Do high Arctic coastal food webs rely on a terrestrial carbon subsidy?

Allochthonous marsh subsidies enhances food web productivity in an estuary and its surrounding ecosystem mosaic

Terrestrial organic matter is believed to play an important role in promoting resilient estuarine food webs, but the inherent interconnectivity of estuarine systems often obscures the origins and importance of these terrestrial inputs. To determine the relative contributions of terrestrial (allochthonous) and aquatic (autochthonous) organic matter to the estuarine food web, we analyzed carbon, nitrogen, and sulfur stable isotopes from multiple trophic levels, environmental strata, and habitats throughout the estuarine habitat mosaic. We used a Bayesian stable isotope mixing model (SIMM) to parse out relationships among primary producers, invertebrates, and a pelagic and demersal fish species (juvenile Chinook salmon and sculpin, respectively). The study was carried out in the Nisqually River Delta (NRD), Washington, USA, a recently-restored, macrotidal estuary with a diverse habitat mosaic. Plant groupings of macroalgae, eelgrass, and tidal marsh plants served as the primary base components of the NRD food web. About 90% of demersal sculpin diets were comprised of benthic and pelagic crustaceans that were fed by autochthonous organic matter contributions from aquatic vegetation. Juvenile salmon, on the other hand, derived their energy from a mix of terrestrial, pelagic, and benthic prey, including insects, dipterans, and crustaceans. Consequently, allochthonous terrestrial contributions of organic matter were much greater for salmon, ranging between 26 and 43%. These findings demonstrate how connectivity among estuarine habitat types and environmental strata facilitates organic matter subsidies. This suggests that management actions that improve or restore lateral habitat connectivity as well as terrestrial-aquatic linkages may enhance allochthonous subsidies, promoting increased prey resources and ecosystem benefits in estuaries.

Seasonal riverine inputs may affect diet and mercury bioaccumulation in Arctic coastal zooplankton

Climate change driven increases in permafrost thaw and terrestrial runoff are expected to facilitate the mobilization and transport of mercury (Hg) from catchment soils to coastal areas in the Arctic, potentially increasing Hg exposure of marine food webs. The main aim of this study was to determine the impacts of seasonal riverine inputs on land-ocean Hg transport, zooplankton diet and Hg bioaccumulation in an Arctic estuary (Adventfjorden, Svalbard). The Adventelva River was a source of dissolved and particulate Hg to Adventfjorden, especially in June and July during the river's main discharge period. Stable isotope and fatty acid analyses suggest that zooplankton diet varied seasonally with diatoms dominating during the spring phytoplankton bloom in May and with increasing contributions of dinoflagellates in the summer months. In addition, there was evidence of increased terrestrial carbon utilization by zooplankton in June and July, when terrestrial particles contributed substantially to the particulate organic matter pool. Total (TotHg) and methyl Hg (MeHg) concentrations in zooplankton increased from April to August related to increased exposure to riverine inputs, and to shifts in zooplankton diet and community structure. Longer and warmer summer seasons will probably increase riverine runoff and thus Hg exposure to Arctic zooplankton.

Opportunistic consumption of marine pelagic, terrestrial, and chemosynthetic organic matter by macrofauna on the Arctic shelf: a stable isotope approach

Macrofauna can contribute substantially to the organic matter cycling on the seafloor, yet the role of terrestrial and chemosynthetic organic matter in the diets of microphagous (deposit and suspension) feeders is poorly understood. In the present study, we used stable isotopes of carbon and nitrogen to test the hypothesis that the terrestrial organic matter supplied with river runoff and local chemosynthetic production at methane seeps might be important organic matter sources for macrofaunal consumers on the Laptev Sea shelf. We sampled locations from three habitats with the presumed differences in organic matter supply: "Delta" with terrestrial inputs from the Lena River, "Background" on the northern part of the shelf with pelagic production as the main organic matter source, and "Seep" in the areas with detected methane seepage, where chemosynthetic production might be available. Macrobenthic communities inhabiting each of the habitats were characterized by a distinct isotopic niche, mostly in terms of δ¹³C values, directly reflecting differences in the origin of organic matter supply, while δ¹⁵N values mostly reflected the feeding group (surface deposit/suspension feeders, subsurface deposit feeders, and carnivores). We conclude that both terrestrial and chemosynthetic organic matter sources might be substitutes for pelagic primary production in the benthic food webs on the largely oligotrophic Laptev Sea shelf. Furthermore, species-specific differences in the isotopic niches of species belonging to the same feeding group are discussed, as well as the isotopic niches of the symbiotrophic tubeworm Oligobrachia sp. and the rissoid gastropod Frigidoalvania sp., which are exclusively associated with methane seeps.

Borealization of nearshore fishes on an interior Arctic shelf over multiple decades

Borealization is a type of community reorganization where Arctic specialists are replaced by species with more boreal distributions in response to climatic warming. The process of borealization is often exemplified by the northward range expansions and subsequent proliferation of boreal species on the Pacific and Atlantic inflow Arctic shelves (i.e., Bering/Chukchi and Barents seas, respectively). But the circumpolar nearshore distribution of Arctic-boreal fishes that predates recent warming suggests borealization is possible beyond inflow shelves. To examine this question, we revisited two nearshore lagoons in the eastern Alaska Beaufort Sea (Kaktovik and Jago lagoons, Arctic National Wildlife Refuge, Alaska, USA), a High Arctic interior shelf. We compared summer fish species assemblage, catch rate, and size distribution among three periods that spanned a 30-year record (baseline conditions, 1988-1991; moderate sea ice decline, 2003-2005; rapid sea ice decline, 2017-2019). Fish assemblages differed among periods in both lagoons, consistent with borealization. Among Arctic specialists, a clear decline in fourhorn sculpin (Myoxocephalus quadricornis, Kanayuq in Iñupiaq) occurred in both lagoons with 86%-90% lower catch rates compared with the baseline period. Among the Arctic-boreal species, a dramatic 18- to 19-fold increase in saffron cod (Eleginus gracilis, Uugaq) occurred in both lagoons. Fish size (length) distributions demonstrated increases in the proportion of larger fish for most species examined, consistent with increasing survival and addition of age-classes. These field data illustrate borealization of an Arctic nearshore fish community during a period of rapid warming. Our results agree with predictions that Arctic-boreal fishes (e.g., saffron cod) are well positioned to exploit the changing Arctic ecosystem. Another Arctic-boreal species, Dolly Varden (Salvelinus malma, Iqalukpik), appear to have already responded to warming by shifting from Arctic nearshore to shelf waters. More broadly, our findings suggest that areas of borealization could be widespread in the circumpolar nearshore.

Marine Pelagic Ecosystem Responses to Climate Variability and Change

The marine coastal region makes up just 10% of the total area of the global ocean but contributes nearly 20% of its total primary production and over 80% of fisheries landings. Unicellular phytoplankton dominate primary production. Climate variability has had impacts on various marine ecosystems, but most sites are just approaching the age at which ecological responses to longer term, unidirectional climate trends might be distinguished. All five marine pelagic sites in the US Long Term Ecological Research (LTER) network are experiencing warming trends in surface air temperature. The marine physical system is responding at all sites with increasing mixed layer temperatures and decreasing depth and with declining sea ice cover at the two polar sites. Their ecological responses are more varied. Some sites show multiple population or ecosystem changes, whereas, at others, changes have not been detected, either because more time is needed or because they are not being measured.

Seasonal pollutant levels in littoral high-Arctic amphipods in relation to food sources and terrestrial run-off

Increasing terrestrial run-off from melting glaciers and thawing permafrost to Arctic coastal areas is expected to facilitate re-mobilization of stored legacy persistent organic pollutants (POPs) and mercury (Hg), potentially increasing exposure to these contaminants for coastal benthic organisms. We quantified chlorinated POPs and Hg concentrations, lipid content and multiple dietary markers, in a littoral deposit-feeding amphipod Gammarus setosus and sediments during the melting period from April to August in Adventelva river estuary in Svalbard, a Norwegian Arctic Aarchipelago. There was an overall decrease in concentrations of ∑POPs from April to August (from 58 ± 23 to 13 ± 4 ng/g lipid weight; lw), Hg (from 5.6 ± 0.7 to 4.1 ± 0.5 ng/g dry weight; dw) and Methyl Hg (MeHg) (from 5 ± 1 to 0.8 ± 0.7 ng/g dw) in G. setosus. However, we observed a seasonal peak in penta- and hexachlorobenzene (PeCB and HCB) in May (2.44 ± 0.3 and 23.6 ± 1.7 ng/g lw). Sediment concentrations of POPs and Hg (dw) only partly correlated with the contaminant concentrations in G. setosus. Dietary markers, including fatty acids and carbon and nitrogen stable isotopes, indicated a diet of settled phytoplankton in May-July and a broader range of carbon sources after the spring bloom. Phytoplankton utilization and chlorobenzene concentrations in G. setosus exhibited similar seasonal patterns, suggesting a dietary uptake of chlorobenzenes that is delivered to the aquatic environment during spring snowmelt. The seasonal decrease in contaminant concentrations in G. setosus could be related to seasonal changes in dietary contaminant exposure and amphipod ecology. Furthermore, this decrease implies that terrestrial run-off is not a significant source of re-mobilized Hg and legacy POPs to littoral amphipods in the Adventelva river estuary during the melt season.

Semi-Automated Semantic Segmentation of Arctic Shorelines Using Very High-Resolution Airborne Imagery, Spectral Indices and Weakly Supervised Machine Learning Approaches

Precise coastal shoreline mapping is essential for monitoring changes in erosion rates, surface hydrology, and ecosystem structure and function. Monitoring water bodies in the Arctic National Wildlife Refuge (ANWR) is of high importance, especially considering the potential for oil and natural gas exploration in the region. In this work, we propose a modified variant of the Deep Neural Network based U-Net Architecture for the automated mapping of 4 Band Orthorectified NOAA Airborne Imagery using sparsely labeled training data and compare it to the performance of traditional Machine Learning (ML) based approaches—namely, random forest, xgboost—and spectral water indices—Normalized Difference Water Index (NDWI), and Normalized Difference Surface Water Index (NDSWI)—to support shoreline mapping of Arctic coastlines. We conclude that it is possible to modify the U-Net model to accept sparse labels as input and the results are comparable to other ML methods (an Intersection-over-Union (IoU) of 94.86% using U-Net vs. an IoU of 95.05% using the best performing method).

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Environmental Conditions of Arctic Lagoons

In contrast to temperate systems, Arctic lagoons that span the Alaska Beaufort Sea coast face extreme seasonality. Nine months of ice cover up to ∼1.7 m thick is followed by a spring thaw that introduces an enormous pulse of freshwater, nutrients, and organic matter into these lagoons over a relatively brief 2–3 week period. Prokaryotic communities link these subsidies to lagoon food webs through nutrient uptake, heterotrophic production, and other biogeochemical processes, but little is known about how the genomic capabilities of these communities respond to seasonal variability. Replicate water samples from two lagoons and one coastal site near Kaktovik, AK were collected in April (full ice cover), June (ice break up), and August (open water) to represent winter, spring, and summer, respectively. Samples were size fractionated to distinguish free-living and particle-attached microbial communities. Multivariate analysis of metagenomes indicated that seasonal variability in gene abundances was greater than variability between size fractions and sites, and that June differed significantly from the other months. Spring (June) gene abundances reflected the high input of watershed-sourced nutrients and organic matter via spring thaw, featuring indicator genes for denitrification possibly linked to greater organic carbon availability, and genes for processing phytoplankton-derived organic matter associated with spring blooms. Summer featured fewer indicator genes, but had increased abundances of anoxygenic photosynthesis genes, possibly associated with elevated light availability. Winter (April) gene abundances suggested low energy inputs and autotrophic bacterial metabolism, featuring indicator genes for chemoautotrophic carbon fixation, methane metabolism, and nitrification. Winter indicator genes for nitrification belonged to Thaumarchaeota and Nitrosomonadales, suggesting these organisms play an important role in oxidizing ammonium during the under-ice period. This study shows that high latitude estuarine microbial assemblages shift metabolic capabilities as they change phylogenetic composition between these extreme seasons, providing evidence that these communities may be resilient to large hydrological events in a rapidly changing Arctic.

Climate change and diminishing seasonality in Arctic benthic processes

The iconic picture of Arctic marine ecosystems shows an intense pulse of biological productivity around the spring bloom that is sustained while fresh organic matter (OM) is available, after which ecosystem activity declines to basal levels in autumn and winter. We investigated seasonality in benthic biogeochemical cycling at three stations in a high Arctic fjord that has recently lost much of its seasonal ice-cover. Unlike observations from other Arctic locations, we find little seasonality in sediment community respiration and bioturbation rates, although different sediment reworking modes varied through the year. Nutrient fluxes did vary, suggesting that, although OM was processed at similar rates, seasonality in its quality led to spring/summer peaks in inorganic nitrogen and silicate fluxes. These patterns correspond to published information on seasonality in vertical flux at the stations. Largely ice-free Kongsfjorden has a considerable detrital pool in soft sediments which sustain benthic communities over the year. Sources of this include macroalgae and terrestrial runoff. Climate change leading to less ice cover, higher light availability and expanded benthic habitat may lead to more detrital carbon in the system, dampening the quantitative importance of seasonal pulses of phytodetritus to seafloor communities in some areas of the Arctic. This article is part of the theme issue 'The changing Arctic Ocean: consequences for biological communities, biogeochemical processes and ecosystem functioning'.

Groundwater as a major source of dissolved organic matter to Arctic coastal waters

Groundwater is projected to become an increasing source of freshwater and nutrients to the Arctic Ocean as permafrost thaws, yet few studies have quantified groundwater inputs to Arctic coastal waters under contemporary conditions. New measurements along the Alaska Beaufort Sea coast show that dissolved organic carbon and nitrogen (DOC and DON) concentrations in supra-permafrost groundwater (SPGW) near the land-sea interface are up to two orders of magnitude higher than in rivers. This dissolved organic matter (DOM) is sourced from readily leachable organic matter in surface soils and deeper centuries-to millennia-old soils that extend into thawing permafrost. SPGW delivers approximately 400–2100 m³ of freshwater, 14–71 kg of DOC, and 1–4 kg of DON to the coastal ocean per km of shoreline per day during late summer. These substantial fluxes are expected to increase as massive stocks of frozen organic matter in permafrost are liberated in a warming Arctic.

In this study, the authors show that water flowing through thawed soils below the tundra surface (supra-permafrost groundwater) can be a major source of dissolved organic matter (DOM) to Arctic coastal waters during the summer. This DOM contains leachates from old soil carbon stocks, including potential contributions from thawing permafrost.

Characterization of sediment contaminants in Arctic lagoons and estuaries

Baseline characterizations of estuarine sediments in Chukchi and Beaufort Seas, were conducted. Concentrations of 194 organic and elemental chemicals were analyzed in sediment and fish, plus stable isotopes of carbon and nitrogen. The estuaries are shallow embayments, with little shoreline relief. The water columns were turbid, high salinity, and not stratified. Concentrations of arsenic and nickel were elevated throughout the region. Arsenic in fish tissue was elevated. Concentrations of PAHs were relatively high for pristine locations, but did not include petroleum hydrocarbons. Characteristics of PAHs indicate large contributions of terrestrial organic matter. With the exception of Peard Bay, all the estuaries reflected the strong influence of terrestrial plant input with low δ_o/oo values for carbon and nitrogen. Chlorinated pesticides and PCBs were uniformly low, but detectable in fish tissue. PCB and cyclodiene concentrations were half that seen in southeast Bristol Bay. Hexachlorobenzene was detected in all fish samples.

Strong Seasonality in Arctic Estuarine Microbial Food Webs

Microbial communities in the coastal Arctic Ocean experience extreme variability in organic matter and inorganic nutrients driven by seasonal shifts in sea ice extent and freshwater inputs. Lagoons border more than half of the Beaufort Sea coast and provide important habitats for migratory fish and seabirds; yet, little is known about the planktonic food webs supporting these higher trophic levels. To investigate seasonal changes in bacterial and protistan planktonic communities, amplicon sequences of 16S and 18S rRNA genes were generated from samples collected during periods of ice-cover (April), ice break-up (June), and open water (August) from shallow lagoons along the eastern Alaska Beaufort Sea coast from 2011 through 2013. Protist communities shifted from heterotrophic to photosynthetic taxa (mainly diatoms) during the winter–spring transition, and then back to a heterotroph-dominated summer community that included dinoflagellates and mixotrophic picophytoplankton such as Micromonas and Bathycoccus. Planktonic parasites belonging to Syndiniales were abundant under ice in winter at a time when allochthonous carbon inputs were low. Bacterial communities shifted from coastal marine taxa (Oceanospirillaceae, Alteromonadales) to estuarine taxa (Polaromonas, Bacteroidetes) during the winter-spring transition, and then to oligotrophic marine taxa (SAR86, SAR92) in summer. Chemolithoautotrophic taxa were abundant under ice, including iron-oxidizing Zetaproteobacteria. These results suggest that wintertime Arctic bacterial communities capitalize on the unique biogeochemical gradients that develop below ice near shore, potentially using chemoautotrophic metabolisms at a time when carbon inputs to the system are low. Co-occurrence networks constructed for each season showed that under-ice networks were dominated by relationships between parasitic protists and other microbial taxa, while spring networks were by far the largest and dominated by bacteria-bacteria co-occurrences. Summer networks were the smallest and least connected, suggesting a more detritus-based food web less reliant on interactions among microbial taxa. Eukaryotic and bacterial community compositions were significantly related to trends in concentrations of stable isotopes of particulate organic carbon and nitrogen, among other physiochemical variables such as dissolved oxygen, salinity, and temperature. This suggests the importance of sea ice cover and terrestrial carbon subsidies in contributing to seasonal trends in microbial communities in the coastal Beaufort Sea.

Sources of primary production to Arctic bivalves identified using amino acid stable carbon isotope fingerprinting. ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES 2019;55:366-384. [PMID: 31185743 DOI: 10.1080/10256016.2019.1620742]

Benthic invertebrates are a crucial trophic link in Arctic marine food webs. However, estimates of the contribution of different primary production sources sustaining these organisms are not well characterised. We measured the stable carbon isotope values (δ¹³C) of essential amino acids (EAAs) in muscle tissue from two common bivalve genera (Macoma spp. and Astarte spp.) collected in Hanna Shoal in the northeastern Chukchi Sea. Mixing models comparing the δ¹³C_EAA fingerprints of the bivalves to a suite of primary production endmembers revealed relatively high contributions of EAAs from phytoplankton and bacteria in both species. We also examined whether δ¹³C_EAA fingerprints could be produced from the EAAs preserved in bivalve shells, which could allow primary production sources to be estimated from ancient bivalve shells. The δ¹³C_EAA fingerprints from a suite of paired modern bivalve shells and muscle from Macoma calcarea from across the Chukchi Sea revealed a correspondence between the estimates of the dominant primary production source of EAAs derived from analyses of these two tissue types. Our findings indicate that δ¹³C_EAA fingerprinting of marine bivalves can be used to examine dominant organic matter sources in the Arctic marine benthos in recent years as well as in deeper time.