations of the toxigenic strain decreased after pyrogallol addition in both mono- and co-culture systems, whereas extracellular MC-LR concentrations increased. This finding may reflect the cell damage of M. aeruginosa because of the pyrogallol. At the same initial number of cells, the extracellular MC-LR concentration released from the same amount of TS2 cells in mono-culture was slightly higher than that in dialysis co-culture conditions. Overall, this study shows that plant allelochemicals may have the potential to reduce bloom toxicity by reducing the proportion of toxigenic cyanobacterial strains, and the effects of co-existing strains must be considered when assessing the effects of plant allelochemicals on target strains.

Characterization of Microcystis morphotypes: Implications for colony formation and intraspecific variation

Groundworks on Microcystis colony formation and morphological variation are critical to understanding the whole eco-cycle of Microcystis blooms. In this study, we tested the cell adhesion effect, an important pathway for colony formation, among Microcystis colonies of different morphotypes, and examined the potential linkage between cell properties and morphological plasticity. Results showed that cell adhesion significantly contributed to the aggregation of Microcystis colonies, but such adhesion only occurred in colonies belonging to the same morphotype. This suggests that Microcystis cannot form large colonies through a direct adhesion effect among different morphotypes, possibly due to substantial differences in the chemical structures and compositions of their extracellular polymeric substances (EPS). Cell functional features also varied substantially with morphotypes, implying high intraspecific variation in competitive and defensive strategies of Microcystis. Our results offer new insights into colony formation of Microcystis and substantiate the importance of fundamental chemical characteristics of EPS in determining the morphological plasticity.

Microcystins distribution, bioaccumulation, and Microcystis genotype succession in a fish culture pond

In freshwater aquaculture ponds, cyanobacterial blooms and microcystins (MCs) pollution have attracted considerable attention due to their toxic effects. To provide an insight into cyanobacterial problems in aquaculture ponds, MCs distribution, bioaccumulation, and Microcystis genotype succession in a fishpond were investigated from May 2017 to November 2017. The distribution of MCs in filtered water, seston, and sediment varied considerably among months. MCs concentrations in filtered water, seston, and sediment ranged from 1.16 to 3.66 μg/L, 0.64 to 13.98 μg/g DW, and 1.34 to 5.90 μg/g DW, respectively. In addition, chemical oxygen demand was positively correlated with sestonic MCs concentrations. MCs concentrations accumulated in different tissues of market-size fish were in the order of liver > kidney > intestine > muscle. MCs content in muscle was 4.3 times higher than the WHO recommended tolerable daily intake level. Twenty-four ITS genotypes of Microcystis were identified from a total of 653 sequences. During the survey period, considerable genotype variation and rapid genotype succession were observed and dominant genotype was absent. A redundancy analysis revealed that Microcystis genotypes could significantly influence the variations in the proportions of the potentially toxic Microcystis, which could in turn influence the MCs concentrations in seston.

Spatiotemporal dynamics of cell abundance, colony size and intracellular toxin concentrations of pelagic and benthic Microcystis in Lake Caohai, China

Lake Caohai has experienced extensive Microcystis blooms in recent years, and to improve its water quality, the local government carried out a series of water control measures. To better understand the dynamics of both pelagic and benthic Microcystis and their characteristics in Lake Caohai, we conducted a 1-year investigation from December 2015 to December 2016 to gain a seasonal outlook on the distribution and dynamics of cell abundance, colony size and intracellular microcystins (MCs) of Microcystis. The results indicated that the Microcystis bloom occupied primarily the northeastern region and then moved gradually from lakeshore to lake center. The perennial southwesterly winds and the water inflow from northeast to southwest in Lake Caohai determined the spatiotemporal distribution of pelagic Microcystis. Benthic Microcystis was mainly distributed in the northeastern region in summer, occupied the lake center in autumn and then occupied the southeastern region in winter, determined by the sedimentation of pelagic Microcystis and the death of benthic Microcystis. Small colonies (20-60 μm) overwintered more easily in both water column and sediment. The concentrations of intracellular toxin of benthic Microcystis were observed to be significantly higher than those of pelagic Microcystis. This might be because Microcystis synthesized large amount of MCs to acclimate to an unfavorable benthic environment. This knowledge on the dynamics of Microcystis expands our understanding of mechanisms underpinning the formation of Microcystis blooms.

Cyanobacterial bloom mitigation by sanguinarine and its effects on aquatic microbial community structure

Sanguinarine has strong inhibitory effects against the cyanobacterium Microcystis aeruginosa. However, previous studies were mainly limited to laboratory tests. The efficacy of sanguinarine for mitigation of cyanobacterial blooms under field conditions, and its effects on aquatic microbial community structure remain unknown. To elucidate these issues, we carried out in situ cyanobacterial bloom mitigation tests. Our results showed that sanguinarine decreased population densities of the harmful cyanobacteria Microcystis and Anabaena. The inhibitory effects of sanguinarine on these cyanobacteria lasted 17 days, after which the harmful cyanobacteria recovered and again became the dominant species. Concentrations of microcystins in the sanguinarine treatments were lower than those of the untreated control except during the early stage of the field test. The results of community DNA pyrosequencing showed that sanguinarine decreased the relative abundance of the prokaryotic microorganisms Cyanobacteria, Actinobacteria, Planctomycetes and eukaryotic microorganisms of Cryptophyta, but increased the abundance of the prokaryotic phylum Proteobacteria and eukaryotic microorganisms within Ciliophora and Choanozoa. The shifting of prokaryotic microbial community in water column was directly related to the toxicity of sanguinarine, whereas eukaryotic microbial community structure was influenced by factors other than direct toxicity. Harmful cyanobacteria mitigation efficacy and microbial ecological effects of sanguinarine presented in this study will inform the broad application of sanguinarine in cyanobacteria mitigation.

Global Metabolomic Characterizations of Microcystis spp. Highlights Clonal Diversity in Natural Bloom-Forming Populations and Expands Metabolite Structural Diversity

Cyanobacteria are photosynthetic prokaryotes capable of synthesizing a large variety of secondary metabolites that exhibit significant bioactivity or toxicity. Microcystis constitutes one of the most common cyanobacterial genera, forming the intensive blooms that nowadays arise in freshwater ecosystems worldwide. Species in this genus can produce numerous cyanotoxins (i.e., toxic cyanobacterial metabolites), which can be harmful to human health and aquatic organisms. To better understand variations in cyanotoxin production between clones of Microcystis species, we investigated the diversity of 24 strains isolated from the same blooms or from different populations in various geographical areas. Strains were compared by genotyping with 16S-ITS fragment sequencing and metabolite chemotyping using LC ESI-qTOF mass spectrometry. While genotyping can help to discriminate among different species, the global metabolome analysis revealed clearly discriminating molecular profiles among strains. These profiles could be clustered primarily according to their global metabolite content, then according to their genotype, and finally according to their sampling location. A global molecular network of all metabolites produced by Microcystis species highlights the production of a wide set of chemically diverse metabolites, including a few microcystins, many aeruginosins, microginins, cyanopeptolins, and anabaenopeptins, together with a large set of unknown molecules. These components, which constitute the molecular biodiversity of Microcystis species, still need to be investigated in terms of their structure and potential bioactivites (e.g., toxicity).

Dominance and Growth Factors of Pseudanabaena sp. in Drinking Water Source Reservoirs, Southern China

Pseudanabaena sp. is a common and harmful species in freshwater cyanobacteria blooms. There are very few studies on its distribution characteristics and growth influencing factors. In the current study, it was found to be dominant in three cascading reservoirs in Southern China. Field observations and laboratory experiments were integrated to investigate the dominance and growth factors of Pseudanabaena sp. The effects of temperature, light intensity, nutrients, chemical oxygen demand (COD), pH, and disturbance on Pseudanabaena sp. growth were evaluated. The results indicated that Pseudanabaena sp. had significant positive correlations with water temperature, pH, and COD (p < 0.01) and a positive correlation with NH3-N (p < 0.05). The optimum growth temperature range for Pseudanabaena sp. was from 20 to 30 °C; hence, it usually has outbreaks in May and August. The optimum light intensity and pH for Pseudanabaena sp. were 27 μmol photons m−2s−1 and from 7 to 9, respectively. The superior tolerance for low light, disturbance, and phosphorus deficiency of Pseudanabaena sp. may be the main factors affecting its dominance in reservoirs. Controlling nitrogen was more effective than controlling phosphorus to avoid the risk that was brought by Pseudanabaena sp. This study contributed to the theoretical knowledge for the prediction and control of the growth of Pseudanabaena sp.

Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation Sequencing

Microcystis is one of the most common and dominant bloom-forming cyanobacteria in freshwater worldwide. The method for genotype detection based on traditional molecular cloning is expensive and time consuming and generates a limited number of sequences. In this study, a high-throughput sequencing (HTS) method was developed to detect the internal transcribed spacer (ITS) regions between 16S and 23S rRNA region of Microcystis populations along a typical water system in Yuqiao Reservoir-Haihe River in Tianjin, northern China. A total of 629,341 reads were obtained and clustered into 2005 operational taxonomic units (OTUs). Analysis of alpha diversity indices showed that the Haihe River is more diverse than Yuqiao Reservoir. In general, the two water areas exhibit a clear differentiation pattern in OTU abundance, sharing genotypes from a small part of Yuqiao Reservoir with those in the Haihe River. Phylogenetic analysis further indicated the possible flexible evolution of Microcystis genotypes occurring in the research areas. This study provides the first exhaustive description of HTS method for detection of ITS region to evaluate Microcystis intra-species diversity and relationship.

Metatranscriptomics analysis of cyanobacterial aggregates during cyanobacterial bloom period in Lake Taihu, China

Molecular mechanism of interaction between the bloom-forming cyanobacterial species and attached microbios within cyanobacterial aggregates has not been elucidated yet and understanding of which would help to unravel the cyanobacteria bloom-forming mechanism. In this study, we profiled the metabolically active community by high-throughput metatranscriptome sequencing from cyanobacterial aggregates during cyanobacterial bloom period in Lake Taihu, China. A total of 308 million sequences were obtained using the HiSeq 2500 sequencing platform, which provided a great sequence coverage to carry out the in-depth taxonomic classification, functional classification, and metabolic pathway analysis of the cyanobacterial aggregates. The results show that bacteria dominated in cyanobacterial aggregates, accounting for more than 96.66% of total sequences. Microcystis was the most abundant genus, accounted for 26.80% of total assigned sequences at the genus level in cyanobacterial aggregates community; however, Proteobacteria (46.20%) was found to be as the most abundant active bacterial populations at the phylum level. More importantly, nitrogen, phosphonate, and phosphinate metabolism which associated with eutrophication were found in this study. Especially, the enzymes and organisms relating to denitrification and anammox of nitrogen metabolism, which reduced nitrogen concentration by reducing nitrate to nitrogen to inhibit the eutrophication, were first discovered in Lake Taihu during cyanobacterial bloom period. The present study provides a snapshot of metatranscriptome for cyanobacterial aggregates in Lake Taihu and demonstrates that cyanobacterial aggregates could play a key role in the nitrogen cycle in eutrophic water.

Sources, distribution and export coefficient of phosphorus in lowland polders of Lake Taihu Basin, China

Identifying phosphorus (P) sources, distribution and export from lowland polders is important for P pollution management, however, is challenging due to the high complexity of hydrological and P transport processes in lowland areas. In this study, the spatial pattern and temporal dynamics of P export coefficient (PEC) from all the 2539 polders in Lake Taihu Basin, China were estimated using a coupled P model for describing P dynamics in a polder system. The estimated amount of P export from polders in Lake Taihu Basin during 2013 was 1916.2 t/yr, with a spatially-averaged PEC of 1.8 kg/ha/yr. PEC had peak values (more than 4.0 kg/ha/yr) in the polders near/within the large cities, and was high during the rice-cropping season. Sensitivity analysis based on the coupled P model revealed that the sensitive factors controlling the PEC varied spatially and changed through time. Precipitation and air temperature were the most sensitive factors controlling PEC. Culvert controlling and fertilization were sensitive factors controlling PEC during some periods. This study demonstrated an estimation of PEC from 2539 polders in Lake Taihu Basin, and an identification of sensitive environmental factors affecting PEC. The investigation of polder P export in a watershed scale is helpful for water managers to learn the distribution of P sources, to identify key P sources, and thus to achieve best management practice in controlling P export from lowland areas.

Targeted deep sequencing reveals high diversity and variable dominance of bloom-forming cyanobacteria in eutrophic lakes

Cyanobacterial blooms in eutrophic lakes are severe environmental problems worldwide. To characterize the spatiotemporal heterogeneity of cyanobacterial blooms, a high-throughput method is necessary for the specific detection of cyanobacteria. In this study, the cyanobacterial composition of three eutrophic waters in China (Taihu Lake, Dongqian Lake, and Dongzhen Reservoir) was determined by pyrosequencing the cpcBA intergenic spacer (cpcBA-IGS) of cyanobacteria. A total of 2585 OTUs were obtained from the normalized cpcBA-IGS sequence dataset at a distance of 0.05. The 238 most abundant OTUs contained 92% of the total sequences and were classified into six cyanobacterial groups. The water samples of Taihu Lake were dominated by Microcystis, mixed Nostocales species, Synechococcus, and unclassified cyanobacteria. Besides, all the samples from Taihu Lake were clustered together in the dendrogram based on shared abundant OTUs. The cyanobacterial diversity in Dongqian Lake was dramatically decreased after sediment dredging and Synechococcus became exclusively dominant in this lake. The genus Synechococcus was also dominant in the surface water of Dongzhen Reservoir, while phylogenetically diverse cyanobacteria coexisted at a depth of 10m in this reservoir. In summary, targeted deep sequencing based on cpcBA-IGS revealed a large diversity of bloom-forming cyanobacteria in eutrophic lakes and spatiotemporal changes in the composition of cyanobacterial communities. The genus Microcystis was the most abundant bloom-forming cyanobacteria in eutrophic lakes, while Synechococcus could be exclusively dominant under appropriate environmental conditions.