Unraveling microbial structure and diversity of activated sludge in a full-scale simultaneous nitrogen and phosphorus removal plant using metagenomic sequencing

National-scale antimicrobial resistance surveillance in wastewater: A comparative analysis of HT qPCR and metagenomic approaches

Wastewater serves as an important reservoir of antimicrobial resistance (AMR), and its surveillance can provide insights into population-level trends in AMR to inform public health policy. This study compared two common high-throughput screening approaches, namely (i) high-throughput quantitative PCR (HT qPCR), targeting 73 antimicrobial resistance genes, and (ii) metagenomic sequencing. Weekly composite samples of wastewater influent were taken from 47 wastewater treatment plants (WWTPs) across Wales, as part of a national AMR surveillance programme, alongside 4 weeks of daily wastewater effluent samples from a large municipal hospital. Metagenomic analysis provided more comprehensive resistome coverage, detecting 545 genes compared to the targeted 73 genes by HT qPCR. It further provided contextual information critical to risk assessment (i.e. potential bacterial hosts). In contrast, HT qPCR exhibited higher sensitivity, quantifying all targeted genes including those of clinical relevance present at low abundance. When limited to the HT qPCR target genes, both methods were able to reflect the spatiotemporal dynamics of the complete metagenomic resistome, distinguishing that of the hospital and the WWTPs. Both approaches revealed correlations between resistome compositional shifts and environmental variables like ammonium wastewater concentration, though differed in their interpretation of some potential influencing factors. Overall, metagenomics provides more comprehensive resistome profiling, while qPCR permits sensitive quantification of genes significant to clinical resistance. We highlight the importance of selecting appropriate methodologies aligned to surveillance aims to guide the development of effective wastewater-based AMR monitoring programmes.

Treatment of high ammonia anaerobically digested molasses wastewater using aerobic granular sludge reactor

This study addressed the treatment of high ammonia, low biodegradable chemical oxygen demand (bCOD) anaerobically digested molasses wastewater, utilizing an aerobic granular sludge (AGS) reactor. The AGS achieved 99 % ammonia removal regardless of the bCOD supplementation. By adding low ammonia (<60 mg/L), high bCOD raw molasses wastewater (before anaerobic digestion) as a carbon source, enhanced nitrogen removal, increasing from 10 % to 97 %, and improved sludge settleability via bio-induced calcite precipitation were observed. Functional genes prediction suggested two potential denitrification pathways, including heterotrophic denitrification by Paracoccus and Thauera, and autotrophic denitrification, specifically sulfide-oxidizing autotrophic denitrification by Thiobacillus. An increase in the relative abundance of microorganisms involved in heterotrophic denitrification was observed with the addition of high bCOD raw molasses wastewater. Consequently, incorporating raw molasses wastewater into the AGS presents a sustainable approach to achieve mixotrophic denitrification, maintain stable granular sludge and ensure stable treatment performance when treating anaerobically digested molasses wastewater.

Revealing the functional potential of microbial community of activated sludge for treating tuna processing wastewater through metagenomic analysis

Reports regarding the composition and functions of microorganisms in activated sludge from wastewater treatment plants for treating tuna processing wastewater remains scarce, with prevailing studies focusing on municipal and industrial wastewater. This study delves into the efficiency and biological dynamics of activated sludge from tuna processing wastewater, particularly under conditions of high lipid content, for pollutant removal. Through metagenomic analysis, we dissected the structure of microbial community, and its relevant biological functions as well as pathways of nitrogen and lipid metabolism in activated sludge. The findings revealed the presence of 19 phyla, 1,880 genera, and 7,974 species, with Proteobacteria emerging as the predominant phylum. The study assessed the relative abundance of the core microorganisms involved in nitrogen removal, including Thauera sp. MZ1T and Alicycliphilus denitrificans K601, among others. Moreover, the results also suggested that a diverse array of fatty acid-degrading microbes, such as Thauera aminoaromatica and Cupriavidus necator H16, could thrive under lipid-rich conditions. This research can provide some referable information for insights into optimizing the operations of wastewater treatment and identify some potential microbial agents for nitrogen and fatty acid degradation.

Multi-omics analysis of nitrifying sludge under carbon disulfide stress: Nitrification performance and molecular mechanisms

Carbon disulfide (CS2) is a widely used enzyme inhibitor with cytotoxic properties, commonly employed in viscose fibers and cellophane production due to its non-polar characteristics. In industry, CS2 is often removed by aeration, however, residual CS2 may enter the wastewater treatment plants, impacting the performance of nitrifying sludge. Currently, there is a notable dearth of research on the response of nitrifying sludge to CS2-induced stress. This study delves into the alterations in the performance of nitrifying sludge under short-term and long-term CS2 stress, scrutinizes the toxic effects of CS2 on microbial cells, elucidates the succession of microbial community structure, and delineates changes in microbial metabolic products. The findings from short-term CS2 stress revealed that low concentrations of CS2 induced oxidative stress damage, which was subsequently repaired in cells. However, at concentrations of 100-200 mg/L, CS2 inhibited reactive oxygen species, superoxide dismutase, and catalase, which are associated with metabolic and antioxidant activities. The inhibition of nitrite oxidoreductase activity by high concentrations of CS2 was attributed to its impact on the enzyme's conformation. Prolonged CS2 stress resulted in an increase in the secretion of soluble extracellular polymeric substances in sludge, while CS2 was assimilated into sulfate. The analysis of sludge microbial community structure revealed a decline in the relative abundance of Rhodanobacter, which is associated with nitrification, and an increase in Sinomonas, involved in sulfur oxidation. Metabolite analysis results demonstrated that high concentrations of CS2 affect pantothenate and CoA biosynthesis, purine metabolism, and glutathione metabolism. This study elucidated the microbial response mechanism of nitrifying sludge under short-term and long-term CS2 stress. It also clarified the composition and function of microbial ecosystems, and identified key bacterial species and metabolites. It provides a basis for future research to reduce CS2 inhibition through approaches such as the addition of metal ions, the selection of efficient CS2-degrading strains, and the modification of strain metabolic pathways.

Unraveling the shift in bacterial communities profile grown in sediments co-contaminated with chlorolignin waste of pulp-paper mill by metagenomics approach

Pulp-paper mills (PPMs) are known for consistently generating a wide variety of pollutants, that are often unidentified and highly resistant to environmental degradation. The current study aims to investigate the changes in the indigenous bacterial communities profile grown in the sediment co-contaminated with organic and inorganic pollutants discharged from the PPMs. The two sediment samples, designated PPS-1 and PPS-2, were collected from two different sites. Physico-chemical characterization of PPS-1 and PPS-2 revealed the presence of heavy metals (mg kg-1) like Cu (0.009-0.01), Ni (0.005-0.002), Mn (0.078-0.056), Cr (0.015-0.009), Pb (0.008-0.006), Zn (0.225-0.086), Fe (2.124-0.764), Al (3.477-22.277), and Ti (99.792-45.012) along with high content of chlorophenol, and lignin. The comparative analysis of organic pollutants in sediment samples using gas chromatography-mass spectrometry (GC-MS) revealed the presence of major highly refractory compounds, such as stigmasterol, β-sitosterol, hexadecanoic acid, octadecanoic acid; 2,4-di-tert-butylphenol; heptacosane; dimethyl phthalate; hexachlorobenzene; 1-decanol,2-hexyl; furane 2,5-dimethyl, etc in sediment samples which are reported as a potential toxic compounds. Simultaneously, high-throughput sequencing targeting the V3-V4 hypervariable region of the 16S rRNA genes, resulted in the identification of 1,249 and 1,345 operational taxonomic units (OTUs) derived from a total of 115,665 and 119,386 sequences read, in PPS-1 and PPS-2, respectively. Analysis of rarefaction curves indicated a diversity in OTU abundance between PPS-1 (1,249 OTUs) and PPS-2 (1,345 OTUs). Furthermore, taxonomic assignment of metagenomics sequence data showed that Proteobacteria (55.40%; 56.30%), Bacteoidetes (11.30%; 12.20%), and Planctomycetes (5.40%; 4.70%) were the most abundant phyla; Alphproteobacteria (20.50%; 23.50%), Betaproteobacteria (16.00%; 12.30%), and Gammaproteobacteria were the most recorded classes in PPS-1 and PPS-2, respectively. At the genus level, Thiobacillus (7.60%; 4.50%) was the most abundant genera grown in sediment samples. The results indicate significant differences in both the diversity and relative abundance of taxa in the bacterial communities associated with PPS-2 when compared to PPS-1. This study unveils key insights into contaminant characteristics and shifts in bacterial communities within contaminated environments. It highlights the potential for developing efficient bioremediation techniques to restore ecological balance in pulp-paper mill waste-polluted areas, stressing the importance of identifying a significant percentage of unclassified genera and species to explore novel genes.

A comprehensive investigation to the fate of phosphorus in full-scale wastewater treatment plants using aluminum salts for enhanced phosphorus removal

This study investigated the fate of phosphorus (P) in 8 full-scale municipal wastewater treatment plants (WWTPs) in Shanghai, China, in which both biological nutrient removal and aluminum-based chemical phosphorus removal were used. The results showed that 83.8-98.9 % P was transferred to the sludge in the 8 WWTPs by both chemical and biological reactions. P speciation analysis indicated that chemical P precipitates accounted for 84.3 % in the activated sludge, of which crystalline AlPO4 and amorphous iron‑phosphorus compounds (FePs) were the main components. Sludge with more water-soluble and weakly adsorbed P was generated in the anaerobic-anoxic-oxic (A/A/O) process than in other processes. Among the 8 WWTPs, the one with the largest flow rate and relatively short sludge retention time (SRT) had the best potential to release P from all types of sludge. The recovery potential of P from thickened sludge can be improved by separately thickening the sludge produced in the high-efficiency sedimentation tank or feeding it into the dewatering process directly. Different P removal chemicals and dosing points changed the amount of chemical precipitate formed but had little effect on the composition of P accumulating organisms (PAOs) at the genus level. Although aluminum-based coagulants were applied in the investigated WWTPs, Fe in wastewater had the most positive effect on the proliferation of PAOs. The synthesis of polyphosphate was also related to the metabolism of PAOs as it affected transmembrane inorganic phosphate (Pi) transport and polyhydroxybutyrate (PHB) synthesis. The in-depth understanding of the fate of P is beneficial to improve P recovery efficiency in WWTPs.

Metagenomic analysis of the microbial communities and associated network of nitrogen metabolism genes in the Ryukyu limestone aquifer

While microbial biogeochemical activities such as those involving denitrification and sulfate reduction have been considered to play important roles in material cycling in various aquatic ecosystems, our current understanding of the microbial community in groundwater ecosystems is remarkably insufficient. To assess the groundwater in the Ryukyu limestone aquifer of Okinawa Island, which is located in the southernmost region of Japan, we performed metagenomic analysis on the microbial communities at the three sites and screened for functional genes associated with nitrogen metabolism. 16S rRNA amplicon analysis showed that bacteria accounted for 94-98% of the microbial communities, which included archaea at all three sites. The bacterial communities associated with nitrogen metabolism shifted by month at each site, indicating that this metabolism was accomplished by the bacterial community as a whole. Interestingly, site 3 contained much higher levels of the denitrification genes such as narG and napA than the other two sites. This site was thought to have undergone denitrification that was driven by high quantities of dissolved organic carbon (DOC). In contrast, site 2 was characterized by a high nitrate-nitrogen (NO3-N) content and a low amount of DOC, and this site yielded a moderate amount of denitrification genes. Site 1 showed markedly low amounts of all nitrogen metabolism genes. Overall, nitrogen metabolism in the Ryukyu limestone aquifer was found to change based on environmental factors.

Responses of straw foam-based aerobic granular sludge to atrazine: Insights from metagenomics and microbial community variations

Atrazine (ATZ) has caused serious environmental pollution, but the biodegradation of ATZ is relatively slow and inefficient. Herein, a straw foam-based aerobic granular sludge (SF-AGS) was developed, the spatially ordered architectures of which could greatly improve the drug tolerance and biodegradation efficiency of ATZ. The results showed that, in the presence of ATZ, chemical oxygen demand (COD), ammonium nitrogen (NH₄⁺-N), total phosphorus (TP), and total nitrogen (TN) were effectively removed within 6 h, and the removal efficiencies were as high as 93.37%, 85.33%, 84.7%, and 70%, respectively. Furthermore, ATZ stimulated microbial consortia to secrete three times more extracellular polymers compared to without ATZ. Illumina MiSeq sequencing results showed that bacterial diversity and richness decreased, leading to significant changes in microbial population structure and composition. ATZ-resistant bacteria including Proteobacteria, Actinobacteria, and Burkholderia laid the biological basis for the stability of aerobic particles, efficient removal of pollutants, and degradation of ATZ. The study demonstrated that SF-AGS is feasible for ATZ-laden low-strength wastewater treatment.

Fluorescein diacetate hydrolytic activity as a sensitive tool to quantify nitrogen/sulfur gene content in urban river sediments in China

The relative abundance of functional genes used to quantify the abundance of functional genes in communities is controversial. Quantitative PCR (qPCR) technology offers a powerful tool for quantifying functional gene abundance. However, humic substances can inhibit qPCR in sediment/soil samples. Therefore, finding a convenient and effective quantitative analysis method for sediment/soil samples is necessary. The functional genes and physicochemical properties in sediments with different-level pollutions were analyzed in this study. Correlations between physicochemical properties and the relative abundance of functional genes were used to test whether relative abundance in gene prediction quantifies the abundance of functional genes. The abundance of functional genes could be corrected by multiplying the fluorescein diacetate (FDA) hydrolytic rates by the relative abundance of functional genes since the FDA assay has been widely used as a rapid and sensitive method for quantifying microbial activity in sediments. Redundancy analysis showed significant interrelations between the functional genes and the physicochemical properties of sediments. The relative abundance of functional genes is unreliable for quantifying the abundance of functional genes because of the weak correlation (R < 0.5, P < 0.05) between different pollutants and the relative abundance of functional genes. However, a significant positive correlation between concentrations of different pollutants and the activities of associated enzymes was obtained (R > 0.933, P < 0.05), which revealed that the abundance of functional genes could be reliably quantified by the relative abundance and FDA hydrolytic rate. This study proposed an alternative method besides qPCR to quantify the absolute abundance of functional genes, which overcomes the problem of humic interference in the quantitative analysis of sediment/soil samples.

Superior nitrogen removal and efficient sludge reduction via partial nitrification-anammox driven by addition of sludge fermentation products for real sewage treatment

Efficient retention and enrichment of anammox bacteria (AnAOB) are essential for the application of municipal wastewater anammox. Herein, an innovative process for highly enriching AnAOB within suspended carrier was developed in a single-stage anaerobic/oxic/anoxic reactor with 5.5 % carrier filling ratio for real sewage. Addition of sludge fermentation products promoted stable maintenance of partial nitrification (nitrite accumulation rate > 90.0 %) and achieved efficient external sludge reduction (27.6-37.9 %). Continuous nitrite supply and carrier addition promoted AnAOB enrichment (2.4 × 1011 gene copies/g dry sludge). Candidatus Brocadia was the predominant bacteria in carriers (18.6 %). The average effluents of total inorganic nitrogen (TIN) and NH4+-N were 1.9 and 0.8 mg/L with removal rates of 97.0 % and 98.7 %. In the anoxic stage, TIN removal rate reached 71.5 %, and the proportion of anammox to nitrogen removal accounted for 82.7 %. This study broadens the application of mainstream sewage anammox and the resource utilization of waste activated sludge.

Changes in the composition of bacterial communities and pathogen levels during wastewater treatment

Wastewater treatment plants have been described as a potential source of spreading pathogens to the receiving water. However, few studies are reporting the presence and concentration changes of pathogens in these matrices. High-throughput sequencing provides new insights into understanding the changes of bacterial communities throughout wastewater treatment plants (WWTPs). In this study, the changes in microbial community composition and the levels of representative pathogens of effluents during the wastewater treatment process in two municipal WWTPs (A and B) were analyzed using Illumina NovaSeq sequencing and qPCR. Proteobacteria was the most abundant phylum in all samples, accounting for 45.0-75.2% of the bacterial community, followed by Firmicutes, Bacteroidetes, Actinobacteria, and Nitrospirae. A slight difference was observed between the bacterial community compositions of WWTPs A and B. However, a significant difference in the community compositions of effluent samples at different treatment stages was observed. Nutrients had a more substantial impact on bacterial community composition than physicochemical factors. Most human-associated Bacteroides and Mycobacterium were eliminated during the wastewater treatment process in both WWTPs. The bacterial community richness in WWTP A was significantly higher than that in WWTP B. The results of this study will provide insights into the potential problems that exist in WWTPs. In turn, these insights can enable the efficient and stable operation of WWTPs and help prevent the spread of pathogens.

Deciphering the fate of antibiotic resistance genes in norfloxacin wastewater treated by a bio-electro-Fenton system

The misuse of antibiotics has increased the prevalence of antibiotic resistance genes (ARGs), considered a class of critical environmental contaminants due to their ubiquitous and persistent nature. Previous studies reported the potentiality of bio-electro-Fenton processes for antibiotic removal and ARGs control. However, the production and fate of ARGs in bio-electro-Fenton processes triggered by microbial fuel cells are rare. In this study, the norfloxacin (NFLX) average residual concentrations within two days were 2.02, 6.07 and 14.84 mg/L, and the average removal efficiency of NFLX was 79.8 %, 69.6 % and 62.9 % at the initial antibiotic concentrations of 10, 20 and 40 mg/L, respectively. The most prevalent resistance gene type in all processes was the fluoroquinolone antibiotic gene. Furthermore, Proteobacteria was the dominant ARG-carrying bacteria. Overall, this study can provide theoretical support for the efficient treatment of high antibiotics-contained wastewater by bio-electro-Fenton systems to better control ARGs from the perspective of ecological security.

Assessing the effect of SiO2 and TiO2 nanoparticles on granule stability and microbial community shift in aerobic granular sludge process

The widely used SiO₂ and TiO₂ nanoparticles (NPs) can accumulate in industrial wastewaters, thereby posing challenge to biological wastewater treatment processes. In this work, the performance of aerobic granular sludge (AGS) reactors fed with wastewater containing 50 mg L^-1 SiO₂ and TiO₂ NPs were investigated. The results showed that the granules could resist the NPs in wastewater (no disintegration of granules was observed). SiO₂ NPs had a negative effect on the settleability of granules, with the SVI₃₀ increased by 64.5% and protein secretion decreased by 29.9%. To the contrary, the settleability of granules was improved in the presence of TiO₂ NPs due to the increase of the protein secretion. Possibly because of the compact and layered structure of granules, in the presence of both types of NPs, no obvious reduction of the overall removal efficiency of organics was found, and nanoparticle-resistant strains were enriched. The overall nitrification and denitrification efficiencies were hardly affected by SiO₂ NPs while significantly inhibited by TiO₂ NPs. Some functional genera, such as Hyphomicrobium and Acidovorax, showed growth inhibition with TiO₂ NPs, which might be responsible for the reduction of nitrification and denitrification efficiencies.

The Performance and Mechanism of Sludge Reduction by the Bioaugmentation Approach

Simple Summary

Activated sludge-based wastewater treatment process is one of the most popular adopted systems in wastewater treatment plants around the world. Excess sludge is an inevitable byproduct of the process, and the enormous quantity has brought a significant burden on operational costs. Various physicochemical and biological methods have been developed. Biological-based methods are promising because of less chemical consumption and low operation cost comparing to physicochemical methods. Hence, the present study is aimed at searching for functional bacteria that could reduce sludge, enhance the performance of sludge reduction through optimization, and try to unveil the underlying mechanism during sludge reduction. A total of 19 strains that belong to Firmicutes, Proteobacteria, and Actinobacteria were successfully isolated and identified. Subsequently, the performance of sludge reduction by pure culture or mix-cultures was validated. In total, 21.2% and 13.9% of total suspended and volatile suspended solids were reduced within 48 h after optimization via response surface methodology. The three-dimensional excitation-emission matrix fluorescence spectrum and hydrolases test results revealed that the sludge reduction might be promoted by the strain mainly through hydrolysis via proteinase and amylase. The results obtained from the study could help us to find an effective and economical way to resolve the sludge issue.

Abstract

Millions of wastewater treatment plants (WWTPs) based on the activated sludge process have been established worldwide to help to purify wastewater. However, a vast amount of sludge is inevitably generated, and the cost of sludge disposal could reach over half of the total operation cost of a WWTP. Various sludge reduction techniques have been developed, including physicochemical, biological, and combinational methods. Micro-organisms that could reduce sludge by cryptic growth are vital to the biological approach. Currently, only limited functional bacteria have been isolated, and the lack of knowledge on the underlying mechanism hinders the technique development. Therefore, the present study is aimed at isolating sludge-reducing bacteria and optimizing the sludge reduction process through response surface methodology. Nineteen strains were obtained from sludge. The mix-cultures did not show a higher sludge reduction rate than the pure culture, which may be ascribed to the complicated interactions, such as competition and antagonistic effects. In total, 21.2% and 13.9% of total suspended and volatile suspended solids were reduced within 48 h after optimization. The three-dimensional excitation-emission matrix fluorescence spectrum and hydrolases test results revealed that the sludge reduction might be promoted by the strain mainly through hydrolysis via proteinase and amylase. The results obtained from the study demonstrate the potential of using micro-organisms for sludge reduction through cryptic growth.

Mechanism of Fe-C micro-electrolysis substrate to improve the performance of CW-MFC with different factors: Insights of microbes and metabolic function

Constructed wetland-microbial fuel cell (CW-MFC) is a novel technology for wastewater treatment with electrical generation. This work proposed a Fe-C micro-electrolysis substrate (Fe-C) with biomass modified ceramsite to enhance pollutants removal and electricity generation. The key influencing factors were revealed, and the COD, NH₄⁺-N, and TP removal efficiency was respectively increased by 10.2, 8.1 and 8.78% with 76% higher power output at optimal conditions (e.g. OLR 52.5 g/(m².d), HRT 48 h, and aeration rate 800 mL/min). Fe-C based substrates improved the microenvironments in CW-MFC, including dissolved oxygen (DO) and oxidation-reduction potential (ORP) lowering and electron transfer facilitation. These contributed to the enrichment of critical microorganisms and metabolic activities. The abundance of functional bacteria (i.e. Geobacter, Thauera and Dechloromonas) were evidently increased. Additionally, the energy metabolism and other functional genes encoding cytochrome c (ccoN), nitrite reductase (nirD) and phosphate transporter (pstA) were all stimulated.

The phylogeny, ecology and ecophysiology of the glycogen accumulating organism (GAO) Defluviicoccus in wastewater treatment plants

This comprehensive review looks critically what is known about members of the genus Defluviicoccus, an example of a glycogen accumulating organism (GAO), in wastewater treatment plants, but found also in other habitats. It considers the operating conditions thought to affect its performance in activated sludge plants designed to remove phosphorus microbiologically, including the still controversial view that it competes with the polyphosphate accumulating bacterium Ca. Accumulibacter for readily biodegradable substrates in the anaerobic zone receiving the influent raw sewage. It looks at its present phylogeny and what is known about it's physiology and biochemistry under the highly selective conditions of these plants, where the biomass is recycled continuously through alternative anaerobic (feed); aerobic (famine) conditions encountered there. The impact of whole genome sequence data, which have revealed considerable intra- and interclade genotypic diversity, on our understanding of its in situ behaviour is also addressed. Particular attention is paid to the problems in much of the literature data based on clone library and next generation DNA sequencing data, where Defluviicoccus identification is restricted to genus level only. Equally problematic, in many publications no attempt has been made to distinguish between Defluviicoccus and the other known GAO, especially Ca. Competibacter, which, as shown here, has a very different ecophysiology. The impact this has had and continues to have on our understanding of members of this genus is discussed, as is the present controversy over its taxonomy. It also suggests where research should be directed to answer some of the important research questions raised in this review.

Characterization of Microbial Communities in Wastewater Treatment Plants Containing Heavy Metals Located in Chemical Industrial Zones

Water pollution caused by heavy metals (HMs) poses a serious risk to human health and the environment and can increase the risk of diabetes, cancer, and hypertension in particular. In this study, two full-scale wastewater treatment plants (WWTPs) in industrial zones in southern China were selected to analyze the microbial community structure, diversity, similarity, and differentiation in the anoxic/oxic (AO) and anoxic/oxic membrane bioreactor (AO-MBR) units under the stress of HMs. High-throughput sequencing showed that microbial diversity and abundance were higher in the AO process than in the AO-MBR process. In the two WWTPs, the common dominant phyla were Proteobacteria and Bacteroidetes, while the common dominant genera were Gemmatimonadaceae, Anaerolineaceae, Saprospiraceae, and Terrimonas. Manganese (Mn) and zinc (Zn) positively correlated with Saccharimonadales, Nakamurella, Micrococcales, and Microtrichales, whereas copper (Cu) and iron (Fe) positively correlated with Longilinea and Ferruginibacter. Additionally, the relative abundances of Chloroflexi, Patescibacteria, and Firmicutes differed significantly (p < 0.05) between the two processes. These results may provide comprehensive outlooks on the characterization of microbial communities in WWTPs, which could also help to reduce the potential environmental risks of the effluent from WWTPs located in industrial zones.

Aeration strategy based on numerical modelling and the response mechanism of microbial communities under various operating conditions

Aeration system is the main energy consumer in a wastewater treatment process. In this paper, the Naive Bayes classification (NBC) algorithm and response surface method (RSM) were firstly used to establish a methodology to improve the aeration efficiency and estimate effluent quality. Lab-scale experiments were conducted to verify the model. The errors between experimental values and predicted values were 3.36, -0.67 and -3.78% at operating temperatures of 20, 30 and 35 °C, indicating the applicability. To further elucidate the biological mechanisms of the experimental results, the microbial community composition was investigated under various operating conditions, the results shows that aerobic heterotrophic bacteria (HET) activity and COD removal efficiency were promoted at 30 °C. AOB and NOB activity and NH₄⁺-N removal efficiency were promoted at 30-35 °C. These findings together suggest that operating temperature is crucial for activated sludge treatment, which should be considered when regulating DO content or aeration rate in practical application.

Novel micro-granular sludge process for highly efficient treatment of low-strength and low C/N ratio municipal wastewater

A novel high-concentration powder bio-carrier (HPB) process was developed for the high-load treatment of low-strength municipal wastewater with low carbon/nitrogen (C/N) ratio (∼3). The powder carrier facilitated the rapid micro-granulation of sludge within 20 days and the average particle size increased rapidly from 47 μm to 210 μm. Accordingly, the concentration of mixed liquid volatile suspended solids (MLVSS) increased from 1.8 g/L to 4.3 g/L, which enabled the HPB process to maintain a short hydraulic retention time (HRT) of 3.6 h. Correspondingly, the high volumetric load of 0.4-1.3 kg chemical oxygen demand (COD)/(m³∙d) and 0.12-0.24 kg total nitrogen (TN)/(m³∙d) could be achieved and twice higher than those of conventional activated sludge process, e.g., anaerobic/anoxic/oxic process. The carrier-induced sludge granulation also significantly optimized the microbial structure, and the high-throughput sequencing revealed the increasing abundances of denitrifying bacteria and anammox bacteria, which was consistent with the nitrogen removal efficiency rising from 44.6% to 77.4%. Accordingly, the enhanced nitrogen removal could be achieved with TN of effluent steadily below 5 mg/L. Especially, the mass balance analysis on carbon and nitrogen further indicated the advantage of newly developed HPB process in carbon source saving for nitrogen removal. All the results are believed to suggest a promising strategy for the highly efficient treatment of low-strength municipal wastewater.

Ecological Insights Into Community Interactions, Assembly Processes and Function in the Denitrifying Phosphorus Removal Activated Sludge Driven by Phosphorus Sources

The microbial characteristics in the wastewater treatment plants (WWTPs) strongly affect their optimal performance and functional stability. However, a cognitive gap remains regarding the characteristics of the microbial community driven by phosphorus sources, especially co-occurrence patterns and community assembly based on phylogenetic group. In this study, 59 denitrifying phosphorus removal (DPR) activated sludge samples were cultivated with phosphorus sources. The results suggested that homogeneous selection accounted for the largest proportion that ranged from 35.82 to 64.48%. Deterministic processes dominated in 12 microbial groups (bins): Candidatus_Accumulibacter and Pseudomonas in these bins belonged to phosphate-accumulating organisms (PAOs). Network analysis revealed that species interactions were intensive in cyclic nucleoside phosphate-influenced microbiota. Function prediction indicated that cyclic nucleoside phosphates increased the activity of enzymes related to denitrification and phosphorus metabolism and increased the α-diversity of microorganism but decreased the diversity of metabolic function. Based on these results, it was assumed that cyclic nucleoside phosphates, rather than inorganic phosphates, are the most available phosphorus source for majority microorganisms in DPR activated sludge. The study revealed the important role of phosphorus source in the construction and assembly of microbial communities and provided new insights about pollutant removal from WWTPs.

An effective strategy for in situ start-up of mainstream anammox process treating domestic sewage

The feasibility of in situ start-up of mainstream anammox process was investigated in three parallel sequencing batch biofilm reactors (SBBRs) inoculated with nitrification sludge, partial nitrification sludge, and denitrifying phosphorus removal sludge, respectively. The SBBRs were operated under alternate anaerobic/aerobic/anoxic pattern at ambient temperature (16.5-26.8 °C). The influent organic and nitrogen loading rates were increased stepwise. Anammox bacteria grew exponentially with relative abundance and overall bacterial activity increasing from 0 to 0.004% to 0.29-0.40% and 'not detected' to 6-7 mg N/L/h, respectively. Desirable nitrogen removal efficiency of about 86% was obtained in 3-4 months for the influent nitrogen of 40.5-73.6 mg N/L. Anammox was the primary nitrogen transformation pathway. For the anammox bacterial enrichment, biofilm, alternate anaerobic/aerobic/anoxic pattern, and limited aeration played important roles. Seed sludge with high ammonium oxidizing bacterial activity further promoted the start-up of anammox process. The in situ start-up strategy could promote the full-scale application of mainstream anammox.

Bacterial Community Structure and Dynamic Changes in Different Functional Areas of a Piggery Wastewater Treatment System

Chemicals of emerging concern (CEC) in pig farm breeding wastewater, such as antibiotics, will soon pose a serious threat to public health. It is therefore essential to consider improving the treatment efficiency of piggery wastewater in terms of microorganisms. In order to optimize the overall piggery wastewater treatment system from the perspective of the bacterial community structure and its response to environmental factors, five samples were randomly taken from each area of a piggery’s wastewater treatment system using a random sampling method. The bacterial communities’ composition and their correlation with wastewater quality were then analyzed using Illumina MiSeq high-throughput sequencing. The results showed that the bacterial community composition of each treatment unit was similar. However, differences in abundance were significant, and the bacterial community structure gradually changed with the process. Proteobacteria showed more adaptability to an anaerobic environment than Firmicutes, and the abundance of Tissierella in anaerobic zones was low. The abundance of Clostridial (39.02%) and Bacteroides (20.6%) in the inlet was significantly higher than it was in the aerobic zone and the anoxic zone (p < 0.05). Rhodocyclaceae is a key functional microbial group in a wastewater treatment system, and it is a dominant microbial group in activated sludge. Redundancy analysis (RDA) showed that chemical oxygen demand (COD) had the greatest impact on bacterial community structure. Total phosphorus (TP), total nitrogen (TN), PH and COD contents were significantly negatively correlated with Sphingobacteriia, Betaproteobacteria and Gammaproteobacteria, and significantly positively correlated with Bacteroidia and Clostridia. These results offer basic data and theoretical support for optimizing livestock wastewater treatment systems using bacterial community structures.

Microbiome degrading linear alkylbenzene sulfonate in activated sludge

As the most widely used anionic surfactant, linear alkylbenzene sulfonate (LAS) requires biological alkane degradation when it is treated using an activated sludge (AS) process in a wastewater treatment plant because of its structural carboxylic unavailability. As consumption of LAS is gradually increasing, LAS loading into the WWTP is accordingly increasing. However, fewer studies have examined the involvement of the AS microbial community in the LAS degradation. In this study, metagenomic approaches were used to define microbiomes involved in LAS degradation in AS, with a particular focus on ω-hydroxylation. The abundance and diversity of alkane-degrading genes were investigated, and these genes were integrated with reconstructed metagenome-assembled genomes (MAGs). Additionally, the association of functional genes and MAGs with respect to LAS degradation was investigated. The results showed that alkB and cytochrome P450 genes were only shared within specific MAGs. Unique sets of genes with diverse abundances were detected in each sample. The MAGs with the alkB and cytochrome P450 genes were strongly associated with the other MAGs and involved in positive commensal interactions. The findings provided significant insights into how the AS microbiomes, which have continuously treated anionic surfactants for decades, potentially metabolize LAS and interact with commensal bacteria.

Valorization of pulp and paper industry wastewater using sludge enriched with nitrogen-fixing bacteria

Nitrogen-fixing bacteria (NFB) can reduce nitrogen at ambient pressure and temperature. In this study, we treated effluent from a paper mill in sequencing batch reactors (SBRs) and monitored the abundance and activity of NFB with a view to producing a sludge that could work as a biofertilizer. Four reactors were inoculated with activated sludge enriched with NFB and fed with a high C/N waste (100:0.5) from a paper mill. Though the reactors were able to reduce the organic load of the wastewater by up to 89%, they did not have any nitrogen-fixing activity and showed a decrease in the putative number of NFB (quantified with qPCR). The most abundant species in the reactors treating high C/N paper mill wastewater was identified by Illumina MiSeq 16S rRNA gene amplicon sequencing as Methyloversatilis sp. (relative abundance of 4.4%). Nitrogen fixation was observed when the C/N ratio was increased by adding sucrose. We suspect that real-world biological nitrogen fixation (BNF) will only occur where there is a C/N ratio ≤100:0.07. Consequently, operators should actively avoid adding or allowing nitrogen in the waste streams if they wish to valorize their sludge and reduce running costs. PRACTITIONER POINTS: Efficient biological wastewater treatment of low nitrogen paper mill effluent was achieved without nutrient supplementation. The sludge was still capable of fixing nitrogen although this process was not observed in the wastewater treatment system. This high C/N wastewater treatment technology could be used with effluents from cassava flour, olive oil, wine and dairy industries.

Research on microbial structures, functions and metabolic pathways in an advanced denitrification system coupled with aerobic methane oxidation based on metagenomics

Methanotrophs can oxidize methane as the sole carbon and energy, and the resulting intermediate products can be simultaneously utilized by coexistent denitrifying bacteria to remove the nitrogen, which named Aerobic Methane Oxidation Coupled to Denitrification (AME-D). In this paper, an AME-D system was built in an improved denitrification bio-filter, to analyze the nitrogen removal efficiency and mechanism. The maximum TN removal rate reached 95.05%. As shown in Raman spectroscopy, in the effluent wave crests generated by the symmetric expansion and contraction of NO₃^- disappeared, and the distortion of olefin CH₂ and C-OH stretching of alcohols appeared. Metagenomics revealed Methylotenera and Methylobacter were the dominated methanotrophs. There was a completed methane and nitrogen metabolism pathway with the synergism of nxrAB, narGHI, nasAB, pmo-amoABC and mmo genes. Dissimilatory reduction pathway was the primary nitrate removal pathway. Moreover, Bradyrhizobium could participate in methane and nitrogen metabolism simultaneously.

Occurrence and fate of pharmaceuticals in effluent and sludge from a wastewater treatment plant in Brazil

A wide variety of pharmaceuticals are discharged in water courses on a daily basis due to their incomplete removal from effluent in treatment plants. The aim of the current study was to assess the occurrence, fate and removal of pharmaceuticals from effluent and sludge samples collected in the biggest sanitary sewer plant in Southern Brazil. In total, 13 pharmaceuticals were detected in the influent through UHPLC-MS/M - paracetamol and caffeine recorded the highest concentrations, 137.98 and 35.29 µg L^-1, respectively. The treated effluent presented 11 compounds. Antibiotics were the class recording the widest diversity; metronidazole showed the lowest concentration (0.023 µg L^-1) and sulfamethoxazole presented the highest concentration (1.374 µg L^-1) in influent samples. Seven pharmaceuticals were absorbed by the sludge; among them, one finds caffeine, ciprofloxacin and ofloxacin, which were quantified both in the effluent and in the sludge. On the other hand, doxycycline, fenbendazole, norfloxacin and tetracycline were only detected in sludge samples - their concentrations ranged from 0.026 to 5.034 mg kg^-1. Clindamycin, oxytetracycline, sulfathiazole and trimethoprim concentrations increased throughout the treatment. There were high paracetamol and caffeine removal rates (>97%), and it may have happened due to degradation, photodegradation or chemical reaction. Ciprofloxacin and ofloxacin removal rate exceeded 83% mainly due to their sorption by sludge. Finally, the mass balance analysis highlighted high pharmaceutical loads (511.466 g d^-1) discharged into recipient waterbodies. This outcome demands broadening the removal of these pharmaceuticals from sewage.

Effect of organic loading on phosphorus forms transformation and microbial community in continuous-flow A2/O process

A continuous-flow Anaerobic/Anoxic/Oxic (A²/O) system was operated at different organic concentrations to systematically investigate the effect on the nutrient removal, secretion characteristics of extracellular polymer, phosphorus forms transformation and changes in functional flora in this system. The results showed that high organic loading was more conducive to promote the secretion of extracellular polymeric substance (EPS), the increase of polysaccharide content was more obvious compared with protein, the impact of organic loading on the components of loosely bound EPS (LB-EPS) was higher than that of tight-bound EPS (TB-EPS). Phosphorus in sludge floc mainly existed in the form of inorganic phosphorus (IP), and IP mainly existed in the form of apatite inorganic phosphorus (AP). High organic load showed higher phosphorus storage in EPS, and the phosphorus content in EPS was positively correlated with the content of EPS. Non-apatite phosphorus (NAIP) content played an important role in the extracellular dephosphorization. The abundance of Nitrosomonas and Nitrospira responsible for nitrification decreased with the increase in organic loading. The group of denitrifiers was large, and Azospira was the most abundant genus among them. Dechloromonas, Acinetobacter, Povalibacter, Chryseolinea and Pirellula were the functional genera closely associated with phosphorus removal.

Biological treatments of mercury and nitrogen oxides in flue gas: biochemical foundations, technological potentials, and recent advances

Nitrogen oxides (NO_x) and mercury (Hg) are commonly found coexistent pollutants in combustion flue gas. Ever-increasing emission of atmospheric Hg and NO_x has caused considerable environmental risks. Traditional flue gas demercuration and denitration techniques have many socioeconomic, technological and environmental drawbacks. Biotechnologies can be a promising and prospective alternative strategy. This article discusses theoretical foundation (biochemistry and genomic basis) and technical potentials (Hg⁰ bio-oxidation coupled to denitrification) of bioremoval of Hg and NO_x in flue gas and summarized recent experimental and technological advances. Finally, several specific technical perspectives have been put forward to better guide future researches.

Insights into the microbial diversity and structure in a full-scale municipal wastewater treatment plant with particular regard to Archaea

Due to limited description of the role and diversity of archaea in WWTPs, the aim of the study was to analyze microbial community structures and diversities with particular regard to Archaea in the samples taken from different stages of the full-scale municipal wastewater treatment plant and effluent receiving water (upstream and downstream discharge point). Our study was focused on showing how the treatment processes influenced the Eubacteria and Archaea composition. Alpha and Beta diversity were used to evaluate the microbial diversity changes in the collected samples. Proteobacteria was the largest fraction ranging from 28% to 67% with 56% relative abundance across all samples. Archaea were present in all stages of WWTP ranged from 1 to 8%. Among the Archaea, two groups of methanogens, acetoclastic (Methanosarcina, Methanosaeta) and hydrogenotrophic methanogens (Methanospirillium, Methanoculleus, Methanobrevibacter) were dominant in the technological stages. The obtained results indicate that the treated wastewater did not significantly affect eubacterial and archaeal composition in receiving water. However, differences in richness, diversity and microbial composition of Eubacteria and Archaea between the wastewater samples taken from the primary and secondary treatment were observed.

Metagenomic insights into mixotrophic denitrification facilitated nitrogen removal in a full-scale A2/O wastewater treatment plant

Wastewater treatment plants (WWTPs) are important for pollutant removal from wastewater, elimination of point discharges of nutrients into the environment and water resource protection. The anaerobic/anoxic/oxic (A2/O) process is widely used in WWTPs for nitrogen removal, but the requirement for additional organics to ensure a suitable nitrogen removal efficiency makes this process costly and energy consuming. In this study, we report mixotrophic denitrification at a low COD (chemical oxygen demand)/TN (total nitrogen) ratio in a full-scale A2/O WWTP with relatively high sulfate in the inlet. Nitrogen and sulfur species analysis in different units of this A2/O WWTP showed that the internal sulfur cycle of sulfate reduction and reoxidation occurred and that the reduced sulfur species might contribute to denitrification. Microbial community analysis revealed that Thiobacillus, an autotrophic sulfur-oxidizing denitrifier, dominated the activated sludge bacterial community. Metagenomics data also supported the potential of sulfur-based denitrification when high levels of denitrification occurred, and sulfur oxidation and sulfate reduction genes coexisted in the activated sludge. Although most of the denitrification genes were affiliated with heterotrophic denitrifiers with high abundance, the narG and napA genes were mainly associated with autotrophic sulfur-oxidizing denitrifiers. The functional genes related to nitrogen removal were actively expressed even in the unit containing relatively highly reduced sulfur species, indicating that the mixotrophic denitrification process in A2/O could overcome not only a shortage of carbon sources but also the inhibition by reduced sulfur of nitrification and denitrification. Our results indicate that a mixotrophic denitrification process could be developed in full-scale WWTPs and reduce the requirement for additional carbon sources, which could endow WWTPs with more flexible and adaptable nitrogen removal.

Highly enriched anammox within anoxic biofilms by reducing suspended sludge biomass in a real-sewage A2/O process

This study proposes a novel strategy of stably enriching anammox in mainstream, based on the competitive difference to NO₂^- between anoxic biofilms and suspended sludge. A modified anaerobic-anoxic-oxic (A²/O) process run for 500 days with actual municipal wastewater. Microbial analysis revealed that anoxic-carrier biofilms had a significantly higher abundance of anammox (qPCR: 0.74% - 4.34%) than suspended sludge (P< 0.001). Batch tests showed that anammox within anoxic-carrier biofilms contributed to significant nitrogen removal, coupled with partial-denitrification (NO₃^- → NO₂^-). The anammox genus, Ca. Brocadia, was highly enriched when suspended sludge was accidentally lost. Further batch tests found that reducing suspended biomass helped anammox enrichment in anoxic-carrier biofilms, because the suspended sludge had strong NO₂^- competition (NO₂^- → N₂) with anammox (increased nirK). Metagenomic sequencing revealed that Ca. Brocadia dominates in the anoxic-carrier biofilms, and is the most important narG contributor to NO₃^- → NO₂^-, which could have promoted the competition of NO₂^- with heterotrophic bacteria. For this A²/O process, the low effluent total nitrogen (8.9 mg ± 1.0 mg N/L) was attributed to partial-denitrification coupling with anammox, demonstrating that this process is applicable to the general influent N-concentration range (30 mg - 50 mg NH₄⁺-N/L) of municipal wastewater treatment plants (WWTPs). Based on the special competitive preference of anammox for NO₂^-, this study provides a promising and practical alternative for enriching anammox bacteria in municipal WWTPs.

Enrichment and retention of key functional bacteria of partial denitrification-Anammox (PD/A) process via cell immobilization: A novel strategy for fast PD/A application

Cell immobilization was used to enrich and retain functional bacteria within partial denitrification-Anammox (PD/A) process to achieve its fast start-up for the first time. To do so, residue sludge and Anammox sludge were immobilized in poly (vinyl alcohol)/sodium alginate (PVA/SA) gel for PD cultivation and Anammox bacteria inoculation, respectively. Stable PD with NO₃^--N to NO₂^--N transformation ratio (NTR) of 72.0% was achieved within 13 days at 25 °C and successfully combined with Anammox on 14th day. The hydrous porous PVA/SA gel matrix played the role of extracellular polymeric substance (EPS) and thus protected the microbes against low temperature. Satisfactory nitrogen removal rate (NRR) (301.6 ± 6.1 g N/(m³·d)) was achieved even when temperature decreased to 13 °C. The contribution of nitrogen removal via Anammox was as high as 77.10%. Abundance of Thauera and Candidatus Kuenenia increased from 0.9% and 1.1% to 30.6% and 2.1%, respectively.

Biological Reduction of Nitric Oxide for Efficient Recovery of Nitrous Oxide as an Energy Source

Chemical absorption-biological reduction based on Fe(II)EDTA is a promising technology to remove nitric oxide (NO) from flue gases. However, limited effort has been made to enable direct energy recovery from NO through production of nitrous oxide (N₂O) as a potential renewable energy rather than greenhouse gas. In this work, the enhanced energy recovery in the form of N₂O via biological NO reduction was investigated by conducting short-term and long-term experiments at different Fe(II)EDTA-NO and organic carbon levels. The results showed both NO reductase and N₂O reductase were inhibited at Fe(II)EDTA-NO concentration up to 20 mM, with the latter being inhibited more significantly, thus facilitating N₂O accumulation. Furthermore, N₂O accumulation was enhanced under carbon-limiting conditions because of electron competition during short-term experiments. Up to 47.5% of NO-N could be converted to gaseous N₂O-N, representing efficient N₂O recovery. Fe(II)EDTA-NO reduced microbial diversity and altered the community structure toward Fe(II)EDTA-NO-reducing bacteria-dominated culture during long-term experiments. The most abundant bacterial genus Pseudomonas, which was able to resist the toxicity of Fe(II)EDTA-NO, was significantly enriched, with its relative abundance increased from 1.0 to 70.3%, suggesting Pseudomonas could be the typical microbe for the energy recovery technology in NO-based denitrification.

Effect of influent ammonia nitrogen concentration on microbial community in MBBR reactor

The purpose of this study is to explore the nitrogen removal efficiency of the moving bed biofilm reactor (MBBR) under different ammonia nitrogen concentrations (states P1-P5), especially the composition of various forms of nitrogen, related genes and microbial community structure and succession law in the effluent of the reactor. The results show that the average efficiency of MBBR effluent denitrification is 63.63%. The concentration dynamics of NO₃^--N and NO₂^--N in the effluent indicated a relatively short-range nitrification and denitrification reaction in the MBBR. The results of 16SrDNA sequencing of P1-P5 microbial samples found that changes in the concentration of ammonia nitrogen in the influent produced significant changes in the composition of the microbial community in the MBBR. The genera Ottowia and Flavobacterium played an important role in the nitrogen removal of the MBBR system.

Microbial invasions in sludge anaerobic digesters

Among processes that control microbial community assembly, microbial invasion has received little attention until recently, especially in the field of anaerobic digestion. However, knowledge of the principles regulating the taxonomic and functional stability of microbial communities is key to truly develop better predictive models and effective management strategies for the anaerobic digestion process. To date, available studies focus on microbial invasions in digesters feed with activated sludge from municipal wastewater treatment plants. Herein, this review summarizes the importance of invasions for anaerobic digestion management, the ecological theories about microbial invasions, the traits of activated sludge microorganisms entering the digesters, and the resident communities of anaerobic reactors that are relevant for invasions and the current knowledge about the success and impacts of invasions, and discusses the research needs on this topic. The initial data indicate that the impact of invasions is low and only a small percentage of the mostly aerobic microorganisms present in the activated sludge feed are able to become stablished in the anaerobic digesters. However, there are still numerous unknowns about microbial invasions in anaerobic digestion including the influence of anaerobic feedstocks or process perturbances that new approaches on microbial ecology could unveil. KEY POINTS: • Microbial invasions are key processes to develop better strategies for digesters management. • Knowledge on pathogen invasions can improve anaerobic digestion microbial safety. • To date, the number of successful invasions on anaerobic digesters from activated sludge organisms is low. • Feed organisms detected in digesters are mostly inactive residual populations. • Need to expand the range of invaders and operational scenarios studied.

Assessing the impact of synthetic estrogen on the microbiome of aerated submerged fixed-film reactors simulating tertiary sewage treatment and isolation of estrogen-degrading consortium

17α-ethinylestradiol (EE2) is a synthetic estrogen that can cause harmful effects on animals, such as male feminization and infertility. However, the impact of the EE2 contamination on microbial communities and the potential role of bacterial strains as bioremediation agents are underexplored. The aim of this work was to evaluate the impact of EE2 on the microbial community dynamics of aerated submerged fixed-film reactors (ASFFR) simulating a polishing step downstream of a secondary sewage treatment. For this purpose, the reactors were fed with a synthetic medium with low COD content (around 50 mg l^-1), supplemented (reactor H) or not (reactor C) with 1 μg l^-1 of EE2. Sludge samples were periodically collected during the bioreactors operation to assess the bacterial profile over time by 16S rRNA gene amplicon sequencing or by bacterial isolation using culture-dependent approach. The results revealed that the most abundant phyla in both reactors were Proteobacteria and Bacteroidetes. At genus level, Chitinophagaceae, Nitrosomonas and Bdellovibrio predominated. Significant effects caused by EE2 treatment and bioreactors operating time were observed by non-metric multidimensional scaling. Therefore, even at low concentrations as 1 μg l^-1, EE2 is capable of influencing the bioreactor microbiome. Culture-dependent methods showed that six bacterial isolates, closely related to Pseudomonas and Acinetobacter genera, could grow on EE2 as the sole carbon source under aerobic conditions. These organisms may potentially be used for the assembly of an EE2-degrading bacterial consortium and further exploited for bioremediation applications, including tertiary sewage treatment to remove hormone-related compounds not metabolized in secondary depuration stages.

Characteristics of bacterial populations in an industrial scale petrochemical wastewater treatment plant: Composition, function and their association with environmental factors

The efficiency of petrochemical wastewater biological treatment is dependent upon complex bacterial communities. A well understanding of the structure and function of bacterial community and their association with environmental variables is essential for the elucidation of contaminant removal mechanisms and optimization of wastewater treatment processes. In this study, the bacterial communities and metabolic functions in the primary hydrolysis acidification unit (PHAU), cyclic activated sludge system (CASS), secondary hydrolysis acidification unit (SHAU), and biological aerated filter (BAF) of a petrochemical wastewater treatment plant (WWTP) were studied via Illumina high-throughput sequencing. The correlations between bacterial community and environmental variables were also investigated. The phylum Proteobacteria, Planctomycetes, Chloroflexi, Acidobacteria and Bacteroidetes were dominant in the petroleum WWTP. The bacterial communities varied with wastewater characteristics and operational parameters, as a result of the differences in biosystems functions. Phylogenetic analysis showed that the genes involved in the degradation of benzoate, nitrotoluene and aminobenzoate degradation were abundant in PHAU, and the genes related to the degradation of benzoate, aminobenzoate, chloroalkane, chloroalkene, caprolactam, naphthalene and toluene were abundant in CASS, SHAU and BAF. The Redundancy analysis (RDA) suggested that biochemical oxygen demand (BOD₅), NH₄⁺-N and total nitrogen concentrations exhibited significant impacts in shaping the structure of bacterial community. Variance partitioning analysis (VPA) showed that 18.6% of the community variance was related to wastewater characteristics, higher than operational parameters of 4.5%. These results provide insight into microbial community structure and metabolic function during petrochemical wastewater treatment, and discern the relationships between bacterial community and environmental variables, which can provide basic data and a theoretical analysis of the design and operation optimization in petrochemical WWTP.

Aerobic sludge granulation in shale gas flowback water treatment: Assessment of the bacterial community dynamics and modeling of bioreactor performance using artificial neural network

Flowback water from shale gas extraction is highly saline and comprises complex organic substances, thereby posing a significant challenge for the environmental management of the unconventional natural gas industry. In this work, an aerobic granular sludge (AGS) method was successfully used for the treatment of flowback water from shale gas extraction. The formed AGS had a diameter of 0.25-2.0 mm and the total sludge volume index was 23.40 mL g^-1. The AGS efficiently removed COD, NH₄⁺-N and TN by 70.1%, 92.1%, and 59.2%, respectively. The bacterial communities responsible for the removal of nitrogen and degradation of organics were enriched in AGS. The dynamics of contaminant removal was further explained with a three-layered artificial neural network model. The results showed that the initial concentration of COD, TDS, NH₄⁺-N and TN governed the contaminants' removal. As for operating parameters, aerating time showed a strong effect on NH₄⁺-N and TN removal, whereas settling time impacted the COD removal.

Disentangling Community Structure of Ecological System in Activated Sludge: Core Communities, Functionality, and Functional Redundancy

The microbial ecosystems of the sludge were characterized in terms of the core community structure, functional pathways, and functional redundancy through Illumina MiSeq sequencing and PICRUSt analysis on the activated sludge (AS) samples from an extended activated aeration process. Based on the identified OTU distribution, we identified 125 core community genera, including 3 abundant core genera and 21 intermittent abundant core genera. Putative genera Nitrosomonas, Nitrotoga, Zoogloea, Novosphingobium, Thermomonas, Amaricoccus, Tetrasphaera, Candidatus Microthrix, and Haliscomenobacter, which are associated with functions of nitrifying, denitrifying, phosphorus accumulating, and bulking and foaming, were found to present as the core community organisms in the AS sampled from the conventional extended aeration AS processes. The high-abundant nitrogen metabolic pathways were associated with nitrate reduction to ammonium (DNRA and ANRA), denitrification, and nitrogen fixation, while the ammonia oxidation-related genes (amo) were rarely annotated in the AS samples. Strict functional redundancy was not found with the AS ecosystem as it showed a high correlation between the community composition similarity and function similarity. In addition, the classified dominant core genera community was found to be sufficient to characterize the functionality of AS, which could invigorate applications of 16S rDNA MiSeq sequencing and PICRUSt for the prediction of functions of AS ecosystems.

Novel insight into the formation mechanism of volatile flavor in Chinese fish sauce (Yu-lu) based on molecular sensory and metagenomics analyses

Complex microbial metabolism is the basis for flavor formation in traditional fish sauce. To guide the targeted regulation of production quality, we used molecular sensory and metagenomics analyses to determine dynamic changes in volatile flavor compounds and microbial communities of fish sauce as fermentation progressed. In total, 56 volatile compounds were identified; of these, 3-methylthiopropanal had the highest average odor activity value. Twelve volatile compounds, key for fish sauce flavor development, were identified. Bidirectional orthogonal partial least squares analysis was applied to investigate the correlation between microorganisms and flavor substances. Five microbial genera including Halanaerobium, Halomonas, Tetragenococcus, Halococcus and Candidatus Frackibacter constituted the core microbial flora responsible for flavor formation. The microbial metabolic pathways degraded raw materials into primary metabolites, such as glucose, amino acids, and fatty acids. This study provides novel insights into the flavor formation mechanism of traditional fish sauce fermentation.

Enrichment of Nitrogen-Fixing Bacteria in a Nitrogen-Deficient Wastewater Treatment System

Anthropogenic nitrogen fixation is essential to sustain a global population of 7.7 billion. However, there has been a long-standing desire to find cheaper and more environmentally friendly alternatives to the Haber-Bosch process. In this study, we developed a new strategy of nitrogen fixation by enriching free-living N₂-fixing bacteria (NFB) in reactors fed with low nitrogen wastewater, analogous to those usually found in certain industrial effluents such as paper mills. Our reactors fixed appreciable quantities of nitrogen with a rate of 11.8 mg N L^-1 day^-1. This rate is comparable to recent "breakthrough" nitrogen-fixing technologies and far higher than observed in low C/N reactors (fed with organic matter and nitrogen). NFB were quantified using quantitative polymerase chain reaction (qPCR) of the nifH (marker gene used to identify biological nitrogen fixation) and 16S rRNA genes. The nifH gene was enriched by a factor of 10 in the nitrogen-fixing reactors (compared to controls) attaining 13% of the bacterial population (1:4.2 copies of nifH to 16S rRNA). The Illumina MiSeq 16S rRNA gene amplicon sequencing of reactors showed that the microbial community was dominated (19%) by Clostridium pasteurianum. We envisage that nitrogen-enriched biomass could potentially be used as a biofertilizer and that the treated wastewater could be released to the environment with very little post-treatment.

An improved start-up strategy for mainstream anammox process through inoculating ordinary nitrification sludge and a small amount of anammox sludge

The difficulties in enriching anammox bacteria and maintaining stable partial nitrification during start-up phase limit the application of mainstream anammox process. In this study, the feasibility of starting up simultaneous partial nitrification, anammox and denitrification (SNAD) reactor treating municipal wastewater by inoculating ordinary nitrification sludge (96.2%) and a small amount of anammox sludge (3.8%) was investigated. A sequencing batch reactor with intermittent aeration was used for the SNAD process. The SNAD reactor was started up in 75 days with a nitrogen removal efficiency of 85.4% at ambient temperature. The nitrogen removal performance maintained stable despite the fluctuating inflow. Anammox bacterial activity exponentially increased although nitrite oxidizing bacteria (NOB) activity in seeding sludge was high. The enhanced ammonium oxidizing bacterial activity and partial denitrification provided sufficient nitrite for anammox bacteria. Moreover, NOB was inhibited by intermittent aeration, anammox bacteria had competitive advantage on nitrite. The improved particle size and settleability of activated sludge also favored the anammox bacterial enrichment. This study provided an improved and easily-implemented start-up strategy for mainstream anammox. The seeding sludge was easily obtained and the operation strategy was simple. These findings were meaningful to the engineering application of mainstream anammox.

A biophysiological perspective on enhanced nitrate removal from decentralized domestic sewage using gravitational-flow multi-soil-layering systems

Multi-soil-layering (MSL) system with brick-wall pattern structure and gravitational flow can be used for decentralized rural domestic sewage treatment. The capability of soil for contaminant removal is maximized within soil mixture blocks (SMBs). However, the performance of removing nitrate was still not ideal during operation. To improve its performance in MSL system, the relationship between biophysiological characteristics of denitrifying species and operating conditions was studied. Microbial species diversity of activated sludge and soil samples were analyzed. The significant effects of independent factors and their interactions on microbial species diversity and denitrifying species abundance were revealed on the basis of factorial analysis. The results indicated activated sludge in SMBs played a key role in increasing the richness of denitrifying species in MSL system. Slow-release poly (butylene succinate) (PBS) had the most dominant positive effect on increasing denitrifying species abundance. Submersion had significantly positive effect on species richness in SMBs. These three factors, including activated sludge, PBS in SMBs, and submersion condition had different significant effects on microbial responses. They were favorable for denitrification and ensuring a better removal efficiency of nitrate and total nitrogen. The porous zeolites were served as the habitats for most of aerobic bacteria to form biofilms, which could promote the oxygen consumption in both sewage and system to improve denitrification in SMBs. The results could help on the enhancement of denitrification in MSL system from biophysiological insights. It can provide a sound strategy for using MSL system with great performance on contaminant removal.

Metagenomic Insights into the Effects of Seasonal Temperature Variation on the Activities of Activated Sludge

It is well acknowledged that the activities of activated sludge (AS) are influenced by seasonal temperature variation. However, the underlying mechanisms remain largely unknown. Here, the activities of activated sludge under three simulated temperature variation trends were compared in lab-scale. The TN, HN3-H, and COD removal activities of activated sludge were improved as temperature elevated from 20 °C to 35 °C. While, the TN, HN3-H, COD and total phosphorus removal activities of activated sludge were inhibited as temperature declined from 20 °C to 5 °C. Both the extracellular polymer substances (EPS) composition (e.g., total amount, PS, PN and DNA) and sludge index of activated sludge were altered by simulated seasonal temperature variation. The variation of microbial community structures and the functional potentials of activated sludge were further explored by metagenomics. Proteobacteria, Actinobacteria, Acidobacteria and Bacteroidetes were the dominant phyla for each activated sludge sample under different temperatures. However, the predominant genera of activated sludge were significantly modulated by simulated temperature variation. The functional genes encoding enzymes for nitrogen metabolism in microorganisms were analyzed. The enzyme genes related to ammonification had the highest abundance despite the changing temperature, especially for gene encoding glutamine synthetase. With the temperature raising from 20 °C to 35 °C. The abundance of amoCAB genes encoding ammonia monooxygenase (EC:1.14.99.39) increased by 305.8%. Meanwhile, all the enzyme genes associate with denitrification were reduced. As the temperature declined from 20 °C to 5 °C, the abundance of enzyme genes related to nitrogen metabolism were raised except for carbamate kinase (EC:2.7.2.2), glutamate dehydrogenase (EC:1.4.1.3), glutamine synthetase (EC:6.3.1.2). Metagenomic data indicate that succession of the dominant genera in microbial community structure is, to some extent, beneficial to maintain the functional stability of activated sludge under the temperature variation within a certain temperature range. This study provides novel insights into the effects of seasonal temperature variation on the activities of activated sludge.

Application of a novel molecular technique to characterise the effect of settling on microbial community composition of activated sludge

Activated sludge (AS) and return activated sludge (RAS) microbial communities from three full-scale municipal wastewater treatment plants (denoted plant A, B and C) were compared to assess the impact of sludge settling (i.e. gravity thickening in the clarifier) and profile microorganisms responsible for nutrient removal and reactor foaming. The results show that all three plants were dominated with microbes in the phyla of Proteobacteria, Bacteroidetes, Verrucomicrobia, Actinobacteria, Chloroflexi, Firmicutes, Nitrospirae, Spirochaetae, Acidobacteria and Saccharibacteria. AS and RAS shared above 80% similarity in the microbial community composition, indicating that sludge thickening does not significantly alter the microbial composition. Autotrophic and heterotrophic nitrifiers were present in the AS. However, the abundance of autotrophic nitrifiers was significantly lower than that of the heterotrophic nitrifiers. Thus, ammonium removal at these plants was achieved mostly by heterotrophic nitrification. Microbes that can cause foaming were at 3.2% abundance, and this result is well corroborated with occasional aerobic biological reactor foaming. By contrast, these microbes were not abundant (<2.1%) at plant A and C, where aerobic biological reactor foaming has not been reported.

A new sulfidogenic oxic-settling anaerobic (SOSA) process: The effects of sulfur-cycle bioaugmentation on the operational performance, sludge properties and microbial communities

In-situ sludge reduction can be achieved by inserting an anaerobic side-stream reactor in the sludge return line of the conventional activated sludge (CAS) process. This modified oxic-settling-anaerobic (OSA) process can reduce sludge production by 30-50% through feast-fast alternating conditions. This paper proposes a new bioprocess called the sulfidogenic oxic-settling anaerobic (SOSA) process with OSA configuration and the addition of sulfate in side-stream reactor. The new bioprocess augments the conventional anaerobic/anoxic/aerobic feast-fast bioconversions with sulfur biochemical transformations (i.e. sulfate reduction and sulfur-oxidizing autotrophic denitrification). A lab-scale SOSA process was operated for 260 days in parallel with the anoxic/oxic (AO) CAS process and the conventional OSA process as control systems. Based on the experimental results, the feasibility of the new SOSA process was evaluated, and the effects of sulfur bioaugmentation on the effluent quality, sludge reduction, sludge physico-chemical properties and microbial communities were examined. The SOSA process i) removed 98% of the organics (chemical oxygen demand, COD) and 99% of the ammonia present with a lower observed sludge yield (0.204 g TSS/g COD_removed) than those of the OSA and AO processes (0.292 and 0.473 g TSS/g COD_removed respectively), ii) denitrified 18% and 6% more nitrogen to dinitrogen gas than did the CAS and OSA processes respectively, iii) produced sludge with improved settleability and dewaterability, iv) encouraged sludge decomposition with greater destruction of extracellular polymeric substances and v) enriched sulfur-cycle related and hydrolytic/fermentative bacteria. The possible mechanisms of sulfur augmentation and limitations of the present study are also discussed.

Quantify the contribution of anammox for enhanced nitrogen removal through metagenomic analysis and mass balance in an anoxic moving bed biofilm reactor

In this study, enhanced nitrogen removal through in situ enrichment of anammox bacteria was successfully obtained in a full-scale municipal wastewater treatment plant (WWTP). The WWTP was an anaerobic-anoxic-oxic (AAO) process and upgraded by adding moving carriers into the anoxic zone. Enhanced nitrogen removal was obtained during almost two years of operation. The significant nitrogen removal might be associated with the in situ enrichment of anammox bacteria on the adding carriers, as revealed by the comprehensive results of molecular analysis and ¹⁵N-stable isotope tracing tests. Quantitative PCR results indicated that anammox bacteria in the anoxic-carrier biofilms presented a higher abundance than flocculent sludge (16S rRNA: P < 0.005; HzsB: P < 0.042). The 16S rRNA amplicon sequencing showed significant differences in the phylum Planctomycetes (P < 0.001) between anoxic-carrier biofilms and flocculent sludge. And metagenomic sequencing analysis further revealed the anammox relative abundance in the anoxic-carrier biofilms was significantly higher than the reported level in the flocculent sludge of conventional WWTPs. In addition, ¹⁵N-stable isotope tracing tests showed that anammox could be combined with nitrate reduction by the anoxic-carrier biofilms. Thus, enriched anammox bacteria might contribute to nitrogen loss and lead to improvements in the nitrogen removal, which was also supported by the mass balance analysis of organic carbon, nitrogen, and phosphorus of the WWTP. Overall, this study suggests that anoxic-carrier biofilms might be a candidate to enhance nitrogen removal through partial anammox in municipal WWTPs.

Time Series Genome-Centric Analysis Unveils Bacterial Response to Operational Disturbance in Activated Sludge

Understanding ecosystem response to disturbances and identifying the most critical traits for the maintenance of ecosystem functioning are important goals for microbial community ecology. In this study, we used 16S rRNA amplicon sequencing and metagenomics to investigate the assembly of bacterial populations in a full-scale municipal activated sludge wastewater treatment plant over a period of 3 years, including a 9-month period of disturbance characterized by short-term plant shutdowns. Following the reconstruction of 173 metagenome-assembled genomes, we assessed the functional potential, the number of rRNA gene operons, and the in situ growth rate of microorganisms present throughout the time series. Operational disturbances caused a significant decrease in bacteria with a single copy of the rRNA (rrn) operon. Despite moderate differences in resource availability, replication rates were distributed uniformly throughout time, with no differences between disturbed and stable periods. We suggest that the length of the growth lag phase, rather than the growth rate, is the primary driver of selection under disturbed conditions. Thus, the system could maintain its function in the face of disturbance by recruiting bacteria with the capacity to rapidly resume growth under unsteady operating conditions.IMPORTANCE Disturbance is a key determinant of community assembly and dynamics in natural and engineered ecosystems. Microbiome response to disturbance is thought to be influenced by bacterial growth traits and life history strategies. In this time series observational study, the response to disturbance of microbial communities in a full-scale activated sludge wastewater treatment plant was assessed by computing specific cellular traits of genomes retrieved from metagenomes. It was found that the genomes observed in disturbed periods have more copies of the rRNA operon than genomes observed in stable periods, whereas the in situ mean relative growth rates of bacteria present during stable and disturbed periods were indistinguishable. From these intriguing observations, we infer that the length of the lag phase might be a growth trait that affects the microbial response to disturbance. Further exploration of this hypothesis could contribute to better understanding of the adaptive response of microbiomes to unsteady environmental conditions.