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Tao Y, Zhao Q, Liu F, Liang X, Li Q. Enzymes encapsulated in organic-inorganic hybrid nanoflower with spatial localization for sensitive and colorimetric detection of formate. J Colloid Interface Sci 2024; 672:97-106. [PMID: 38833738 DOI: 10.1016/j.jcis.2024.05.231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 05/21/2024] [Accepted: 05/31/2024] [Indexed: 06/06/2024]
Abstract
Formate is an important environmental pollutant, and meanwhile its concentration change is associated with a variety of diseases. Thus, rapid and sensitive detection of formate is critical for the biochemical analysis of complex samples and clinical diagnosis of multiple diseases. Herein, a colorimetric biosensor was constructed based on the cascade catalysis of formate oxidase (FOx) and horseradish peroxidase (HRP). These two enzymes were co-immobilized in Cu3(PO4)2-based hybrid nanoflower with spatial localization, in which FOx and HRP were located in the shell and core of nanoflower, respectively (FOx@HRP). In this system, FOx could catalyze the oxidation of formate to generate H2O2, which was then utilized by HRP to oxidize 2,2'-azino-bis-3-ethylbenzothiazoline-6-sulphonic acid to yield blue product. Ideal linear correlation could be obtained between the absorbance at 420 nm and formate concentration. Meanwhile, FOx@HRP exhibited excellent detection performance with low limit of detection (6 μM), wide linear detection range (10-900 μM), and favorable specificity, stability and reusability. Moreover, it could be applied in the detection of formate in environmental, food and biological samples with high accuracy. Collectively, FOx@HRP provides a useful strategy for the simple and sensitive detection of formate and is potentially to be used in biochemical analysis and clinical diagnosis.
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Affiliation(s)
- Yu Tao
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China
| | - Qixuan Zhao
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China
| | - Fengmei Liu
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China
| | - Xiao Liang
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China.
| | - Quanshun Li
- Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, School of Life Sciences, Jilin University, Changchun 130012, China; Center for Supramolecular Chemical Biology, Jilin University, Changchun 130012, China.
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3
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Cai Y, Niu L, Liu X, Zhang Y, Zheng Z, Zeng L, Liu A. Hierarchical porous MoS 2 particles: excellent multi-enzyme-like activities, mechanism and its sensitive phenol sensing based on inhibition of sulfite oxidase mimics. JOURNAL OF HAZARDOUS MATERIALS 2022; 425:128053. [PMID: 34915296 DOI: 10.1016/j.jhazmat.2021.128053] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 11/25/2021] [Accepted: 12/07/2021] [Indexed: 05/14/2023]
Abstract
It is important to exploit highly efficient methods for detecting pollutants selectively and sensitively. Artificial enzymes are promising to replace natural enzymes with diverse functions for sustainable developments and various applications. However, it remains the challenge to develop novel mimic enzymes or multi-enzyme mimics for pollutant detection. Herein we report hierarchical porous MoS2 particles prepared by a simple hydrothermal method, which demonstrated excellent sulfite oxidase (SuOx)-, nicotinamide adenine dinucleotide (NADH) oxidase- and superoxide dismutase-mimicking activities. In addition, the catalytic conditions for SuOx-like and NADH oxidase-like activities of MoS2 were optimized. The catalytic mechanism of the NADH oxidase mimics is that O2 involves in the oxidation of NADH, to generate O2.- intermediate and finally turn to H2O2, while SuOx mimics comes from that MoS2 particles can effectively catalyze sulfite to reduce [Fe(CN)6]3-. Based on the excellent SuOx-like activity of MoS2 particles, while phenol can inhibit the oxidation of sulfite, a phenol colorimetric sensor was explored with the dynamic range of 2-1000 μM and the limit of detection of 0.72 μM, applicable to detect phenol in effluents. Therefore, MoS2 particles with the SuOx-like, NADH oxidase-like and SOD-like activities has broad application prospects in environmental monitoring and bio-analysis.
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Affiliation(s)
- Yuanyuan Cai
- Institute for Chemical Biology & Biosensing, College of Life Sciences, and School of Pharmacy, Medical College, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Lingxi Niu
- Institute for Chemical Biology & Biosensing, College of Life Sciences, and School of Pharmacy, Medical College, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Xuan Liu
- Institute for Chemical Biology & Biosensing, College of Life Sciences, and School of Pharmacy, Medical College, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Yujiao Zhang
- Institute for Chemical Biology & Biosensing, College of Life Sciences, and School of Pharmacy, Medical College, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Zongmei Zheng
- Institute for Chemical Biology & Biosensing, College of Life Sciences, and School of Pharmacy, Medical College, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Lingxing Zeng
- College of Environmental Science and Engineering, Fujian Key Laboratory of Pollution Control & Resource Reuse, Fujian Normal University, Fuzhou, Fujian 350007, China
| | - Aihua Liu
- Institute for Chemical Biology & Biosensing, College of Life Sciences, and School of Pharmacy, Medical College, Qingdao University, 308 Ningxia Road, Qingdao 266071, China.
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4
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Moraskie M, Roshid MHO, O'Connor G, Dikici E, Zingg JM, Deo S, Daunert S. Microbial whole-cell biosensors: Current applications, challenges, and future perspectives. Biosens Bioelectron 2021; 191:113359. [PMID: 34098470 PMCID: PMC8376793 DOI: 10.1016/j.bios.2021.113359] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 05/13/2021] [Accepted: 05/15/2021] [Indexed: 12/22/2022]
Abstract
Microbial Whole-Cell Biosensors (MWCBs) have seen rapid development with the arrival of 21st century biological and technological capabilities. They consist of microbial species which produce, or limit the production of, a reporter protein in the presence of a target analyte. The quantifiable signal from the reporter protein can be used to determine the bioavailable levels of the target analyte in a variety of sample types at a significantly lower cost than most widely used and well-established analytical instrumentation. Furthermore, the versatile and robust nature of MWCBs shows great potential for their use in otherwise unavailable settings and environments. While MWCBs have been developed for use in biomedical, environmental, and agricultural monitoring, they still face various challenges before they can transition from the laboratory into industrialized settings like their enzyme-based counterparts. In this comprehensive and critical review, we describe the underlying working principles of MWCBs, highlight developments for their use in a variety of fields, detail challenges and current efforts to address them, and discuss exciting implementations of MWCBs helping redefine what is thought to be possible with this expeditiously evolving technology.
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Affiliation(s)
- Michael Moraskie
- Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA; The Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute - BioNIUM, University of Miami, Miami, FL, 33136, USA
| | - Md Harun Or Roshid
- Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA; The Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute - BioNIUM, University of Miami, Miami, FL, 33136, USA; Department of Chemistry, University of Miami, Miami, FL, 33146, USA
| | - Gregory O'Connor
- Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA; The Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute - BioNIUM, University of Miami, Miami, FL, 33136, USA
| | - Emre Dikici
- Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA; The Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute - BioNIUM, University of Miami, Miami, FL, 33136, USA
| | - Jean-Marc Zingg
- Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA; The Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute - BioNIUM, University of Miami, Miami, FL, 33136, USA
| | - Sapna Deo
- Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA; The Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute - BioNIUM, University of Miami, Miami, FL, 33136, USA
| | - Sylvia Daunert
- Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA; The Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute - BioNIUM, University of Miami, Miami, FL, 33136, USA; Department of Chemistry, University of Miami, Miami, FL, 33146, USA; The Miami Clinical and Translational Science Institute, University of Miami, Miami, FL, 33146, USA; Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL, 33146, USA.
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Chen Z, Xiao Y, Weber G, Wei R, Wang Z. Yeast cell surface display of bacterial PET hydrolase as a sustainable biocatalyst for the degradation of polyethylene terephthalate. Methods Enzymol 2021; 648:457-477. [PMID: 33579416 DOI: 10.1016/bs.mie.2020.12.030] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Enzymatic hydrolysis of polyethylene terephthalate (PET) is considered to be an environmentally friendly method for the recycling of plastic waste. Recently, a bacterial enzyme named IsPETase was found in Ideonella sakaiensis with the ability to degrade amorphous PET at ambient temperature suggesting its possible use in recycling of PET. However, applying the purified IsPETase in large-scale PET recycling has limitations, i.e., a complicated production process, high cost of single-use, and instability of the enzyme. Yeast cell surface display has proven to be an effectual alternative for improving enzyme degradation efficiency and realizing industrial applications. This chapter deals with the construction and application of a whole-cell biocatalyst by displaying IsPETase on the surface of yeast (Pichia pastoris) cells.
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Affiliation(s)
- Zhuozhi Chen
- School of Life Sciences, Tianjin University, Tianjin, China
| | - Yunjie Xiao
- School of Life Sciences, Tianjin University, Tianjin, China
| | - Gert Weber
- Macromolecular Crystallography, Helmholtz-Zentrum Berlin, Berlin, Germany
| | - Ren Wei
- Junior Research Group Plastic Biodegradation, Institute of Biochemistry, University of Greifswald, Greifswald, Germany
| | - Zefang Wang
- School of Life Sciences, Tianjin University, Tianjin, China.
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6
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Microbial cell surface display of oxidoreductases: Concepts and applications. Int J Biol Macromol 2020; 165:835-841. [DOI: 10.1016/j.ijbiomac.2020.09.237] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2020] [Revised: 09/21/2020] [Accepted: 09/27/2020] [Indexed: 12/17/2022]
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Bulut H, Valjakka J, Yuksel B, Yilmazer B, Turunen O, Binay B. Effect of Metal Ions on the Activity of Ten NAD-Dependent Formate Dehydrogenases. Protein J 2020; 39:519-530. [PMID: 33043425 DOI: 10.1007/s10930-020-09924-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/01/2020] [Indexed: 11/25/2022]
Abstract
NAD-dependent formate dehydrogenase (FDH) enzymes are frequently used in industrial and scientific applications. FDH is a reversible enzyme that reduces the NAD molecule to NADH and produces CO2 by oxidation of the formate ion, whereas it causes CO2 reduction in the reverse reaction. Some transition metal elements - Fe3+, Mo6+ and W6 + - can be found in the FDH structure of anaerobic and archaeal microorganisms, and these enzymes require cations and other redox-active cofactors for their FDH activity. While NAD-dependent FDHs do not necessarily require any metal cations, the presence of various metal cations can still affect FDH activities. To study the effect of 11 different metal ions, NAD-dependent FDH enzymes from ten different microorganisms were tested: Ancylobacter aquaticus (AaFDH), Candida boidinii (CboFDH), Candida methylica (CmFDH), Ceriporiopsis subvermispora (CsFDH), Chaetomium thermophilum (CtFDH), Moraxella sp. (MsFDH), Myceliophthora thermophila (MtFDH), Paracoccus sp. (PsFDH), Saccharomyces cerevisiae (ScFDH) and Thiobacillus sp. (TsFDH). It was found that metal ions (mainly Cu2+ and Zn2+) could have quite strong inhibition effects on several enzymes in the forward reaction, whereas several cations (Li+, Mg2+, Mn2+, Fe3+ and W6+) could increase the forward reaction of two FDHs. The highest activity increase (1.97 fold) was caused by Fe3+ in AaFDH. The effect on the reverse reaction was minimal. The modelled structures of ten FDHs showed that the active site is formed by 15 highly conserved amino acid residues spatially settling around the formate binding site in a conserved way. However, the residue differences at some of the sites close to the substrate do not explain the activity differences. The active site space is very tight, excluding water molecules, as observed in earlier studies. Structural examination indicated that smaller metal ions might be spaced close to the active site to affect the reaction. Metal ion size showed partial correlation to the effect on inhibition or activation. Affinity of the substrate may also affect the sensitivity to the metal's effect. In addition, amino acid differences on the protein surface may also be important for the metal ion effect.
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Affiliation(s)
- Huri Bulut
- Medical Biochemistry Department, Faculty of Medicine, Istinye University, Istanbul, Turkey
| | - Jarkko Valjakka
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
| | - Busra Yuksel
- Molecular Biology and Genetics Department, Istanbul Technical University, Istanbul, Turkey
| | - Berin Yilmazer
- Molecular Biology and Genetics Department, Gebze Technical University, Kocaeli, Turkey
| | - Ossi Turunen
- School of Forest Sciences, Faculty of Science and Forestry, University of Eastern Finland, Joensuu, Finland
| | - Baris Binay
- Department of Bioengineering, Gebze Technical University, Kocaeli, Turkey.
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Kim S, Lindner SN, Aslan S, Yishai O, Wenk S, Schann K, Bar-Even A. Growth of E. coli on formate and methanol via the reductive glycine pathway. Nat Chem Biol 2020; 16:538-545. [PMID: 32042198 DOI: 10.1038/s41589-020-0473-5] [Citation(s) in RCA: 160] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 12/16/2019] [Accepted: 01/09/2020] [Indexed: 12/14/2022]
Abstract
Engineering a biotechnological microorganism for growth on one-carbon intermediates, produced from the abiotic activation of CO2, is a key synthetic biology step towards the valorization of this greenhouse gas to commodity chemicals. Here we redesign the central carbon metabolism of the model bacterium Escherichia coli for growth on one-carbon compounds using the reductive glycine pathway. Sequential genomic introduction of the four metabolic modules of the synthetic pathway resulted in a strain capable of growth on formate and CO2 with a doubling time of ~70 h and growth yield of ~1.5 g cell dry weight (gCDW) per mol-formate. Short-term evolution decreased doubling time to less than 8 h and improved biomass yield to 2.3 gCDW per mol-formate. Growth on methanol and CO2 was achieved by further expression of a methanol dehydrogenase. Establishing synthetic formatotrophy and methylotrophy, as demonstrated here, paves the way for sustainable bioproduction rooted in CO2 and renewable energy.
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Affiliation(s)
- Seohyoung Kim
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Steffen N Lindner
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Selçuk Aslan
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Oren Yishai
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Sebastian Wenk
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Karin Schann
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Arren Bar-Even
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
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Xiao X, Xia HQ, Wu R, Bai L, Yan L, Magner E, Cosnier S, Lojou E, Zhu Z, Liu A. Tackling the Challenges of Enzymatic (Bio)Fuel Cells. Chem Rev 2019; 119:9509-9558. [PMID: 31243999 DOI: 10.1021/acs.chemrev.9b00115] [Citation(s) in RCA: 177] [Impact Index Per Article: 35.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The ever-increasing demands for clean and sustainable energy sources combined with rapid advances in biointegrated portable or implantable electronic devices have stimulated intensive research activities in enzymatic (bio)fuel cells (EFCs). The use of renewable biocatalysts, the utilization of abundant green, safe, and high energy density fuels, together with the capability of working at modest and biocompatible conditions make EFCs promising as next generation alternative power sources. However, the main challenges (low energy density, relatively low power density, poor operational stability, and limited voltage output) hinder future applications of EFCs. This review aims at exploring the underlying mechanism of EFCs and providing possible practical strategies, methodologies and insights to tackle these issues. First, this review summarizes approaches in achieving high energy densities in EFCs, particularly, employing enzyme cascades for the deep/complete oxidation of fuels. Second, strategies for increasing power densities in EFCs, including increasing enzyme activities, facilitating electron transfers, employing nanomaterials, and designing more efficient enzyme-electrode interfaces, are described. The potential of EFCs/(super)capacitor combination is discussed. Third, the review evaluates a range of strategies for improving the stability of EFCs, including the use of different enzyme immobilization approaches, tuning enzyme properties, designing protective matrixes, and using microbial surface displaying enzymes. Fourth, approaches for the improvement of the cell voltage of EFCs are highlighted. Finally, future developments and a prospective on EFCs are envisioned.
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Affiliation(s)
- Xinxin Xiao
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China.,Department of Chemical Sciences and Bernal Institute , University of Limerick , Limerick V94 T9PX , Ireland
| | - Hong-Qi Xia
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China
| | - Ranran Wu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , 32 West seventh Road, Tianjin Airport Economic Area , Tianjin 300308 , China
| | - Lu Bai
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China
| | - Lu Yan
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China
| | - Edmond Magner
- Department of Chemical Sciences and Bernal Institute , University of Limerick , Limerick V94 T9PX , Ireland
| | - Serge Cosnier
- Université Grenoble-Alpes , DCM UMR 5250, F-38000 Grenoble , France.,Département de Chimie Moléculaire , UMR CNRS, DCM UMR 5250, F-38000 Grenoble , France
| | - Elisabeth Lojou
- Aix Marseille Univ, CNRS, BIP, Bioénergétique et Ingénierie des Protéines UMR7281 , Institut de Microbiologie de la Méditerranée, IMM , FR 3479, 31, chemin Joseph Aiguier 13402 Marseille , Cedex 20 , France
| | - Zhiguang Zhu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , 32 West seventh Road, Tianjin Airport Economic Area , Tianjin 300308 , China
| | - Aihua Liu
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China.,College of Chemistry & Chemical Engineering , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China.,School of Pharmacy, Medical College , Qingdao University , Qingdao 266021 , China
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10
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Expression of xylanase on Escherichia coli using a truncated ice nucleation protein of Erwinia ananas (InaA). Process Biochem 2019. [DOI: 10.1016/j.procbio.2019.01.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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11
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Zhu B, Wei N. Biocatalytic Degradation of Parabens Mediated by Cell Surface Displayed Cutinase. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:354-364. [PMID: 30507170 DOI: 10.1021/acs.est.8b05275] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Parabens are emerging environmental contaminants with known endocrine-disrupting effects. This study created a novel biocatalyst (named as SDFsC) by expressing the enzyme Fusarium solani pisi cutinase (FsC) on the cell surface of Baker's yeast Sacchromycese cerevisiae and demonstrated successful enzyme-mediated removal of parabens for the first time. Parabens with different side chain structures had different degradation rates by the SDFsC. The SDFsC preferentially degraded the parabens with relatively long alkyl or aromatic side chains. The structure-dependent degradability was in a good agreement with the binding energy between the active site of FsC and different parabens. In real wastewater effluent solution, the SDFsC effectively degraded 800 μg/L of propylparaben, butylparaben, and benzylparaben, either as a single compound or as a mixture, within 48 h. The estrogenic activity of parabens was considerably reduced as the parent parabens were degraded into 4-hydroxybenzoic acid via hydrolysis pathway by the SDFsC. The SDFsC showed superior reusability and maintained 93% of its initial catalytic activity after six rounds of paraben degradation reaction. Results from this study provide scientific basis for developing biocatalysis as a green chemistry alternative for advanced treatment of parabens in sustainable water reclamation.
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Affiliation(s)
- Baotong Zhu
- Department of Civil and Environmental Engineering and Earth Sciences , University of Notre Dame , 156 Fitzpatrick Hall , Notre Dame , Indiana 46556 , United States
| | - Na Wei
- Department of Civil and Environmental Engineering and Earth Sciences , University of Notre Dame , 156 Fitzpatrick Hall , Notre Dame , Indiana 46556 , United States
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12
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Ionic Liquids as Bifunctional Cosolvents Enhanced CO2 Conversion Catalysed by NADH-Dependent Formate Dehydrogenase. Catalysts 2018. [DOI: 10.3390/catal8080304] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Efficient CO2 conversion by formate dehydrogenase is limited by the low CO2 concentrations that can be reached in traditional buffers. The use of ionic liquids was proposed as a manner to increase CO2 concentration in the reaction system. It has been found, however, that the required cofactor (NADH) heavily degraded during the enzymatic reaction and that acidity was the main reason. Acidity, indeed, resulted in reduction of the conversion of CO2 into formic acid and contributed to overestimate the amount of formic acid produced when the progression of the reaction was followed by a decrease in NADH absorbance (method N). Stability of NADH and the mechanism of NADH degradation was investigated by UV, NMR and by DFT calculations. It was found that by selecting neutral–basic ionic liquids and by adjusting the concentration of the ionic liquid in the buffer, the concentration of NADH can be maintained in the reaction system with little loss. Conversion of CO2 to methanol in BmimBF4 (67.1%) was more than twice as compared with the conversion attained by the enzymatic reaction in phosphate buffer (24.3%).
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13
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Yang C, Xu X, Liu Y, Jiang H, Wu Y, Xu P, Liu R. Simultaneous hydrolysis of carbaryl and chlorpyrifos by Stenotrophomonas sp. strain YC-1 with surface-displayed carbaryl hydrolase. Sci Rep 2017; 7:13391. [PMID: 29042673 PMCID: PMC5645314 DOI: 10.1038/s41598-017-13788-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2017] [Accepted: 10/03/2017] [Indexed: 12/24/2022] Open
Abstract
Many sites are often co-contaminated with multiple pesticides. To date, there are no reports on simultaneous degradation of different classes of pesticides by a natural microorganism. In this work, we aim at constructing a live biocatalyst able to simultaneously hydrolyze carbaryl and chlorpyrifos. For this purpose, carbaryl hydrolase (CH) was displayed on the cell surface of a chlorpyrifos-degrading bacterium Stenotrophomonas sp. strain YC-1 using N- and C-terminal domain of ice nucleation protein (INPNC) from Pseudomonas syringae INA5 as an anchoring motif. The localization of INPNC-CH fusion protein in the outer membrane fraction was demonstrated by cell fractionation followed by Western blot analysis. Surface display of INPNC-CH was further confirmed by proteinase accessibility experiment and immunofluorescence microscope. CH was present in an active form on cell surface without causing any growth inhibition, suggesting that the INP-based display system is a useful tool for surface expression of macromolecular heterologous proteins on the bacterial cell surface. Because surface-displayed CH has free access to pesticides, this bacterium can be used as a whole-cell biocatalyst for efficient hydrolysis of pesticides.
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Affiliation(s)
- Chao Yang
- College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Xiaoqing Xu
- College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Yanping Liu
- Department of Gynaecology and Obstetrics, Tianjin Medical University General Hospital, Tianjin, 300052, China.
| | - Hong Jiang
- Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yunbo Wu
- College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Ping Xu
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Ruihua Liu
- College of Life Sciences, Nankai University, Tianjin, 300071, China.
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14
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Han L, Liu A. Novel Cell-Inorganic Hybrid Catalytic Interfaces with Enhanced Enzymatic Activity and Stability for Sensitive Biosensing of Paraoxon. ACS APPLIED MATERIALS & INTERFACES 2017; 9:6894-6901. [PMID: 28199084 DOI: 10.1021/acsami.6b15992] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
To improve the biosensing performance of organophosphorus hydrolase (OPH), the novel bioinorganic hybrid catalysts were facilely explored by biomineralization and cell surface display technology. During biomineralization, cobalt phosphate crystals were deposited onto the surface of OPH-fused bacteria, and the inorganic crystals at middle of cell collapsed inwardly to form the final spindle morphology because of the lowest energy principle and the mechanics principle. OPH would show the allosteric effect from "inactive" form to "active" form, and the "active" form was "fixed" when OPH was embedded into cobalt phosphate. Therefore, the activity of mineralized OPH-fused cells was greatly enhanced about 3 times in comparison with original OPH-fused cells. Additionally, the stability of the novel hybrid catalysts was also significantly improved. Further, the as-synthesized bioinorganic hybrid catalysts were applied to sensitive paraoxon biosensing, which exhibited lower limit of detection than that of the original counterpart. Thus, this hybrid biocatalytic system would provide a model to develop a wide range of biocatalysts and find a wide range of applications in industrial catalysis, analytical chemistry, and environmental engineering.
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Affiliation(s)
- Lei Han
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University , 700 Changcheng Road, Qingdao 266109, China
| | - Aihua Liu
- Institute for Biosensing & In-Vitro Diagnostics and College of Chemistry & Chemical Engineering, Qingdao University , 308 Ningxia Road, Qingdao 266071, China
- Joint Key Laboratory for Biosensors of Shangdong Province, Qingdao University , 308 Ningxia Road, Qingdao 266071, China
- College of Medicine, Qingdao University , Qingdao 266021, China
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15
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Sensitive detection of maltose and glucose based on dual enzyme-displayed bacteria electrochemical biosensor. Biosens Bioelectron 2017; 87:25-30. [DOI: 10.1016/j.bios.2016.07.050] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2016] [Revised: 07/04/2016] [Accepted: 07/14/2016] [Indexed: 11/23/2022]
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