Speciation of antimony in representative sulfidic hot springs in the YST Geothermal Province (China) and its immobilization by spring sediments

Metagenome-assembled genomes reveal carbohydrate degradation and element metabolism of microorganisms inhabiting Tengchong hot springs, China

A hot spring is a distinctive aquatic environment that provides an excellent system to investigate microorganisms and their function in elemental cycling processes. Previous studies of terrestrial hot springs have been mostly focused on the microbial community, one special phylum or category, or genes involved in a particular metabolic step, while little is known about the overall functional metabolic profiles of microorganisms inhabiting the terrestrial hot springs. Here, we analyzed the microbial community structure and their functional genes based on metagenomic sequencing of six selected hot springs with different temperature and pH conditions. We sequenced a total of 11 samples from six hot springs and constructed 162 metagenome-assembled genomes (MAGs) with completeness above 70% and contamination lower than 10%. Crenarchaeota, Euryarchaeota and Aquificae were found to be the dominant phyla. Functional annotation revealed that bacteria encode versatile carbohydrate-active enzymes (CAZYmes) for the degradation of complex polysaccharides, while archaea tend to assimilate C1 compounds through carbon fixation. Under nitrogen-deficient conditions, there were correspondingly fewer genes involved in nitrogen metabolism, while abundant and diverse set of genes participating in sulfur metabolism, particularly those associated with sulfide oxidation and thiosulfate disproportionation. In summary, archaea and bacteria residing in the hot springs display distinct carbon metabolism fate, while sharing the common energy preference through sulfur metabolism. Overall, this research contributes to a better comprehension of biogeochemistry of terrestrial hot springs.

XANES/EXAFS and quantum chemical study of the speciation of arsenic in the condensate formed in landfill gas processing: Evidence of the dominance of As-S species

The XANES/EXAFS data and quantum chemical simulations presented in this study demonstrate several features of the chemistry of arsenic compounds found in the condensates and solids generated in landfill gas (LFG) processing carried out for renewable natural gas (RNG) production. The XANES data show the decrease in the position of the absorption edge of As atoms, similar to that characteristic for sulfur-containing As solutes and solids. The EXAFS data show that the As-O and As-S distances in these matrixes are similar to those in thioarsenates. Quantum-chemical calculations demonstrated the close agreement between the experimental and modeled As-S and As-O distances determined for a range of methylated and thiolated arsenic solutes. These calculations also showed that the increase of the number of the As-S bonds in the coordination shell of arsenic is accompanied by a consistent decrease of the charges of As atoms. This decrease is correlated with the number of the As-S bonds, in agreement with the trend observed in the XANES data. These results provide insight into the intrinsic chemistry and reactivity of As species present in LFG matrixes; they may be helpful for the development of treatment methods to control arsenic in these systems.

Different sulfide to arsenic ratios driving arsenic speciation and microbial community interactions in two alkaline hot springs

Arsenic (As) is ubiquitous in geothermal fluids, which threatens both water supply safety and local ecology. The co-occurrence of sulfur (S) and As increases the complexity of As migration and transformation in hot springs. Microorganisms play important roles in As-S transformation processes. In the present study, two Tibetan alkaline hot springs (designated Gulu [GL] and Daba [DB]) with different total As concentrations (0.88 mg/L and 12.42 mg/L, respectively) and different sulfide/As ratios (3.97 and 0.008, respectively) were selected for investigating interactions between As-S geochemistry and microbial communities along the outflow channels. The results showed that As-S transformation processes were similar, although concentrations and percentages of As and S species differed between the two hot springs. Thioarsenates were detected at the vents of the hot springs (18% and 0.32%, respectively), and were desulfurized to arsenite along the drainage channel. Arsenite was finally oxidized to arsenate (532 μg/L and 12,700 μg/L, respectively). Monothioarsenate, total As, and sulfate were the key factors shaping the changes in microbial communities with geochemical gradients. The relative abundances of sulfur reduction genes (dsrAB) and arsenate reduction genes (arsC) were higher in upstream portions of GL explaining high thiolation. Arsenite oxidation genes (aoxAB) were relatively abundant in downstream parts of GL and at the vent of DB explaining low thiolation. Sulfur oxidation genes (soxABXYZ) were abundant in GL and DB. Putative sulfate-reducing bacteria (SRB), such as Desulfuromusa and Clostridium, might be involved in forming thioarsenates by producing reduced S for chemical reactions with arsenite. Sulfur-oxidizing bacteria (SOB), such as Elioraea, Pseudoxanthomonas and Pseudomonas, and arsenite-oxidizing bacteria (AsOB) such as Thermus, Sulfurihydrogenibium and Hydrogenophaga, may be responsible for the oxidation of As-bound S, thereby desulfurizing thioarsenates, forming arsenite and, by further abiotic or microbial oxidation, arsenate. This study improves our understanding of As and S biogeochemistry in hot springs.

Thiolation of trimethylantimony: Identification and structural characterization

Antimony (Sb), a re-emerging contaminant, has received increasing attentions. The toxicity and mobility of Sb depend on its species. However, little knowledge was available about its multiple chemical species in the environment. Here, we identified and characterized a previously unknown Sb species, trimethylmonothioantimony (TMMTSb). TMMTSb was readily formed when trimethylantimony (TMSb) reacted with sulfide. TMMTSb was separated using HPLC-ICP-MS and further identified by Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), and the results show the existence of [SbSC₃H₁₀]⁺, [SbSC₃H₉Na]⁺, and [SbSC₃H₉K]⁺. The formation of Sb-S bond in TMMTSb was evidenced by the Raman shift at 419 cm^-1 compared with that in TMSb. Conclusively, the molecular formula was verified as SbS(CH₃)₃. Sb L_III-edge X-ray absorption near edge structure (XANES) spectrum revealed a higher intensity of the pre-edge peak at 4137 eV of TMMTSb than that of TMSb. The formation of TMMTSb was observed when the microbiota enriched from hot spring sediments and paddy soil were incubated with TMSb. Sulfate-reducing bacteria may be involved in the formation of TMMTSb. The finding of this thiolated methylantimony species may pave a new avenue for exploring the fate of Sb in the environment.

New Mobilization Pathway of Antimonite: Thiolation and Oxidation by Dissimilatory Metal-Reducing Bacteria via Elemental Sulfur Respiration

Antimony (Sb) mobilization is widely explored with dissimilatory metal-reducing bacteria (DMRB) via microbial iron(III)-reduction. Here, our study found a previously unknown pathway whereby DMRB release adsorbed antimonite (Sb^III-O) from goethite via elemental sulfur (S⁰) respiratory reduction under mild alkaline conditions. We incubated Sb^III-O-loaded goethite with Shewanella oneidensis MR-1 in the presence of S⁰ at pH 8.5. The incubation results showed that MR-1 reduced S⁰ instead of goethite, and biogenic sulfide induced the formation of thioantimonite (Sb^III-S). Sb^III-S was then oxidized by S⁰ to mobile thioantimonate (Sb^V-S), resulting in over fourfold greater Sb release to water compared with the abiotic control. Sb^IV-S was identified as the intermediate during the oxidation process by Fourier transform ion cyclotron resonance mass spectrometry and electron spin resonance analysis. The existence of Sb^IV-S reveals that the oxidation of Sb^III-S to Sb^V-S follows a two-step consecutive one-electron transfer from Sb to S atoms. Sb^V-S then links with Sb^III-S by sharing S atoms and inhibits Sb^III-S polymerization and Sb^III₂S₃ precipitation like a "capping agent". This study clarifies the thiolation and oxidation pathway of Sb^III-O to Sb^V-S by S⁰ respiration and expands the role of DMRB in the fate of Sb.

Antimony contamination and its risk management in complex environmental settings: A review

Antimony (Sb) is introduced into soils, sediments, and aquatic environments from various sources such as weathering of sulfide ores, leaching of mining wastes, and anthropogenic activities. High Sb concentrations are toxic to ecosystems and potentially to public health via the accumulation in food chain. Although Sb is poisonous and carcinogenic to humans, the exact mechanisms causing toxicity still remain unclear. Most studies concerning the remediation of soils and aquatic environments contaminated with Sb have evaluated various amendments that reduce Sb bioavailability and toxicity. However, there is no comprehensive review on the biogeochemistry and transformation of Sb related to its remediation. Therefore, the present review summarizes: (1) the sources of Sb and its geochemical distribution and speciation in soils and aquatic environments, (2) the biogeochemical processes that govern Sb mobilization, bioavailability, toxicity in soils and aquatic environments, and possible threats to human and ecosystem health, and (3) the approaches used to remediate Sb-contaminated soils and water and mitigate potential environmental and health risks. Knowledge gaps and future research needs also are discussed. The review presents up-to-date knowledge about the fate of Sb in soils and aquatic environments and contributes to an important insight into the environmental hazards of Sb. The findings from the review should help to develop innovative and appropriate technologies for controlling Sb bioavailability and toxicity and sustainably managing Sb-polluted soils and water, subsequently minimizing its environmental and human health risks.

Environmental geochemistry of thioantimony: formation, structure and transformation as compared with thioarsenic

Antimony (Sb), a redox-sensitive toxic element, has received global attention due to the increased awareness of its rich geochemistry. The past two decades have witnessed the explosive development in geochemistry of oxyanionic Sb(OH)₃ and Sb(OH)₆^-. Emerging thioantimony species (Sb-S) have recently been detected, which actually dominate the Sb mobility in sulfate-reducing environments. However, the instability and complexity of Sb-S present the most pressing challenges. To overcome these barriers, it is urgent to summarize the existing research on the environmental geochemistry of Sb-S. Since Sb-S is an analogous species to thioarsenic (As-S), a comparison between Sb-S and As-S will provide insightful information. Therefore, this review presents a way of comparing environmental geochemistry between Sb-S and As-S. Here, we summarize the formation and transformation of Sb-S and As-S, their chemical structures and analytical methods. Then, the challenges and perspectives are discussed. Finally, the important scientific questions that need to be addressed are also proposed.

Preparation of environmental samples for chemical speciation of metal/metalloids: A review of extraction techniques

Chemical speciation is a relevant topic in environmental chemistry since the (eco)toxicity, bio (geo)chemical cycles, and mobility of a given element depend on its chemical forms (oxidation state, organic ligands, etc.). Maintaining the chemical stability of the species and avoiding equilibrium disruptions during the sample treatment is one of the biggest challenges in chemical speciation, especially in environmental matrices where the level of concomitants/interferents is normally high. To achieve this task, strategies based on chemical properties of the species can be carried out and pre-concentration techniques are often needed due to the low concentration ranges of many species (μg L^-1 - ng L^-1). Due to the significance of the topic and the lack of reviews dealing with sample preparation of metal (loid)s (usually, sample preparation reviews focus on the total metal content), this work is presented. This review gives an up-to-date overview of the most common sample preparation techniques for environmental samples (water, soil, and sediments), with a focus on speciation of metal/metalloids and determination by spectrometric techniques. Description of the methods is given, and the most recent applications (last 10 years) are presented.

Influence of Al(III) and Sb(V) on the transformation of ferrihydrite nanoparticles: Interaction among ferrihydrite, coprecipitated Al(III) and Sb(V)

Ferrihydrite is ubiquitous in natural environments and is usually co-precipitated with impure ions and toxic contaminants like Al(III) and Sb(V) during the neutralization process of acid mine drainage. However, little is known about the dynamic interactions among ferrihydrite, Al(III) and Sb(V). In this study, the influence of coprecipitated Al(III) and Sb(V) on the transformation of ferrihydrite was investigated. The samples were characterized by X-ray diffraction (XRD), Raman spectroscopy, Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy and transmission electron microscopy before and after aging for 10 days at 70 °C. Results indicated that the Al(III) enhanced the immobilization of Sb(V) under neutral and alkaline conditions, and the presence of Sb(V) induced more production of extractable Al(III). XRD patterns revealed that the transformation rate of coprecipitated Al(III) and Sb(V) ferrihydrite was higher than Al-coprecipitated ferrihydrite. It is speculated that the presence of Sb(V) weakened the inhibition of Al(III) under experimental conditions. Competitive reaction of Al(III) and Sb(V) for substitution on the lattice Fe of ferrihydrite, likely decreased Al(III) substitution on ferrihydrite, and thus increased the observed transformation rate of ferrihydrite. These results have significant environmental implications for predicting the role of impurities and contaminants on ferrihydrite transformation processes.