1
|
Dreyer A, Masanta WO, Lugert R, Bohne W, Groß U, Leha A, Dakna M, Lenz C, Zautner AE. Proteome profiling of Campylobacter jejuni 81-176 at 37 °C and 42 °C by label-free mass spectrometry. BMC Microbiol 2024; 24:191. [PMID: 38822261 PMCID: PMC11140963 DOI: 10.1186/s12866-024-03348-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Accepted: 05/22/2024] [Indexed: 06/02/2024] Open
Abstract
BACKGROUND The main natural reservoir for Campylobacter jejuni is the avian intestinal tract. There, C. jejuni multiplies optimally at 42 °C - the avian body temperature. After infecting humans through oral intake, the bacterium encounters the lower temperature of 37 °C in the human intestinal tract. Proteome profiling by label-free mass spectrometry (DIA-MS) was performed to examine the processes which enable C. jejuni 81-176 to thrive at 37 °C in comparison to 42 °C. In total, four states were compared with each other: incubation for 12 h at 37 °C, for 24 h at 37 °C, for 12 h at 42 °C and 24 h at 42 °C. RESULTS It was shown that the proteomic changes not only according to the different incubation temperature but also to the length of the incubation period were evident when comparing 37 °C and 42 °C as well as 12 h and 24 h of incubation. Altogether, the expression of 957 proteins was quantifiable. 37.1 - 47.3% of the proteins analyzed showed significant differential regulation, with at least a 1.5-fold change in either direction (i.e. log2 FC ≥ 0.585 or log2 FC ≤ -0.585) and an FDR-adjusted p-value of less than 0.05. The significantly differentially expressed proteins could be arranged in 4 different clusters and 16 functional categories. CONCLUSIONS The C. jejuni proteome at 42 °C is better adapted to high replication rates than that at 37 °C, which was in particular indicated by the up-regulation of proteins belonging to the functional categories "replication" (e.g. Obg, ParABS, and NapL), "DNA synthesis and repair factors" (e.g. DNA-polymerase III, DnaB, and DnaE), "lipid and carbohydrate biosynthesis" (e.g. capsular biosynthesis sugar kinase, PrsA, AccA, and AccP) and "vitamin synthesis, metabolism, cofactor biosynthesis" (e.g. MobB, BioA, and ThiE). The relative up-regulation of proteins with chaperone function (GroL, DnaK, ClpB, HslU, GroS, DnaJ, DnaJ-1, and NapD) at 37 °C in comparison to 42 °C after 12 h incubation indicates a temporary lower-temperature proteomic response. Additionally the up-regulation of factors for DNA uptake (ComEA and RecA) at 37 °C compared to 42 °C indicate a higher competence for the acquisition of extraneous DNA at human body temperature.
Collapse
Affiliation(s)
- Annika Dreyer
- Institute for Medical Microbiology and Virology, University Medical Center Göttingen, 37075, Göttingen, Germany
| | - Wycliffe O Masanta
- Institute for Medical Microbiology and Virology, University Medical Center Göttingen, 37075, Göttingen, Germany
- Department of Medical Microbiology, Maseno University Medical School, Private Bag, Maseno, 40105, Kenya
| | - Raimond Lugert
- Institute for Medical Microbiology and Virology, University Medical Center Göttingen, 37075, Göttingen, Germany
| | - Wolfgang Bohne
- Institute for Medical Microbiology and Virology, University Medical Center Göttingen, 37075, Göttingen, Germany
| | - Uwe Groß
- Institute for Medical Microbiology and Virology, University Medical Center Göttingen, 37075, Göttingen, Germany
| | - Andreas Leha
- Department of Medical Statistics, University Medical Center Göttingen, 37075, Göttingen, Germany
| | - Mohammed Dakna
- Department of Medical Statistics, University Medical Center Göttingen, 37075, Göttingen, Germany
| | - Christof Lenz
- Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, 37077, Göttingen, Germany
- Institute of Clinical Chemistry, Bioanalytics, University Medical Center Göttingen, 37075, Göttingen, Germany
| | - Andreas E Zautner
- Institute for Medical Microbiology and Virology, University Medical Center Göttingen, 37075, Göttingen, Germany.
- Institute of Medical Microbiology and Hospital Hygiene, Medical Faculty, Otto-von-Guericke-University Magdeburg, Leipziger Straße 44, 39120, Magdeburg, Germany.
- CHaMP, Center for Health and Medical Prevention, Otto-von-Guericke-University Magdeburg, 39120, Magdeburg, Germany.
| |
Collapse
|
2
|
Peng C, Tang J, Zhou X, Zhou H, Zhang Y, Wang S, Wang W, Xiang W, Zhang Q, Yu X, Cai T. Quantitative proteomic analysis reveals the mechanism and key esterase of β-cypermethrin degradation in a bacterial strain from fermented food. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2024; 201:105858. [PMID: 38685237 DOI: 10.1016/j.pestbp.2024.105858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 03/01/2024] [Accepted: 03/07/2024] [Indexed: 05/02/2024]
Abstract
Beta-cypermethrin (β-CY) residues in food are an important threat to human health. Microorganisms can degrade β-CY residues during fermentation of fruits and vegetables, while the mechanism is not clear. In this study, a comprehensively investigate of the degradation mechanism of β-CY in a food microorganism was conducted based on proteomics analysis. The β-CY degradation bacteria Gordonia alkanivorans GH-1 was derived from fermented Pixian Doubanjiang. Its crude enzyme extract could degrade 77.11% of β-CY at a concentration of 45 mg/L within 24 h. Proteomics analysis revealed that the ester bond of β-CY is broken under the action of esterase to produce 3-phenoxy benzoic acid, which was further degraded by oxidoreductase and aromatic degrading enzyme. The up-regulation expression of oxidoreductase and esterase was confirmed by transcriptome and quantitative reverse transcription PCR. Meanwhile, the expression of esterase Est280 in Escherichia coli BL21 (DE3) resulted in a 48.43% enhancement in the degradation efficiency of β-CY, which confirmed that this enzyme was the key enzyme in the process of β-CY degradation. This study reveals the degradation mechanism of β-CY by microorganisms during food fermentation, providing a theoretical basis for the application of food microorganisms in β-CY residues.
Collapse
Affiliation(s)
- Chuanning Peng
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China
| | - Jie Tang
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China; Food Microbiology Key Laboratory of Sichuan Province, Xihua University, Chengdu 610039, Sichuan, China; Chongqing Key Laboratory of Speciality Food Co-Built by Sichuan and Chongqing, Xihua University, Chengdu 610039, China.
| | - Xuerui Zhou
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China
| | - Hu Zhou
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China
| | - Yingyue Zhang
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China
| | - Su Wang
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China
| | - Wanting Wang
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China
| | - Wenliang Xiang
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China; Food Microbiology Key Laboratory of Sichuan Province, Xihua University, Chengdu 610039, Sichuan, China
| | - Qing Zhang
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China; Food Microbiology Key Laboratory of Sichuan Province, Xihua University, Chengdu 610039, Sichuan, China
| | - Xuan Yu
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China; Food Microbiology Key Laboratory of Sichuan Province, Xihua University, Chengdu 610039, Sichuan, China
| | - Ting Cai
- School of Food and Bioengineering, Xihua University, Chengdu 610039, Sichuan, People's Republic of China; Food Microbiology Key Laboratory of Sichuan Province, Xihua University, Chengdu 610039, Sichuan, China
| |
Collapse
|
3
|
Gao D, Li M, Tang T, Liang H, Chen G, Wang L, Bai Y, Li Y. Biodegradation of Trichloroethylene by Trametes versicolor and its Physiological Response to Contaminant Stress. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2024; 112:70. [PMID: 38676752 DOI: 10.1007/s00128-024-03898-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2023] [Accepted: 04/16/2024] [Indexed: 04/29/2024]
Abstract
Trichloroethylene (TCE) poses a potentially toxic threat to humans and the environment and widely exists in contaminated sites. White rot fungi effectively degrade refractory pollutants, while a few research studies use white rot fungi to degrade TCE. In this study, we investigated TCE biodegradation by white rot fungi and the potential influencing factors in the environment and attempted to research the effect of TCE on the physiological characteristics of white rot fungi. White rot fungi (Trametes versicolor, Pseudotrametes gibbosa, Pycnoporus sanguines and Pleurotus ostreatus) were added to the liquid medium for shock culture. The results revealed that T. versicolor exhibited the most pronounced efficacy in removing TCE, with a degradation rate of 81.10% within a 7 d period. TCE induces and is degraded by cytochrome P450 enzymes. High pH and Cr(VI) adversely affected the effectiveness of the biodegradation of TCE, but the salinity range of 0-1% had less effect on biodegradation. Overall, the effectiveness of degradation of TCE by T. versicolor has been demonstrated, and it provides a reference for the application prospects of white rot fungi in TCE-contaminated soils.
Collapse
Affiliation(s)
- Dawen Gao
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China.
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China.
| | - Meng Li
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
| | - Teng Tang
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
| | - Hong Liang
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
| | - Guanyu Chen
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
| | - Litao Wang
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
| | - Yuhong Bai
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
| | - Ying Li
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
- Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban- Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing, 100044, China
| |
Collapse
|
4
|
Hu F, Wang P, Li Y, Ling J, Ruan Y, Yu J, Zhang L. Bioremediation of environmental organic pollutants by Pseudomonas aeruginosa: Mechanisms, methods and challenges. ENVIRONMENTAL RESEARCH 2023; 239:117211. [PMID: 37778604 DOI: 10.1016/j.envres.2023.117211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 09/10/2023] [Accepted: 09/25/2023] [Indexed: 10/03/2023]
Abstract
The development of the chemical industry has led to a boom in daily consumption and convenience, but has also led to the release of large amounts of organic pollutants, such as petroleum hydrocarbons, plastics, pesticides, and dyes. These pollutants are often recalcitrant to degradation in the environment, whereby the most problematic compounds may even lead to carcinogenesis, teratogenesis and mutagenesis in animals and humans after accumulation in the food chain. Microbial degradation of organic pollutants is efficient and environmentally friendly, which is why it is considered an ideal method. Numerous studies have shown that Pseudomonas aeruginosa is a powerful platform for the remediation of environmental pollution with organic chemicals due to its diverse metabolic networks and its ability to secrete biosurfactants to make hydrophobic substrates more bioavailable, thereby facilitating degradation. In this paper, the mechanisms and methods of the bioremediation of environmental organic pollutants (EOPs) by P. aeruginosa are reviewed. The challenges of current studies are highlighted, and new strategies for future research are prospected. Metabolic pathways and critical enzymes must be further deciphered, which is significant for the construction of a bioremediation platform based on this powerful organism.
Collapse
Affiliation(s)
- Fanghui Hu
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Jiangsu, Nanjing, 210023, China
| | - Panlin Wang
- School of Bioengineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Yunhan Li
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Jiangsu, Nanjing, 210023, China
| | - Jiahuan Ling
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Jiangsu, Nanjing, 210023, China
| | - Yongqiang Ruan
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Jiangsu, Nanjing, 210023, China
| | - Jiaojiao Yu
- School of Medical Imaging, Tianjin Medical University, Tianjin, 300203, China.
| | - Lihui Zhang
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Jiangsu, Nanjing, 210023, China.
| |
Collapse
|
5
|
Zhang NC, A D, Chao YQ, Li HY, Li C, Lin QQ, Li YY, Qiu RL. Mechanism of polycyclic aromatic hydrocarbons degradation in the rhizosphere of Phragmites australis: Organic acid co-metabolism, iron-driven, and microbial response. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 327:121608. [PMID: 37044257 DOI: 10.1016/j.envpol.2023.121608] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 04/06/2023] [Accepted: 04/07/2023] [Indexed: 06/19/2023]
Abstract
Microbial co-metabolism is crucial for the efficient biodegradation of polycyclic aromatic hydrocarbons (PAHs); however, their intrinsic mechanisms remain unclear. To explore the co-metabolic degradation of PAHs, root organic acids (ROAs) (phenolic ROAs: caffeic acid [CA] and ferulic acid [FA]; non-phenolic ROAs: oxalic acid [OA]) were exogenously added as co-metabolic substrates under high (HFe) and low (LFe) iron levels in this study. The results demonstrated that more than 90% of PAHs were eliminated from the rhizosphere of Phragmites australis. OA can promote the enrichment of unrelated degrading bacteria and non-specific dioxygenases. FA with a monohydroxy structure can activate hydroxylase; however, it relies on phytosiderophores released by plants (such as OA) to adapt to stress. Therefore, non-specific co-metabolism occurred in these units. The best performance for PAH removal was observed in the HFe-CA unit because: (a) HFe concentrations enriched the Fe-reducing and denitrifying bacteria and promoted the rate-limiting degradation for PAHs as the enzyme cofactor; (b) CA with a dihydroxyl structure enriched the related degrading bacteria, stimulated specific dioxygenase, and activated Fe to concentrate around the rhizosphere simultaneously to perform the specific co-metabolism. Understanding the co-metabolic degradation of PAHs will help improve the efficacy of rhizosphere-mediated remediation.
Collapse
Affiliation(s)
- Ni-Chen Zhang
- School of Environmental Science and Engineering, Guangdong Provincial Key Lab for Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510006, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Dan A
- Engineering and Technology Research Center for Agricultural Land Pollution Integrated Prevention and Control of Guangdong Higher Education Institute, College of Resources and Environment, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China
| | - Yuan-Qing Chao
- School of Environmental Science and Engineering, Guangdong Provincial Key Lab for Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510006, China
| | - Hai-Yan Li
- Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs & Guangdong Provincial Key Laboratory of Aquatic Animal Immunology and Sustainable Aquaculture, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, 510380, China
| | - Charles Li
- Department of Public Health, California State University, East Bay, CA, 94542, USA
| | - Qing-Qi Lin
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China; Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Ya-Ying Li
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
| | - Rong-Liang Qiu
- School of Environmental Science and Engineering, Guangdong Provincial Key Lab for Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510006, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China; Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China.
| |
Collapse
|
6
|
Gu S, Cui J, Liu F, Chen J. Biochar loaded with cobalt ferrate activated persulfate to degrade naphthalene. RSC Adv 2023; 13:5283-5292. [PMID: 36777931 PMCID: PMC9912118 DOI: 10.1039/d2ra08120b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 02/06/2023] [Indexed: 02/12/2023] Open
Abstract
Considering the simple preparation of biochar and the excellent activation performance of cobalt ferrate material, a biochar supported cobalt ferrate composite was synthesized by a solvothermal method. The material was used to activate persulfate (PS) to degrade naphthalene (NAP) in water. The structure and morphology characterization showed that the composite (CoFe2O4-BC) was successfully prepared. Under the conditions of 0.25 g L-1 CoFe2O4-BC and 1 mM PS, 90.6% NAP (the initial concentration was 0.1 mM) was degraded after 30 minutes. The degradation kinetics of NAP followed the pseudo-first-order kinetic model with a rate constant of 0.0645 min-1. With the increase of the dosage of activator and PS, the removal rate of NAP could be increased to 99.5%. The coexistence of anions and humic acids inhibited the removal of NAP. The acid environment promoted the removal of NAP while the alkaline environment inhibited it. After four cycles of CoFe2O4-BC material, the removal rate of NAP decreased from 90.6% to 79.4%. The removal of TOC was about 45% after each cycle. After the first cycle, the concentration of leached cobalt ion and leached iron ion was about 310 μg L-1 and 30 μg L-1 respectively. The free radical quenching experiments showed that SO4 -˙ and OH˙ were the main causes of NAP removal, and the possible degradation path of NAP was elucidated by DFT calculation.
Collapse
Affiliation(s)
- Shuaijie Gu
- School of Environmental and Chemical Engineering, Shanghai University 99 Shangda Road Shanghai 200444 PR China
| | - Jingying Cui
- School of Environmental and Chemical Engineering, Shanghai University 99 Shangda Road Shanghai 200444 PR China
| | - Fangqin Liu
- School of Environmental and Chemical Engineering, Shanghai University 99 Shangda Road Shanghai 200444 PR China
| | - Jinyang Chen
- School of Environmental and Chemical Engineering, Shanghai University 99 Shangda Road Shanghai 200444 PR China
| |
Collapse
|