Gene cloning, expression, and reducing property enhancement of nitrous oxide reductase from Alcaligenes denitrificans strain TB

Gene cloning, expression and performance validation of nitric oxide dismutase

Nitrous oxide (N2O) is a significant contributor to global warming and possesses an ozone-depleting impact nearly 298 times that of CO2. To reduce N2O emissions, the newly-discovered nod gene which can directly convert NO into N2 and O2 was successfully cloned from the anaerobic denitrification sludge. The recombinant plasmid containing the nod gene was built, and the expression of nod gene in Escherichia coli was determined, leading to the construction of recombinant engineering bacteria. Results showed that the recombinant engineering bacteria E. coli BL21 (DE3)-pET28a-nod could autonomously degrade NO, with a degradation rate of 72 % within 48 h, and could produce 2479.72 ppm of N2 and 75.12 mL of O2. The cumulative O2 production of the sludge sample and recombinant E. coli within 8 h was 1.75 mL and 8.45 mL, respectively. The cumulative O2 production of recombinant E. coli was at least 4.82 times higher than that of the sludge sample. The investigation proposed a new biodegradation pathway for nitrogen pollution.

Spatio-temporal efficiency of fiscal environmental expenditure in reducing CO2 emissions in China's cities

Although market-based CO₂ emission control measures (e.g., carbon tax and carbon trading market) have been deeply discussed, government-based measures have received limited attention. This has led to increased uncertainty regarding the formulation of targeted emission reduction policies. Using a unique dataset, the non-radial directional distance function, a proposed spatial meta-frontier analysis method, and the log t convergence model, this study comprehensively investigates the spatio-temporal trends in fiscal environmental expenditure efficiency (FE) and corresponding causes for in a case study for 106 Chinese cities over 2007-2019. The results show that city-level FE presented a slow upward trend at a relatively low level, with a clearly skewed distribution. The technology gap effect between city groups and the overall best production technology, and the efficiency gap effect within city groups were the main drivers widening the overall FE gap. Convergence analysis indicated that three convergence clubs of FE were found, which were distributed across the country. This study highlights that, when constructing fiscal environmental expenditure policies, the government should focus on balancing the regional gap of FE while comprehensively improving FE.

Inoculation effect of Pseudomonas sp. TF716 on N2O emissions during rhizoremediation of diesel-contaminated soil

The demand for rhizoremediation technology that can minimize greenhouse gas emissions while effectively removing pollutants in order to mitigate climate change has increased. The inoculation effect of N₂O-reducing Pseudomonas sp. TF716 on N₂O emissions and on remediation performance during the rhizoremediation of diesel-contaminated soil planted with tall fescue (Festuca arundinacea) or maize (Zea mays) was investigated. Pseudomonas sp. TF716 was isolated from the rhizosphere soil of tall fescue. The maximum N₂O reduction rate of TF716 was 18.9 mmol N₂O g dry cells⁻¹ h⁻¹, which is superior to the rates for previously reported Pseudomonas spp. When Pseudomonas sp. TF716 was added to diesel-contaminated soil planted with tall fescue, the soil N₂O-reduction potential was 2.88 times higher than that of soil with no inoculation during the initial period (0–19 d), and 1.08–1.13 times higher thereafter. However, there was no enhancement in the N₂O-reduction potential for the soil planted with maize following inoculation with strain TF716. In addition, TF716 inoculation did not significantly affect diesel degradation during rhizoremediation, suggesting that the activity of those microorganisms involved in diesel degradation was unaffected by TF716 treatment. Analysis of the dynamics of the bacterial genera associated with N₂O reduction showed that Pseudomonas had the highest relative abundance during the rhizoremediation of diesel-contaminated soil planted with tall fescue and treated with strain TF716. Overall, these results suggest that N₂O emissions during the rhizoremediation of diesel-contaminated soil using tall fescue can be reduced with the addition of Pseudomonas sp. TF716.

Nitrite removal by Acinetobacter sp.TX: a candidate of curbing N2O emission

The nitrite removal pathway in Acinetobacter sp. TX5 was explored through the key gene identification and the corresponding enzyme purification, after which the capability to reduce nitrite by immobilized beads was investigated in a fixed-bed reactor. Results revealed that a nosZ gene encoding nitrous oxide reductase (N₂OR) exists in TX5 cells, and a N₂OR responsible for the reduction of N₂O to N₂ was purified successfully with a molecular weight of 70.05 kDa, a purification fold of 16.30 and a recovery rate of 5.17%. For TX5 immobilization, the optimal values of polyvinyl alcohol (PVA), spent mushroom substrate (SMS) and Aci (TX5) obtained by response surface methodology (RSM) were 6.32%, 2.92% and 4.57%, respectively. In a fixed-bed reactor packed with immobilized TX5, the removal efficiency (RE) achieved 90% (at 50 h) for NO2--N and 85% (at 96 h) for total nitrogen (TN). On the basis of these results, a nitrite removal pathway in TX5 was proposed. Overall, Acinetobacter sp. TX5 might be a promising candidate for nitrite removal with an ability to suppress N₂O accumulation.

Enzymatic hydrolysis of lignocellulosic biomass using a novel, thermotolerant recombinant xylosidase enzyme from Clostridium clariflavum: a potential addition for biofuel industry

The present study describes the cloning, expression, purification and characterization of the xylosidase gene (1650 bp) from a thermophilic bacterium Clostridium clariflavum into E. coli BL21 (DE3) using the expression vector pET-21a(+) for utilization in biofuel production. The recombinant xylosidase enzyme was purified to homogeneity by heat treatment and immobilized metal ion affinity chromatography. SDS-PAGE determined that the molecular weight of purified xylosidase was 60 kDa. This purified recombinant xylosidase showed its maximum activity at a temperature of 37 °C and pH 6.0. The purified recombinant xylosidase enzyme remains stable up to 90 °C for 4 h and retained 54.6% relative activity as compared to the control. The presence of metal ions such as Ca²⁺ and Mg²⁺ showed a positive impact on xylosidase enzyme activity whereas Cu²⁺ and Hg²⁺ inhibit its activity. Organic solvents did not considerably affect the stability of the purified xylosidase enzyme while DMSO and SDS cause the inhibition of enzyme activity. Pretreatment experiments were run in triplicate for 72 h at 30 °C using 10% NaOH. Saccharification experiment was performed by using 1% substrate (pretreated plant biomass) in citrate phosphate buffer of pH 6.5 loaded with 150 U mL⁻¹ of purified recombinant xylosidase enzyme along with ampicillin (10  μg mL⁻¹). Subsequent incubation was carried out at 50 °C and 100 rpm in a shaking incubator for 24 h. Saccharification potential of the recombinant xylosidase enzyme was calculated against both pretreated and untreated sugarcane bagasse and wheat straw as 9.63% and 8.91% respectively. All these characteristics of the recombinant thermotolerant xylosidase enzyme recommended it as a potential candidate for biofuel industry.

The present study describes the cloning, expression, purification and characterization of a xylosidase gene from Clostridium clariflavum into E. coli BL21 (DE3) using the expression vector pET-21a(+) for utilization in biofuel production.

NosZ gene cloning, reduction performance and structure of Pseudomonas citronellolis WXP-4 nitrous oxide reductase

Nitrous oxide reductase (N₂OR) is the only known enzyme that can reduce the powerful greenhouse gas nitrous oxide (N₂O) to harmless nitrogen at the final step of bacterial denitrification. To alleviate the N₂O emission, emerging approaches aim at microbiome biotechnology. In this study, the genome sequence of facultative anaerobic bacteria Pseudomonas citronellolis WXP-4, which efficiently degrades N₂O, was obtained by de novo sequencing for the first time, and then, four key reductase structure coding genes related to complete denitrification were identified. The single structural encoding gene nosZ with a length of 1914 bp from strain WXP-4 was cloned in Escherichia coli BL21(DE3), and the N₂OR protein (76 kDa) was relatively highly efficiently expressed under the optimal inducing conditions of 1.0 mM IPTG, 5 h, and 30 °C. Denitrification experiment results confirmed that recombinant E. coli had strong denitrification ability and reduced 10 mg L⁻¹ of N₂O to N₂ within 15 h under the optimal conditions of pH 7.0 and 40 °C, its corresponding N₂O reduction rate was almost 2.3 times that of Alcaligenes denitrificans strain TB, but only 80% of that of wild strain WXP-4, meaning that nos gene cluster auxiliary gene deletion decreased the activity of N₂OR. The 3D structure of N₂OR predicted on the basis of sequence homology found that electron transfer center CuA had only five amino acid ligands, and the S2 of the catalytically active center CuZ only bound one Cu_I atom. The unique 3D structure was different from previous reports and may be closely related to the strong N₂O reduction ability of strain WXP-4 and recombinant E. coli. The findings show a potential application of recombinant E. coli in alleviating the greenhouse effect and provide a new perspective for researching the relationship between structure and function of N₂OR.

Nitrous oxide reductase (N₂OR) is the only known enzyme that can reduce the powerful greenhouse gas nitrous oxide (N₂O) to harmless nitrogen at the final step of bacterial denitrification. The recombinant E. coli and wild strain WXP-4 demonstrate strong N₂O reduction ability.

Exploring the feasibility of nitrous oxide reduction and polyhydroxyalkanoates production simultaneously by mixed microbial cultures

Nitrous oxide (N₂O), as a powerful greenhouse gas, has drawn increasing attention in recent years and different strategies for N₂O reduction were explored. In this study, a novel strategy for valuable polyhydroxyalkanoates (PHA) production coupling with N₂O reduction by mixed microbial cultures (MMC) using different substrates was evaluated. Results revealed that N₂O was an effective electron acceptor for PHA production. The highest PHA yield (0.35 Cmmol PHA/Cmmol S) and PHA synthesis rate (227.47 mg PHA/L/h) were obtained with acetic acid as substrate. Low temperature (15℃) and pH of 8.0 were beneficial for PHA accumulation. Results of the thermogravimetric analysis showed that PHA produced with N₂O as electron acceptor has better thermal stability (melting temperature of 99.4℃ and loss 5% weight temperature of 211.4℃). Our work opens up new avenues for simultaneously N₂O reduction and valuable bioplastic production, which is conducive to resource recovery and climate protection.

Research on the Efficiency of China’s Fiscal Expenditure Structure under the Goal of Inclusive Green Growth

Inclusive Green Growth is a sustainable development mode that pays attention to the coordinated growth of the economy, society, and ecology. With the intensification of the contradiction between fiscal revenue and expenditure, adopting the goal of adjusting the fiscal expenditure structure is conducive to improving the efficiency of fiscal funds. This paper establishes a theoretical model of the efficiency of the fiscal expenditure structure under the goal of Inclusive Green Growth, and on this basis, it constructs an index system of Inclusive Green Growth. Then, it applies a DEA-Malmquist model to analyze the efficiency of the fiscal expenditure structure. The results show that from 2007 to 2018, the growth rate of Inclusive Green Growth index showed a downward trend, which was mainly due to the decline in the growth rate of economic development. It rebounded after 2016, and the growth of the inclusiveness level played a major role. In time and space, the development resources tend to the unbalanced development trend of the eastern region; the average total factor productivity of the fiscal expenditure structure in space is the lowest in the east. The fiscal expenditure should be inclined to social expenditure and green expenditure, the western region should be inclined to economic expenditure, and the allocation of the expenditure structure in the central region should imitate the high-efficiency areas. In order to achieve the comprehensive development goal, this paper provides an analytical idea for the adjustment of the fiscal expenditure structure.

Cloning Method for Stress-Resistant Gene of Conringia planisiliqua under Drought Stress

The low temperature, drought, high salt, and other environments influence crop production and development directly, so the gene cloning method has become an effective biological means. In order to effectively improve the cloning effect, a gene cloning method for Conringia planisiliqua based on mRNA differential display technology was proposed. Based on mRNA differential display technology, the gene of Conringia planisiliqua was transcribed. The present study expects gene cloning to be better than the traditional method. This will lay the basis for gene cloning and functional verification of the transcription and disease-resistant proteins in Conringia planisiliqua. According to homologous identification results, the homologous drought-resistant genes were determined and screened. The data of Conringia planisiliqua in the existing biological database were used to extract ESTs data of Conringia planisiliqua. Then, the heating environment was established and the concept of integral function was introduced to express the influence of growth environment of different genomes. The mass, momentum, energy, and turbulent flow situation of stress-resistant gene of Conringia planisiliqua during the growth were satisfied. Finally, the data search was carried out in the NCBI database and gene cloning was achieved by ESTs data sequence. Experimental results show that the proposed method can effectively reduce the gene data fitting and improve the quantity of gene fragments cloned in a cycle, so the overall cloning effect is better.

Isolation, purification, gene cloning and expression of antifungal protein from Bacillus amyloliquefaciens MG-3

The antifungal protein MG-3A was isolated from Bacillus amyloliquefaciens MG-3, and was purified and identified. The results showed that antifungal protein MG-3A was likely a serine protease with a molecular weight of ~48 kDa. The serine protease exhibited a broad antifungal spectrum and effectively extended the shelf-life of loquat fruit up to 25 d. The antifungal protein MG-3A showed good stabilities to temperature, pH and protease K. Primers were designed according to the mass spectrum of antifungal protein and the comparison with proteins in the NCBI database. The serine protease gene MG-3A from B. amyloliquefaciens genome was isolated and cloned using PCR. The prokaryotic expression plasmid pET28a-MG-3A was constructed and used to express the antimicrobial protein in vitro. The SDS-PAGE results showed that the recombinant protein expressed in Escherichia coli BL21 (DE3) was highly soluble. Affinity chromatography was used to purify the recombinant protein and its antifungal activity was evaluated.

Heterologous expression and functional study of nitric oxide reductase catalytic reduction peptide from Achromobacter denitrificans strain TB

Biological denitrification is a promising and green technology for air pollution control. To investigate the nitric oxide reductase (NOR) that dominates NO reduction efficiency in biological purification, the heterologous prokaryotic expression system of the norB gene, which encodes the core peptide of the catalytic reduction structure in the NOR from Achromobacter denitrificans strain TB, was constructed in Escherichia coli BL21 (DE3). Results showed that the 1218 bp-long norB gene was expressed at the highest level under 1.0 mM IPTG for 5 h at 30 °C, and the relative expression abundance of norB in recombinant E. coli was increased by 16.6 times compared with that of the wild-type TB. However, the NO reduction efficiency and NOR activity of strain TB was 2.7 and 1.83 times higher than those of recombinant E. coli, respectively. On the basis of genomic reassembly and protein structure modeling, the core peptide of the NOR catalytic reduction structure from Achromobacter sp. TB can independently exert NO reduction. The low NO degradation efficiency of recombinant E. coli may be due to the lack of a NorC-like structure that increases the enzyme activity of the NorB protein. The results of this study can be used as basis for further research on the structure and function of NOR.

Research on the competitive effect of local government's environmental expenditure in China

Local government's environmental expenditure (LGEE) is critical to ecological protection and environmental governance, and it has not played its due role. By constructing a theoretical model of the competitive effect of LGEE under the intervention of central government, this study used the spatial econometric model to analyze the competitive effect of LGEE based on the data of 30 provinces in China from 2007 to 2016. The main results show that (1) from the perspective of the national area, LGEE shows a U-shaped development model together with economic growth; (2) a significant positive spatial effect in interprovincial LGEE is observed in eastern region, indicating that local government tends to adopt the competitive strategy of mutual imitation. Local government will not reduce environmental expenditure as fiscal decentralization increases; (3) the coefficient of the spatial effect in LGEE is significantly negative in central and western regions, which is manifested as a competitive strategy of mutual substitution. The coefficient of fiscal decentralization is significantly negative, indicating that LGEE relies mainly on the transfer payments from central government, and the essence of interprovincial competition regarding environmental expenditure is the competition for the transfer payments from central government.

Simultaneous removal of SO2 and NO by FeII(EDTA) solution: promotion of Mn powder and mechanism of reduction

The effect of Mn powder addition on the simultaneous removal of SO₂ and NO coupled with Fe^II(EDTA) absorption was investigated in this work. In the NO absorption system with Fe^II(EDTA), SO₂ reduced Fe^II(EDTA)-NO to Fe^II(EDTA) with a reduction efficiency reaching 88.5% under the conditions of 4000 mg/m³ SO₂, pH 8.0, 44 °C, and the flow rate of 1.2 L/min within 60 min. Introducing 0.1 M Mn powder with SO₂ increased the Fe^II(EDTA)-NO reduction efficiency to 96.8% within 5 min. SO₂ was also removed by reducing Fe^II(EDTA)-NO and converted into SO₄^2- at a removal efficiency of 100%. After adding Mn powder, NO was removed through the following reaction: [Formula: see text]. Mn powder functioned as a reductant to regenerate the absorption of solution, and the coordinated NO in Fe^II(EDTA)-NO was reduced to NH₄⁺. The resource utilization rate of N reached approximately 77.2%. The integrated technology is a potential solution for flue gas treatment in industrial sectors with coal-fired power plants and industrial boiler. Graphical abstract.

Simultaneous removal of elemental mercury and NO by mercury induced thermophilic community in membrane biofilm reactor

Thermophilic membrane biofilm reactor (TMBR) for elemental mercury (Hg⁰) and NO removal in simulated flue gas was investigated at oxygen content of 6% and 60 °C. The performance, the microbial community structures, gene function and the mechanism for Hg⁰ and NO removal in the TMBR were evaluated. TMBR achieved effective simultaneous Hg⁰ and NO removal in 210 days of operation, Hg⁰ and NO removal efficiency were up to 88.9% and 85.3%, respectively. Mercury induced thermophilic community had been formed significantly. Comamonas, Pseudomonas, Desulfomicrobium, Burkholderia and Halomonas were thermophilic mercury resistant bacteria. Brucella, Paracoccus, Tepidiphilus, Proteobacteria, Pseudomonas and Symbiobacterium were nitrifying/denitrifying genera, and had functional genes of mercury and nitrogen metabolism, as shown by16S rDNA and metagenomic sequencing. The biofilm in TMBR was characterized by XPS, HPLC. XPS and HPLC spectra indicate the formation of a mercuric species (Hg²⁺) from mercury oxidation. TMBR used oxygen as electron acceptor, NO and Hg⁰ as electron donor in nitrification; O₂, NO and NO₃^- could be used as electron acceptor and Hg⁰ as electron donor in denitrification.

Optimization, purification, and characterization of hydroxylamine oxidoreductase from Acinetobacter sp. Y1

Hydroxylamine oxidoreductase (HAO) is a key enzyme involved in ammonium removal pathway. To further study the enzyme, HAO was purified from heterotrophic nitrifier Acinetobacter sp. Y1 and its property was investigated. Results of single-factor experiments showed that the optimal carbon source, nitrogen source, and C/N ratio were trisodium citrate, ammonium sulfate, and 14, respectively, with incubation time of 16 H. DEAE Sefinose^TM FF anion-exchange chromatography was used to purify HAO, followed by Sefinose^TM CL-6B gel filtration chromatography. SDS-PAGE revealed that a 47 kDa enzyme was purified successfully, with a purification fold of 7.32 and a recovery rate of 19.40%. The optimized enzyme activity of purified HAO was tested at pH 8.0 and 30 °C. The results showed that the activity was increased by 43.78% and 25.64% in the presence of 1 mM Fe²⁺ and Fe³⁺ , respectively. HAO activity was increased with the increase of Na⁺ and K⁺ , Mn²⁺ , Zn²⁺ , Cu²⁺ , Ca²⁺ , Ba²⁺ inhibited the HAO activity at three concentrations. In addition, HAO activity was activated by ethylenediaminetetraacetic acid at 0.4 mM, and a negative effect arose as the dose increased. The purified enzyme from Y1 is different from other reported HAOs. Further study should be conducted to investigate the enzyme.