1
|
Suh SM, Kim HJ, Shin MK, Hong SJ, Cha JE, Kim HY. Multiplex PCR detection method of genetically modified canola event (MON94100, LBFLFK, and NS-B50027-4) combined with capillary electrophoresis. Food Sci Biotechnol 2024; 33:637-643. [PMID: 38274186 PMCID: PMC10805685 DOI: 10.1007/s10068-023-01377-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 05/18/2023] [Accepted: 06/15/2023] [Indexed: 01/27/2024] Open
Abstract
Genetically modified organisms (GMOs) have been continuously developed for their convenience and productivity. In the past three years, three new GM canola events (MON94100, LBFLFK, and NS-B50027-4) have been developed. To efficiently control these GM canola events, the detection methods were needed. Therefore, the multiplex PCR method combined with capillary electrophoresis was developed for three GM canola events. Ten GM canola, eighteen GM soybean, thirty-two GM maize, and ten non-GM crops were used to evaluate the specificity of the method. The detection limit of the multiplex PCR assay was determined to be 0.005 ng in the DNA mixture and 0.1% in the spiked sample. The aim of this study was to establish multiplex PCR coupled with capillary electrophoresis for the newly produced three GM canola events. The developed method is expected to contribute to monitor the commercially available GM canola events. Supplementary Information The online version contains supplementary material available at 10.1007/s10068-023-01377-z.
Collapse
Affiliation(s)
- Seung-Man Suh
- Institute of Life Sciences & Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin, 17104 Korea
| | - Hyun-Jae Kim
- Institute of Life Sciences & Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin, 17104 Korea
| | - Min-Ki Shin
- Novel Food Division, National Institute of Food and Drug Safety Evaluation, Cheongju, 28159 Korea
| | - Seung-Jin Hong
- Novel Food Division, National Institute of Food and Drug Safety Evaluation, Cheongju, 28159 Korea
| | - Jae-Eun Cha
- Institute of Life Sciences & Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin, 17104 Korea
| | - Hae-Yeong Kim
- Institute of Life Sciences & Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin, 17104 Korea
| |
Collapse
|
2
|
Development of an Efficient Dye-Based qPCR System Still Functional for Low Levels of Transgenic DNA in Food Products. FOOD ANAL METHOD 2022. [DOI: 10.1007/s12161-022-02408-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
|
3
|
Sarlak Z, Shojaee-Aliabadi S, Rezvani N, Hosseini H, Rouhi M, Dastafkan Z. Development and validation of TaqMan real-time PCR assays for quantification of chicken adulteration in hamburgers. J Food Compost Anal 2022. [DOI: 10.1016/j.jfca.2021.104302] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
4
|
Zhou E, Song N, Xiao Q, Farooq Z, Jia Z, Wen J, Dai C, Ma C, Tu J, Shen J, Fu T, Yi B. Construction of transgenic detection system of Brassica napus L. based on single nucleotide polymorphism chip. 3 Biotech 2022; 12:11. [PMID: 34966634 PMCID: PMC8655060 DOI: 10.1007/s13205-021-03062-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Accepted: 11/09/2021] [Indexed: 01/03/2023] Open
Abstract
Brassica napus L. is a vital oil crop in China. As auxiliary tools for rapeseed breeding, transgenic technologies play a considerable role in heterosis, variety improvement, and pest resistance. Research on transgenic detection technologies is of great significance for the introduction, supervision, and development of transgenic rapeseed in China. However, the transgenic detection methods currently in use are complex and time-consuming, with low output. A single nucleotide polymorphism (SNP) chip can effectively overcome such limitations. In the present study, we collected 40 transgenic elements and designed 291 probes. The probe sequences were submitted to Illumina Company, and the Infinium chip technology was used to prepare SNP chips. In the present Brassica napus transgenic detection experiment, 84 high-quality probes of 17 transgenic elements were preliminarily screened, and genotyping effect was optimised for the probe signal value. Ultimately, a transgenic detection system for B. napus was developed. The developed system has the advantages of simple operation, minimal technical errors, and stable detection outcomes. A transgenic detection sensitivity test revealed that the probe designed could accurately detect 1% of transgenic samples and had high detection sensitivity. In addition, in repeatability tests, the CaMV35S promoter coefficient of variation was approximately 3.58%. Therefore, the SNP chip had suitable repeatability in transgene detection. The SNP chip developed could be used to construct transgenic detection systems for B. napus. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s13205-021-03062-6.
Collapse
Affiliation(s)
- Enqiang Zhou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Nuan Song
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Qing Xiao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Zunaira Farooq
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Zhibo Jia
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Jing Wen
- National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Cheng Dai
- National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Chaozhi Ma
- National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Jinxing Tu
- National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Jinxiong Shen
- National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Tingdong Fu
- National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| | - Bin Yi
- National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University, Wuhan, 430000 China
| |
Collapse
|
5
|
Andrew CI, Paul CO, Opeolu OO. Detection of genetically modified DNA in processed maize and soybean products in Nigeria. ACTA ACUST UNITED AC 2018. [DOI: 10.5897/ajb2018.16479] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
|
6
|
A new construct specific real-time PCR method for screening GMO ingredients with gat-tpinII cassette in foods, feeds and seeds. Food Control 2018. [DOI: 10.1016/j.foodcont.2017.11.035] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
7
|
Song JY, Kim JH, Kim HY. Detection of unapproved genetically modified potatoes in Korea using multiplex polymerase chain reaction. Food Control 2017. [DOI: 10.1016/j.foodcont.2017.04.026] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
|
8
|
Grazina L, Plácido A, Costa J, Fernandes TJ, Oliveira MBP, Mafra I. Tracing two Roundup Ready™ soybean lines (GTS 40-3-2 and MON89788) in foods commercialised in Portugal. Food Control 2017. [DOI: 10.1016/j.foodcont.2016.10.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
9
|
|
10
|
Turkec A, Lucas SJ, Karlik E. Monitoring the prevalence of genetically modified (GM) soybean in Turkish food and feed products. Food Control 2016. [DOI: 10.1016/j.foodcont.2015.06.052] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
11
|
Tafvizi F, Hashemzadegan M. Specific identification of chicken and soybean fraud in premium burgers using multiplex-PCR method. JOURNAL OF FOOD SCIENCE AND TECHNOLOGY 2016; 53:816-23. [PMID: 26788003 PMCID: PMC4711401 DOI: 10.1007/s13197-015-1771-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 10/06/2014] [Accepted: 02/10/2015] [Indexed: 11/26/2022]
Abstract
The increased consumption of meat products, such as hamburger in large cities such as Tehran, has highlighted the importance of quality control for these products. Due to the escalating cost of red meat, and the difficulty of detecting adulteration in ground meat, the replacement of red meat with cheaper animal and plant proteins in these products is clearly possible. As a result, the aim of this study was to investigate the validity of labeling in premium hamburgers made of beef. In addition, the presence of soybean and chicken meat, which constitutes commercial fraud in premium hamburgers, was detected using a sensitive and quick multiplex-PCR method. In total, 10 specified brands of premium hamburgers purported to consist of beef were collected from markets in Tehran City, Iran. DNA was extracted from the premium hamburgers, then, simplex-PCR and multiplex-PCR fwere optimized using specific beef, chicken and soybean primers. The 118, 183, and 274 bp fragments, were amplified in all samples from soybean lectin, 12 s rRNA, and mitochondrial cytochrome b genes, respectively. The results indicated the addition of chicken meat and soybean in the premium hamburgers which were not indicated on their labels.
Collapse
Affiliation(s)
- Farzaneh Tafvizi
- />Department of Biology, Parand Branch, Islamic Azad University, Parand, Iran
| | - Masumeh Hashemzadegan
- />College of Agriculture & Natural Resource, Science and Research Branch, Islamic Azad University, Tehran, Iran
| |
Collapse
|
12
|
Multiplex PCR system to track authorized and unauthorized genetically modified soybean events in food and feed. Food Control 2015. [DOI: 10.1016/j.foodcont.2015.01.035] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
|
13
|
Datukishvili N, Kutateladze T, Gabriadze I, Bitskinashvili K, Vishnepolsky B. New multiplex PCR methods for rapid screening of genetically modified organisms in foods. Front Microbiol 2015; 6:757. [PMID: 26257724 PMCID: PMC4513241 DOI: 10.3389/fmicb.2015.00757] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2015] [Accepted: 07/10/2015] [Indexed: 12/15/2022] Open
Abstract
We present novel multiplex PCR methods for rapid and reliable screening of genetically modified organisms (GMOs). New designed PCR primers targeting four frequently used GMO specific sequences permitted identification of new DNA markers, in particular 141 bp fragment of cauliflower mosaic virus (CaMV) 35S promoter, 224 bp fragment of Agrobacterium tumefaciens nopaline synthase (NOS) terminator, 256 bp fragment of 5-enolppyruvylshikimate-phosphate synthase (epsps) gene and 258 bp fragment of Cry1Ab delta-endotoxin (cry1Ab) gene for GMO screening. The certified reference materials containing Roundup Ready soybean (RRS) and maize MON 810 were applied for the development and optimization of uniplex and multiplex PCR systems. Evaluation of amplification products by agarose gel electrophoresis using negative and positive controls confirmed high specificity and sensitivity at 0.1% GMO for both RRS and MON 810. The fourplex PCR was developed and optimized that allows simultaneous detection of three common transgenic elements, such as: CaMV 35S promoter, NOS terminator, epsps gene together with soybean-specific lectin gene. The triplex PCR developed enables simultaneous identification of transgenic elements, such as: 35S promoter and cry1Ab gene together with maize zein gene. The analysis of different processed foods demonstrated that multiplex PCR methods developed in this study are useful for accurate and fast screening of GM food products.
Collapse
Affiliation(s)
- Nelly Datukishvili
- Ivane Beritashvili Center of Experimental Biomedicine Tbilisi, Georgia ; Faculty of Natural Sciences and Engineering, Ilia State University Tbilisi, Georgia
| | | | - Inga Gabriadze
- Ivane Beritashvili Center of Experimental Biomedicine Tbilisi, Georgia
| | - Kakha Bitskinashvili
- Faculty of Natural Sciences and Engineering, Ilia State University Tbilisi, Georgia
| | | |
Collapse
|
14
|
Kim JH, Park SB, Hong Y, Kim HY. Detection of eight genetically modified canola events using two event-specific pentaplex PCR systems. Food Control 2015. [DOI: 10.1016/j.foodcont.2014.11.027] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
15
|
Jung SH, Jang H, Lim MC, Kim JH, Shin KS, Kim SM, Kim HY, Kim YR, Jeon TJ. Chromatic Biosensor for Detection of Phosphinothricin Acetyltransferase by Use of Polydiacetylene Vesicles Encapsulated within Automatically Generated Immunohydrogel Beads. Anal Chem 2015; 87:2072-8. [DOI: 10.1021/ac501795x] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
| | | | - Min-Cheol Lim
- Institute
of Life Science and Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin 446-701, Korea
| | - Jae-Hwan Kim
- Institute
of Life Science and Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin 446-701, Korea
| | - Kong-Sik Shin
- Biosafety
Division, National Academy of Agricultural Science, Rural Development Administration, Jeonju 560-500, Korea
| | | | - Hae-Yeong Kim
- Institute
of Life Science and Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin 446-701, Korea
| | - Young-Rok Kim
- Institute
of Life Science and Resources and Department of Food Science and Biotechnology, Kyung Hee University, Yongin 446-701, Korea
| | | |
Collapse
|
16
|
Ji G, Li G, Wu Y, Guo J, Yang D, Zhao J, Lai X, Zhang G, Xiu W. Rapid Visual Event-Specific Detection of Soybean DP-356043-5 by Loop-Mediated Isothermal Amplification (LAMP). FOOD SCIENCE AND TECHNOLOGY RESEARCH 2015. [DOI: 10.3136/fstr.21.517] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Guozhen Ji
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
- College of Plant Protection, Shenyang Agricultural University
| | - Gang Li
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
| | - Yuanfeng Wu
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
| | - Jiahui Guo
- College of Plant Protection, Henan Agricultural University
| | - Dianlin Yang
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
| | - Jianning Zhao
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
| | - Xin Lai
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
| | - Guilong Zhang
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
| | - Weiming Xiu
- Agro-Environmental Protection institute, Ministry of Agriculture; Tianjin Engineering Research Center of Agricultural Ecological & Environmental Remediation
- College of Plant Protection, Shenyang Agricultural University
- College of Plant Protection, Henan Agricultural University
| |
Collapse
|
17
|
Kim JH, Zhang D, Kim HY. Detection of sixteen genetically modified maize events in processed foods using four event-specific pentaplex PCR systems. Food Control 2014. [DOI: 10.1016/j.foodcont.2013.07.029] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
|
18
|
Shang Y, Zhu P, Xu W, Guo T, Tian W, Luo Y, Huang K. Single universal primer multiplex ligation-dependent probe amplification with sequencing gel electrophoresis analysis. Anal Biochem 2013; 443:243-8. [PMID: 24050969 DOI: 10.1016/j.ab.2013.09.012] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2013] [Revised: 09/06/2013] [Accepted: 09/09/2013] [Indexed: 10/26/2022]
Abstract
In this study, a novel single universal primer multiplex ligation-dependent probe amplification (SUP-MLPA) technique that uses only one universal primer to perform multiplex polymerase chain reaction (PCR) was developed. Two reversely complementary common sequences were designed on the 5' or 3' end of the ligation probes (LPs), which allowed the ligation products to be amplified through only a single universal primer (SUP). SUP-MLPA products were analyzed on sequencing gel electrophoresis with extraordinary resolution. This method avoided the high expenses associated with capillary electrophoresis, which was the commonly used detection instrument. In comparison with conventional multiplex PCR, which suffers from low sensitivity, nonspecificity, and amplification disparity, SUP-MLPA had higher specificity and sensitivity and a low detection limit of 0.1 ng for detecting single crop species when screening the presence of genetically modified crops. We also studied the effect of different lengths of stuffer sequences on the probes for the first time. Through comparing the results of quantitative PCR, the LPs with different stuffer sequences did not affect the ligation efficiency, which further increased the multiplicity of this assay. The improved SUP-MLPA and sequencing gel electrophoresis method will be useful for food and animal feed identification, bacterial detection, and verification of genetic modification status of crops.
Collapse
Affiliation(s)
- Ying Shang
- Laboratory of Food Safety, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China
| | | | | | | | | | | | | |
Collapse
|