Rare-earth metal oxide nanoparticles decouple the linkage between soil bacterial community structure and function by selectively influencing potential keystone taxa

Key bacterial taxa with specific metabolisms and life history strategies sustain soil microbial network stability exposed to carbendazim and deoxynivalenol

Co-contamination of carbendazim (CBD) and deoxynivalenol (DON) is common in agricultural soils, yet their ecological impact on soil microbiome remains poorly assessed. Here, we investigated the influence of CBD and DON on the structure, function, and co-occurrence networks of soil microbiome. The combined treatment of CBD and DON significantly exacerbated the negative impacts on soil microbial diversity, functional diversity, and microbial network stability compared to individual treatments. Specifically, Lysobacter, Gemmatimonas, Nitrospira, Massilia, and Bacillus were identified as indicator species for CBD and DON. Simultaneously, the abundance of genes involved in key ecological functions, such as nitrification (amoA) and organic phosphorus mineralization (phoAD), was significantly reduced. Notably, key bacterial taxa Nitrospira and Gemmatimonas, with K-life history strategy and capabilities for nitrification and organic nitrogen mineralization, played crucial roles in promoting positive interactions in networks. Furthermore, variance partitioning analysis (VPA) and structural equation modeling (SEM) demonstrated that the abundance and niche breadth of key bacterial taxa were the primary drivers of microbial network stability. In conclusion, our study provides new insights into how soil microbiomes and networks respond to pesticides and mycotoxins, aiding in a more comprehensive assessment of exposure risks.

The roles of rare and abundant microbial species in the primary succession of biological soil crusts are differentiated in metal tailings ponds with different states

Tailings ponds formed by long-term accumulation of mineral processing waste have become a global environmental problem. Even worse, tailings ponds are often simply abandoned or landfilled after they cease to be used. This allows pollution to persist and continue to spread in the environment. The significance of primary succession mediated by biological soil crusts for tailings pond remediation has been illustrated by previous studies. However, the process of primary succession may not be the same at different stages during the lifetime of tailings ponds. Therefore, we investigated the environmental differences and the successional characteristics of microbial communities in the primary successional stage of tailings ponds at three different states. The results showed that the primary succession process positively changed the environment of tailings ponds in any state of tailings ponds. The primary successional stage determined the environmental quality more than the state of the tailings pond. In the recently abandoned tailings ponds, abundant species were more subjected to heavy metal stress, while rare species were mainly limited by nutrient content. We found that as the succession progressed, rare species gradually acquired their own community space and became more responsive to environmental stresses. Rare species played an important role in microbial keystone species groups.

Molecular insights into rare earth element (REE)-mediated phytotoxicity and its impact on human health

Rare earth elements (REEs) that include 15 lanthanides, scandium, and yttrium are a special class of elements due to their remarkable qualities such as magnetism, corrosion resistance, luminescence, and electroconductivity. Over the last few decades, the implication of REEs in agriculture has increased substantially, which was driven by rare earth element (REE)-based fertilizers to increase crop growth and yield. REEs regulate different physiological processes by modulating the cellular Ca2+ level, chlorophyll activities, and photosynthetic rate, promote the protective role of cell membranes, and increase the plant's ability to withstand various stresses and other environmental factors. However, the use of REEs in agriculture is not always beneficial because REEs regulate plant growth and development in dose-dependent manner and excessive usage of them negatively affects plants and agricultural yield. Moreover, increasing applications of REEs together with technological advancement is also a rising concern as they adversely impact all living organisms and disturb different ecosystems. Several animals, plants, microbes, and aquatic and terrestrial organisms are subject to acute and long-term ecotoxicological impacts of various REEs. This concise overview of REEs' phytotoxic effects and implications on human health offers a context for continuing to sew fabric scraps to this incomplete quilt's many layers and colors. This review deals with the applications of REEs in different fields, specifically agriculture, the molecular basis of REE-mediated phytotoxicity, and the consequences for human health.

Nano-Nd2O3 reduced soil bacterial community function by altering the relative abundance of rare and sensitive taxa

Nanoparticulate-Nd₂O₃ (nano-Nd₂O₃) has been excessively utilized in agriculture, industry, and medicine. Hence, nano-Nd₂O₃ can have environmental implications. However, the impact of nano-Nd₂O₃ on alpha diversity, composition, and function of soil bacterial communities has not been thoroughly evaluated. We amended soil to achieve different concentrations of nano-Nd₂O₃ (0, 10, 50, and 100 mg kg^-1 soil) and incubated the mesocosms for 60 days. On days 7 and 60 of the experiment, we measured the effect of nano-Nd₂O₃ on alpha diversity and composition of soil bacterial community. Further, the effect of nano-Nd₂O₃ on the function of soil bacterial community was assessed based on changes in the activities of the six potential enzymes that mediate the cycling of nutrients in the soil. Nano-Nd₂O₃ did not alter the alpha diversity and composition of the soil bacterial community; however, it negatively affected community function in a dose-dependent manner. Specifically, the activities of β-1,4-glucosidase and β-1,4-n-acetylglucosaminidase that mediate soil carbon and nitrogen cycling, respectively, were significantly affected on days 7 and 60 of the exposure. The effect of nano-Nd₂O₃ on the soil enzymes correlated with changes in relative abundances of the rare and sensitive taxa, viz., Isosphaerales, Isosphaeraceae, Ktedonobacteraceae, and Streptomyces. Overall, we provide information for the safe implementation of technological applications that use nano-Nd₂O₃.

Metagenomics reveals the increased antibiotics resistome through prokaryote rather than virome after overuse of rare earth element compounds

Rare earth elements (REE) are extensively exploited in the agricultural ecosystems due to their various beneficial roles on plant growth. However, the ecotoxicological effects and environmental risk of REE are poorly assessed. Here, we investigated the effects of lanthanum and cerium nitrate on soil prokaryote and viral metal resistance genes (MRGs) and antibiotics resistance genes (ARGs) using a metagenomic-based approach. We found that relative abundances of prokaryote phyla Bacteroidetes and Chloroflexi decreased with increasing of both REE compounds. In addition, low level REE nitrate (0.05 and 0.1 mmol kg^-1 soil) inhibited the viral family Phycodanaviridae, Rudiviridae, Schitoviridae, whereas high level (0.16 and 0.32 mmol kg^-1 soil) REE nitrate suppressed the viral family Herelleviridae, Iridoviridae, Podoviridae. ARGs were not significantly affected by low level of REE nitrate. However, high level of both REEs nitrate increased the abundances of dominant prokaryote genes resisting to most of the drug classes, such as aminoglycoside, elfamycin, fluoroquinolone, macrolide, rifamycin. Abundance of MRGs in prokaryote did not change consistently with REE nitrate compound type and input rate. MRGs were only partially detected in the virome in some of the treatments, while ARGs was not detected in virome. Together, we demonstrated that overuse of REE nitrate in agriculture would increase the risk of dissemination of ARGs through prokaryotes but not virus, although viral community was substantially shifted.

Effect of CeO2 nanoparticles on plant growth and soil microcosm in a soil-plant interactive system

The impact of CeO₂ nanoparticles (NPs) on plant physiology and soil microcosm and the underlying mechanism remains unclear to date. This study investigates the effect of CeO₂ NPs on plant growth and soil microbial communities in both the rhizosphere of cucumber seedlings and the surrounding bulk soil, with CeCl₃ as a comparison to identify the contribution of the particulate and ionic form to the phytotoxicity of CeO₂ NPs. The results show that Ce was significantly accumulated in the cucumber tissue after CeO₂ NPs exposure. In the roots, 5.3% of the accumulated Ce has transformed to Ce³⁺. This transformation might take place prior to uptake by the roots since 2.5% of CeO₂ NPs was found transformed in the rhizosphere soil. However, the transformation of CeO₂ NPs in the bulk soil was negligible, indicating the critical role of rhizosphere chemistry in the transformation. CeO₂ NPs treatment induced oxidative stress in the roots, but the biomass of the roots was significantly increased, although the Vitamin C (Vc) content and soluble sugar content were decreased and mineral nutrient contents were altered. The soil enzymatic activity and the microbial community in both rhizosphere and bulk soil samples were altered, with rhizosphere soil showing more prominent changes. CeCl₃ treatment induced similar effects although less than CeO₂ NPs, suggesting that Ce³⁺ released from CeO₂ NPs contributed to the CeO₂ NPs induced impacts on soil health and plant physiology.