1
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Borisov AV, Snegerev MS, Colón-Rodríguez S, Fikiet MA, Lednev IK, Kistenev YV. Identification of semen traces at a crime scene through Raman spectroscopy and machine learning. Sci Rep 2024; 14:23070. [PMID: 39367107 PMCID: PMC11452376 DOI: 10.1038/s41598-024-73563-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2024] [Accepted: 09/18/2024] [Indexed: 10/06/2024] Open
Abstract
Biological fluid stains can be instrumental in solving crimes. Identification of semen can help reconstruct events in sexual assault cases and identify suspects via DNA profiling. Current methods for semen identification suffer from limitations, including destruction of the sample and potential false positives. One of the main unsolved issues is the elimination of underlying substrate interference. In this paper, chemometric approaches were developed to isolate and identify a biofluid stain on interfering substrates using Raman spectroscopy. The first approach, called Multivariate Curve Resolution with the Addition Method, combines the standard addition method with multivariate curve resolution. The second one uses a criterion based on reducing the spectrum complexity when a spectral component is removed from a Raman spectrum of a multi-component sample entirely. The results demonstrate the superiority of the first approach relative to the second for both small volume fraction of the fluid stain compared to the substrate and random noise.
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Affiliation(s)
- Alexey V Borisov
- Laboratory of Laser Molecular Imaging and Machine Learning (LM&ML), Tomsk State University, 36 Lenina Ave., Tomsk, 634050, Russian Federation
| | - Mikhail S Snegerev
- Laboratory of Laser Molecular Imaging and Machine Learning (LM&ML), Tomsk State University, 36 Lenina Ave., Tomsk, 634050, Russian Federation
| | | | - Marisia A Fikiet
- Henry C. Lee College, University of New Haven, 300 Boston Post Rd., West Haven, CT, 06516, USA
| | - Igor K Lednev
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA.
| | - Yury V Kistenev
- Laboratory of Laser Molecular Imaging and Machine Learning (LM&ML), Tomsk State University, 36 Lenina Ave., Tomsk, 634050, Russian Federation.
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2
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Logan N, Cao C, Freitag S, Haughey SA, Krska R, Elliott CT. Advancing Mycotoxin Detection in Food and Feed: Novel Insights from Surface-Enhanced Raman Spectroscopy (SERS). ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2309625. [PMID: 38224595 DOI: 10.1002/adma.202309625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/20/2023] [Indexed: 01/17/2024]
Abstract
The implementation of low-cost and rapid technologies for the on-site detection of mycotoxin-contaminated crops is a promising solution to address the growing concerns of the agri-food industry. Recently, there have been significant developments in surface-enhanced Raman spectroscopy (SERS) for the direct detection of mycotoxins in food and feed. This review provides an overview of the most recent advancements in the utilization of SERS through the successful fabrication of novel nanostructured materials. Various bottom-up and top-down approaches have demonstrated their potential in improving sensitivity, while many applications exploit the immobilization of recognition elements and molecular imprinted polymers (MIPs) to enhance specificity and reproducibility in complex matrices. Therefore, the design and fabrication of nanomaterials is of utmost importance and are presented herein. This paper uncovers that limited studies establish detection limits or conduct validation using naturally contaminated samples. One decade on, SERS is still lacking significant progress and there is a disconnect between the technology, the European regulatory limits, and the intended end-user. Ongoing challenges and potential solutions are discussed including nanofabrication, molecular binders, and data analytics. Recommendations to assay design, portability, and substrate stability are made to help improve the potential and feasibility of SERS for future on-site agri-food applications.
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Affiliation(s)
- Natasha Logan
- National Measurement Laboratory, Centre of Excellence in Agriculture and Food Integrity, Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
| | - Cuong Cao
- National Measurement Laboratory, Centre of Excellence in Agriculture and Food Integrity, Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
- Material and Advanced Technologies for Healthcare, Queen's University Belfast, 18-30 Malone Road, Belfast, BT9 5BN, UK
| | - Stephan Freitag
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences, Konrad-Lorenz-Str. 20, Tulln, 3430, Vienna, Austria
- FFoQSI GmbH - Austrian Competence Centre for Feed and Food Quality, Safety and Innovation, Technopark 1C, Tulln, 3430, Austria
| | - Simon A Haughey
- National Measurement Laboratory, Centre of Excellence in Agriculture and Food Integrity, Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
| | - Rudolf Krska
- National Measurement Laboratory, Centre of Excellence in Agriculture and Food Integrity, Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences, Konrad-Lorenz-Str. 20, Tulln, 3430, Vienna, Austria
- FFoQSI GmbH - Austrian Competence Centre for Feed and Food Quality, Safety and Innovation, Technopark 1C, Tulln, 3430, Austria
| | - Christopher T Elliott
- National Measurement Laboratory, Centre of Excellence in Agriculture and Food Integrity, Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
- School of Food Science and Technology, Faculty of Science and Technology, Thammasat University, 99 Mhu 18, Khong Luang, Pathum Thani, 12120, Thailand
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3
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Falardeau MS, Mireault C, Daoust B, Muehlethaler C. Chemical analysis of polymers used for 3D printing of firearms. Forensic Sci Int 2024; 357:111999. [PMID: 38518568 DOI: 10.1016/j.forsciint.2024.111999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 02/01/2024] [Accepted: 03/17/2024] [Indexed: 03/24/2024]
Abstract
3D-printed firearms cause challenges in criminal investigations and forensic analysis because they are difficult to trace. Indeed, in addition to being "ghost guns", they may not produce all the conventional ballistic traces normally used for firearm identification. However, 3D-printed firearms produce other very specific traces, such as polymer traces which come from the polymers used to print the firearm. To date, only a few studies have focused on the analysis of polymer traces. This study therefore aims to characterize polymer traces from 3D-printed firearms, using non-destructive spectroscopic techniques readily available in most forensic laboratories (i.e., FTIR and Raman) and evaluate the potential for association of polymer specimens or traces with their source. To do so, the study was divided into four parts. First, the population study conducted among 3D printing companies and individuals practicing 3D printing has revealed that PLA and PLA+ are the most widely used polymer types in Quebec, Canada. Second, FTIR and Raman spectroscopic analysis of polymer samples collected during the population study has allowed the development of a reference polymer spectral database. The analysis and interpretation of these spectra revealed that polymer filaments present very low intravariability, but very high intervariability, due in part to the different polymer types and the pigments used to color them. The use of chemometric tools with the spectra showed that these two spectroscopic methods were highly discriminating. Third, test firing of 3D-printed firearms has allowed for the simulation of a scene involving this type of firearm and the collection of polymer traces generated. Fourth, the comparison of chemical signatures between polymer filaments and polymer traces has allowed for the evaluation of the potential for chemical association. This study highlights the added value of chemical analysis of 3D-printed firearms polymer traces in a criminal investigation by demonstrating that polymer filaments, the polymer from which a 3D-printed firearm is made, as well as polymer traces generated during firing, can be linked chemically and provide relevant information.
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Affiliation(s)
- Mylène S Falardeau
- Laboratoire de Sciences Judiciaires et de Médecine Légale, Department of Ballistics, 1701 Parthenais Street, Montréal, Québec H2K 3S7, Canada; Université du Québec à Trois-Rivières, Department of Chemistry, Biochemistry and Physics, 3351 Des Forges Blvd., Trois-Rivières, Québec G9A 5H7, Canada; Université du Québec à Trois-Rivières, Groupe de Recherche en Science Forensique, 3351 Des Forges Blvd., Trois-Rivières, Québec G9A 5H7, Canada.
| | - Caroline Mireault
- Laboratoire de Sciences Judiciaires et de Médecine Légale, Department of Chemistry, 1701 Parthenais Street, Montréal, Québec H2K 3S7, Canada
| | - Benoit Daoust
- Université du Québec à Trois-Rivières, Department of Chemistry, Biochemistry and Physics, 3351 Des Forges Blvd., Trois-Rivières, Québec G9A 5H7, Canada; Université du Québec à Trois-Rivières, Groupe de Recherche en Science Forensique, 3351 Des Forges Blvd., Trois-Rivières, Québec G9A 5H7, Canada
| | - Cyril Muehlethaler
- Université du Québec à Trois-Rivières, Department of Chemistry, Biochemistry and Physics, 3351 Des Forges Blvd., Trois-Rivières, Québec G9A 5H7, Canada; Université du Québec à Trois-Rivières, Groupe de Recherche en Science Forensique, 3351 Des Forges Blvd., Trois-Rivières, Québec G9A 5H7, Canada; Centre International de Criminologie Comparée, PO Box 6128, Station Centre-ville, Montréal, Québec H3C 3J7, Canada
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4
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Zniber M, Vahdatiyekta P, Huynh TP. Analysis of urine using electronic tongue towards non-invasive cancer diagnosis. Biosens Bioelectron 2023; 219:114810. [PMID: 36272349 DOI: 10.1016/j.bios.2022.114810] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 04/27/2022] [Accepted: 10/11/2022] [Indexed: 11/06/2022]
Abstract
Electronic tongues (e-tongues) have been broadly employed in monitoring the quality of food, beverage, cosmetics, and pharmaceutical products, and in diagnosis of diseases, as the e-tongues can discriminate samples of high complexity, reduce interference of the matrix, offer rapid response. Compared to other analytical approaches using expensive and complex instrumentation as well as required sample preparation, the e-tongue is non-destructive, miniaturizable and on-site method with little or no preparation of samples. Even though e-tongues are successfully commercialized, their application in cancer diagnosis from urine samples is underestimated. In this review, we would like to highlight the various analytical techniques such as Raman spectroscopy, infrared spectroscopy, fluorescence spectroscopy, and electrochemical methods (potentiometry and voltammetry) used as e-tongues for urine analysis towards non-invasive cancer diagnosis. Besides, different machine learning approaches, for instance, supervised and unsupervised learning algorithms are introduced to analyze extracted chemical data. Finally, capabilities of e-tongues in distinguishing between patients diagnosed with cancer and healthy controls are highlighted.
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Affiliation(s)
- Mohammed Zniber
- Laboratory of Molecular Science and Engineering, Åbo Akademi University, 20500, Turku, Finland
| | - Parastoo Vahdatiyekta
- Laboratory of Molecular Science and Engineering, Åbo Akademi University, 20500, Turku, Finland
| | - Tan-Phat Huynh
- Laboratory of Molecular Science and Engineering, Åbo Akademi University, 20500, Turku, Finland.
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5
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Feng Wang Y, Bing Zhao Y, Wang X, Ting Liu Z. Exploration of coarse-to-fine FTIR feature extraction for handlebar grip materials: A common path for forensic examination of microtraces. Microchem J 2023. [DOI: 10.1016/j.microc.2023.108399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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6
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Burnier C, Monzò M, Sauzier G, Lewis SW. Negative results: Investigations into the quantification of silicone-based condom lubricants in solution by DRIFTS-FTIR. FORENSIC SCIENCE INTERNATIONAL: REPORTS 2022. [DOI: 10.1016/j.fsir.2022.100283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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7
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Huard L, Muehlethaler C. Recycled paints: Are they as variable as they seem? Forensic Sci Int 2022; 340:111476. [DOI: 10.1016/j.forsciint.2022.111476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 09/22/2022] [Accepted: 09/23/2022] [Indexed: 11/04/2022]
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8
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Rydzak PM, Elwick KE, Damaso N, Robertson JM. Assessment of detection limits for dyed and mounted textile fibers using Raman spectroscopy. J Forensic Sci 2022; 67:2278-2290. [PMID: 36076332 DOI: 10.1111/1556-4029.15125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 08/04/2022] [Accepted: 08/04/2022] [Indexed: 11/29/2022]
Abstract
Trace evidence in the form of textile fibers can be used to link objects and places during an investigation. Raman spectroscopy is a well-established technique that has been used for the examination of various pigments, paints, inks, and dyes. The objective of this study was to determine the capability of Raman spectroscopy to detect several different dye classes and colors on a variety of textile fibers. To test this, four categories of dyes, reactive, disperse, acid, and direct were examined with Raman microscopy while applied to one of five fiber types (cotton, polyester, nylon, wool, and rayon). Each dye category was tested using four colors, black, blue, red, and yellow, while at four concentrations of dye (w/w), 4% (black only), 1%, 0.5%, and 0.05% (blue, red, and yellow). Finally, each dye, fiber, color, and dye concentration combination were examined with Raman using one of two laser excitation sources (532 nm and 780 nm) while mounted in one of two mounting media, Permount™ and Entellan® new, as well as unmounted. Raman spectroscopy could detect some dyes at low concentrations (0.5% and 0.05%) even when mounted in mounting media and covered with a glass coverslip. Excitation source, dye category, dye concentration, fiber type, and mounting method all influence the ability to detect any given dye. These results support the continued study of Raman as a tool for the examination of fiber dyes as it has shown the potential to be effective even under constraints experienced by forensic examiners.
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Affiliation(s)
- Patrick M Rydzak
- Visiting Scientist Program, Federal Bureau of Investigation Laboratory Division, Research and Support Unit, Quantico, Virginia, USA
| | - Kyleen E Elwick
- Visiting Scientist Program, Federal Bureau of Investigation Laboratory Division, Research and Support Unit, Quantico, Virginia, USA
| | - Natalie Damaso
- Visiting Scientist Program, Federal Bureau of Investigation Laboratory Division, Research and Support Unit, Quantico, Virginia, USA
| | - James M Robertson
- Federal Bureau of Investigation Laboratory Division, Research and Support Unit, Quantico, Virginia, USA
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9
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Lebrun A, Fortin H, Fontaine N, Fillion D, Barbier O, Boudreau D. Pushing the Limits of Surface-Enhanced Raman Spectroscopy (SERS) with Deep Learning: Identification of Multiple Species with Closely Related Molecular Structures. APPLIED SPECTROSCOPY 2022; 76:609-619. [PMID: 35081756 PMCID: PMC9082968 DOI: 10.1177/00037028221077119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Accepted: 01/01/2022] [Indexed: 06/14/2023]
Abstract
Raman spectroscopy is a non-destructive and label-free molecular identification technique capable of producing highly specific spectra with various bands correlated to molecular structure. Moreover, the enhanced detection sensitivity offered by surface-enhanced Raman spectroscopy (SERS) allows analyzing mixtures of related chemical species in a relatively short measurement time. Combining SERS with deep learning algorithms allows in some cases to increase detection and classification capabilities even further. The present study evaluates the potential of applying deep learning algorithms to SERS spectroscopy to differentiate and classify different species of bile acids, a large family of molecules with low Raman cross sections and molecular structures that often differ by a single hydroxyl group. Moreover, the study of these molecules is of interest for the medical community since they have distinct pathological roles and are currently viewed as potential markers of gut microbiome imbalances. A convolutional neural network model was developed and used to classify SERS spectra from five bile acid species. The model succeeded in identifying the five analytes despite very similar molecular structures and was found to be reliable even at low analyte concentrations.
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Affiliation(s)
- Alexis Lebrun
- Departement of Chemistry, Université Laval, Québec, Canada
- Center for Optics, Photonics and Lasers (COPL), Université Laval, Québec, Canada
- Laboratoire de Pharmacologie Moléculaire, Axe Endocrinologie-Néphrologie, Centre de recherche du CHU de Québec, Université Laval, Quebec, Canada
| | - Hubert Fortin
- Departement of Chemistry, Université Laval, Québec, Canada
- Center for Optics, Photonics and Lasers (COPL), Université Laval, Québec, Canada
| | - Nicolas Fontaine
- Departement of Chemistry, Université Laval, Québec, Canada
- Center for Optics, Photonics and Lasers (COPL), Université Laval, Québec, Canada
| | - Daniel Fillion
- Departement of Chemistry, Université Laval, Québec, Canada
- Center for Optics, Photonics and Lasers (COPL), Université Laval, Québec, Canada
| | - Olivier Barbier
- Laboratoire de Pharmacologie Moléculaire, Axe Endocrinologie-Néphrologie, Centre de recherche du CHU de Québec, Université Laval, Quebec, Canada
| | - Denis Boudreau
- Departement of Chemistry, Université Laval, Québec, Canada
- Center for Optics, Photonics and Lasers (COPL), Université Laval, Québec, Canada
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10
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Sharma S, Garg D, Chophi R, Singh R. On the spectroscopic investigation of stamp inks using ATR-FTIR and chemometrics: Application in forensic document examination. Forensic Chem 2021. [DOI: 10.1016/j.forc.2021.100377] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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11
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Geng J, Zhang W, Chen C, Zhang H, Zhou A, Huang Y. Tracking the Differentiation Status of Human Neural Stem Cells through Label-Free Raman Spectroscopy and Machine Learning-Based Analysis. Anal Chem 2021; 93:10453-10461. [PMID: 34282890 DOI: 10.1021/acs.analchem.0c04941] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The ability to noninvasively monitor stem cells' differentiation is important to stem cell studies. Raman spectroscopy is a non-harmful imaging approach that acquires the cellular biochemical signatures. Herein, we report the first use of label-free Raman spectroscopy to characterize the gradual change during the differentiation process of live human neural stem cells (NSCs) in the in vitro cultures. Raman spectra of 600-1800 cm-1 were measured with human NSC cultures from the undifferentiated stage (NSC-predominant) to the highly differentiated one (neuron-predominant) and subsequently analyzed using various mathematical methods. Hierarchical cluster analysis distinguished two cell types (NSCs and neurons) through the spectra. The subsequently derived differentiation rate matched that measured by immunocytochemistry. The key spectral biomarkers were identified by time-dependent trend analysis and principal component analysis. Furthermore, through machine learning-based analysis, a set of eight spectral data points were found to be highly accurate in classifying cell types and predicting the differentiation rate. The predictive accuracy was the highest using the artificial neural network (ANN) and slightly lowered using the logistic regression model and linear discriminant analysis. In conclusion, label-free Raman spectroscopy with the aid of machine learning analysis can provide the noninvasive classification of cell types at the single-cell level and thus accurately track the human NSC differentiation. A set of eight spectral data points combined with the ANN method were found to be the most efficient and accurate. Establishing this non-harmful and efficient strategy will shed light on the in vivo and clinical studies of NSCs.
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Affiliation(s)
- Junnan Geng
- Department of Biological Engineering, Utah State University, 4105 Old Main Hill, ENGR 402, Logan, Utah 84322, United States
| | - Wei Zhang
- Department of Biological Engineering, Utah State University, 4105 Old Main Hill, ENGR 402, Logan, Utah 84322, United States
| | - Cheng Chen
- Department of Biological Engineering, Utah State University, 4105 Old Main Hill, ENGR 402, Logan, Utah 84322, United States
| | - Han Zhang
- Department of Biological Engineering, Utah State University, 4105 Old Main Hill, ENGR 402, Logan, Utah 84322, United States
| | - Anhong Zhou
- Department of Biological Engineering, Utah State University, 4105 Old Main Hill, ENGR 402, Logan, Utah 84322, United States
| | - Yu Huang
- Department of Biological Engineering, Utah State University, 4105 Old Main Hill, ENGR 402, Logan, Utah 84322, United States
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12
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Comparison between visual assessments and different variants of linear discriminant analysis to the classification of Raman patterns of inkjet printer inks. Forensic Chem 2021. [DOI: 10.1016/j.forc.2021.100336] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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13
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Burnier C, Coulson S, Massonnet G, Pitts K, Sauzier G, Lewis SW. A forensic international market survey of condom lubricants and personal hygiene products using ATR-FTIR coupled to chemometrics. Sci Justice 2021; 61:235-248. [PMID: 33985672 DOI: 10.1016/j.scijus.2021.01.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 01/20/2021] [Accepted: 01/31/2021] [Indexed: 02/07/2023]
Abstract
Condom residues may be encountered in forensic investigations as traces in sexual assault or rape cases. Casework studies have shown the value of distinguishing condom residues from other types of personal products used by women. However, up to now, there has been no investigation of their chemical variability within an international context. This work employed attenuated total reflectance Fourier transform infrared spectroscopy with chemometrics to provide objective characterisation of condom lubricants and personal hygiene products from the international market. 166 samples were obtained covering five major classes of products likely to be used by women. Principal component analysis distinguished most major classes based on their spectral profiles, with subsequent support vector machine models yielding discrimination accuracies over 90%. A two-step approach was subsequently developed and enabled both classification and a discrimination accuracy of 100%. This could provide greater confidence in chemical discrimination of residues from these products when conducting investigations and help assess the origin of the chemical profile obtained. Further testing using three validation sets produced an identification accuracy of 100% for generic classes, which may allow investigative leads to be more readily obtained from recovered evidence.
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Affiliation(s)
- Céline Burnier
- Ecole des Sciences Criminelles, University of Lausanne, Switzerland.
| | - Sally Coulson
- Institute of Environmental Science and Research Ltd, 120 Mt Albert Road, Sandringham, Auckland 1025, New Zealand
| | | | - Kari Pitts
- Forensic Science Laboratory, ChemCentre WA, Bentley, Australia
| | - Georgina Sauzier
- School of Molecular and Life Sciences, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia; Curtin Institute for Functional Molecules and Interfaces, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia
| | - Simon W Lewis
- School of Molecular and Life Sciences, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia; Curtin Institute for Functional Molecules and Interfaces, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia
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14
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Sauzier G, van Bronswijk W, Lewis SW. Chemometrics in forensic science: approaches and applications. Analyst 2021; 146:2415-2448. [PMID: 33729240 DOI: 10.1039/d1an00082a] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Forensic investigations are often reliant on physical evidence to reconstruct events surrounding a crime. However, there remains a need for more objective approaches to evidential interpretation, along with rigorously validated procedures for handling, storage and analysis. Chemometrics has been recognised as a powerful tool within forensic science for interpretation and optimisation of analytical procedures. However, careful consideration must be given to factors such as sampling, validation and underpinning study design. This tutorial review aims to provide an accessible overview of chemometric methods within the context of forensic science. The review begins with an overview of selected chemometric techniques, followed by a broad review of studies demonstrating the utility of chemometrics across various forensic disciplines. The tutorial review ends with the discussion of the challenges and emerging trends in this rapidly growing field.
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Affiliation(s)
- Georgina Sauzier
- School of Molecular and Life Sciences, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia.
| | - Wilhelm van Bronswijk
- School of Molecular and Life Sciences, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia.
| | - Simon W Lewis
- School of Molecular and Life Sciences, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia.
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15
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Chemometrics based ATR-FTIR spectroscopy method for rapid and non-destructive discrimination between eyeliner and mascara traces. Microchem J 2021. [DOI: 10.1016/j.microc.2021.106080] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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16
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Tiessen M, Stock NL, Stotesbury T. Untargeted SPME-GC-MS Characterization of VOCs Released from Spray Paint. J Chromatogr Sci 2021; 59:103-111. [PMID: 33147617 DOI: 10.1093/chromsci/bmaa082] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 09/03/2020] [Accepted: 09/26/2020] [Indexed: 02/02/2023]
Abstract
Paints are a common form of physical evidence encountered at crime scenes. This research presents an optimized method for the untargeted analysis of volatile organic compounds (VOCs) in spray paint using solid-phase microextraction-gas chromatography-mass spectrometry (SPME-GC-MS). The presence and persistence of VOCs were monitored in 30 minute intervals, over a 4 hour period, in a triplicate time study. As predicted, spray paint solvents are lost to the environment readily, whereas few VOCs remained present in the headspace in low concentrations beyond 4 hours. The VOCs that were observed to have the highest persistence in the headspace were aromatic compounds and those with longer hydrocarbon chains. We present this study in a forensic science context and suggest that the interpretation of the results may be useful for forensic applications in establishing a time since deposition of a spray-painted surface.
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Affiliation(s)
- Mitchell Tiessen
- Forensic Science Undergraduate Program, Trent University, 1600 West Bank Drive, Peterborough, ON K9L 0G2, Canada
| | - Naomi L Stock
- Water Quality Centre, Trent University, 1600 West Bank Drive, Peterborough, ON K9L 0G2, Canada
| | - Theresa Stotesbury
- Forensic Science Undergraduate Program, Trent University, 1600 West Bank Drive, Peterborough, ON K9L 0G2, Canada.,Faculty of Science, Forensic Science, Ontario Tech University, 2000 Simcoe Street N, Oshawa, ON L1G 0C5, Canada
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17
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Forensic discrimination of black laser prints by a combination of chemometric methods and μ-ATR-FTIR spectroscopy. CHEMICAL PAPERS 2020. [DOI: 10.1007/s11696-020-01145-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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18
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Quinn M, Brettell T, Joshi M, Bonetti J, Quarino L. Identifying PCP and four PCP analogs using the gold chloride microcrystalline test followed by raman microspectroscopy and chemometrics. Forensic Sci Int 2020; 307:110135. [DOI: 10.1016/j.forsciint.2019.110135] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 12/16/2019] [Accepted: 12/20/2019] [Indexed: 10/25/2022]
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Frescura LM, de Menezes BB, Duarte R, da Rosa MB. Application of multivariate analysis on naphthalene adsorption in aqueous solutions. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:3329-3337. [PMID: 31838706 DOI: 10.1007/s11356-019-07278-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Accepted: 12/03/2019] [Indexed: 06/10/2023]
Abstract
Naphthalene (NAP) is found as a pollutant in water, soil, and air, and adsorption is the most prominent removal process of this compound, among the methods studied. A study concerning the types of adsorbents and the parameters with the greatest influence on the adsorption process is interesting to direct future works on new adsorbents. The use of multivariate data analysis tools becomes an appealing way to compile data obtained from bibliographic reviews and to establish a behavior in NAP adsorption. This work aims to evaluate the parameters with greater influence on NAP adsorption process regarding adsorption capacity (qeexp) with the principal component analysis (PCA), and to group common NAP adsorbents by chemical characteristics through hierarchical cluster analysis (HCA). The variables qeexp, S, [NAP]0, T, CT, and [Ads] were used to perform PCA with correlation matrix. For the HCA, the variables S, [NAP]0, T, CT, and [Ads] with average linkage method (UPGMA) and Euclidean distance were used. Through PCA, it is possible to infer that S and [NAP]0 are the factors with greater influence in qeexp of NAP, while T, CT, and [Ads] have little correlation. PCA also shows that activated charcoal is the adsorbent with higher qeexp. HCA grouped the adsorbents into four groups by their chemical classes, except group A. Both PCA and HCA methods show themselves as potential tools to evaluate a data set of NAP adsorption processes.
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Affiliation(s)
- Lucas Mironuk Frescura
- Chemistry Department, Universidade Federal de Santa Maria - UFSM, Av Roraima, 1000, Santa Maria, RS, 97105-900, Brazil
| | - Bryan Brummelhaus de Menezes
- Chemistry Department, Universidade Federal de Santa Maria - UFSM, Av Roraima, 1000, Santa Maria, RS, 97105-900, Brazil
| | - Rafael Duarte
- Chemistry Department, Universidade Federal de Santa Maria - UFSM, Av Roraima, 1000, Santa Maria, RS, 97105-900, Brazil
| | - Marcelo Barcellos da Rosa
- Chemistry Department, Universidade Federal de Santa Maria - UFSM, Av Roraima, 1000, Santa Maria, RS, 97105-900, Brazil.
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Sharma S, Chophi R, Kaur H, Singh R. Differentiation of Cosmetic Foundation Creams Using Attenuated Total Reflection Fourier‐Transform Infrared Spectroscopy: A Rapid and NonDestructive Approach in Trace Evidence Analysis. J Forensic Sci 2019; 65:751-761. [DOI: 10.1111/1556-4029.14257] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 11/22/2019] [Accepted: 11/25/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Sweety Sharma
- Department of Forensic Science Punjabi University Patiala Punjab147002 India
| | - Rito Chophi
- Department of Forensic Science Punjabi University Patiala Punjab147002 India
| | - Harkamalpreet Kaur
- Department of Forensic Science Punjabi University Patiala Punjab147002 India
| | - Rajinder Singh
- Department of Forensic Science Punjabi University Patiala Punjab147002 India
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OPLS multivariate regression of FTIR-ATR spectra of acrylic paints for age estimation in contemporary artworks. Talanta 2019; 205:120114. [DOI: 10.1016/j.talanta.2019.120114] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 07/01/2019] [Accepted: 07/02/2019] [Indexed: 11/23/2022]
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Arnoult M, Dupuy C, Colas M, Cornette J, Duponchel L, Rossignol S. Determination of the Reactivity Degree of Various Alkaline Solutions: A Chemometric Investigation. APPLIED SPECTROSCOPY 2019; 73:1361-1369. [PMID: 31315423 DOI: 10.1177/0003702819867956] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Knowledge of alkaline silicate solutions is crucial in order to optimize geopolymer properties. Geopolymers are new binders resulting from the activation of an aluminosilicate by an alkaline solution. It is well established that the solution reactivity strongly affects the geopolymerization and therefore the geopolymer working properties. As a consequence, an evaluation of the reactivity degree of alkaline silicate solutions prior synthesis is of the utmost interest. However, the determination of the solution reactivity is currently tedious, and for geopolymer commercialization, it would be necessary to find an easy way to determine it. Therefore, Raman spectroscopy, combined with chemometric techniques, is proposed as a solution to easily determine the alkaline silicate solution reactivity. To conduct this investigation, 65 silicate solutions were characterized by Raman spectroscopy, and reference values of their reactivity degree were determined. Finally, principal component analysis and partial least squares regression were performed to build a statistical model able to predict the alkaline silicate solution reactivity from Raman spectra.
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Affiliation(s)
- Marie Arnoult
- Institut de Recherche sur les Céramiques, IRCER, Centre Européen de la Céramique, Limoges Cedex, France
| | - Colin Dupuy
- Institut de Recherche sur les Céramiques, IRCER, Centre Européen de la Céramique, Limoges Cedex, France
- Agence nationale pour la gestion des déchets radioactifs (ANDRA), Châteney Malabry Cedex, France
| | - Maggy Colas
- Institut de Recherche sur les Céramiques, IRCER, Centre Européen de la Céramique, Limoges Cedex, France
| | - Julie Cornette
- Institut de Recherche sur les Céramiques, IRCER, Centre Européen de la Céramique, Limoges Cedex, France
| | - Ludovic Duponchel
- Laboratoire de Spectrochimie Infrarouge et Raman (LASIR), Université de Lille, Villeneuve d'Ascq, France
| | - Sylvie Rossignol
- Institut de Recherche sur les Céramiques, IRCER, Centre Européen de la Céramique, Limoges Cedex, France
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Roberto de Alvarenga Junior B, Lajarim Carneiro R. Chemometrics Approaches in Forced Degradation Studies of Pharmaceutical Drugs. Molecules 2019; 24:E3804. [PMID: 31652589 PMCID: PMC6833076 DOI: 10.3390/molecules24203804] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 10/07/2019] [Accepted: 10/08/2019] [Indexed: 02/03/2023] Open
Abstract
Chemometrics is the chemistry field responsible for planning and extracting the maximum of information of experiments from chemical data using mathematical tools (linear algebra, statistics, and so on). Active pharmaceutical ingredients (APIs) can form impurities when exposed to excipients or environmental variables such as light, high temperatures, acidic or basic conditions, humidity, and oxidative environment. By considering that these impurities can affect the safety and efficacy of the drug product, it is necessary to know how these impurities are yielded and to establish the pathway of their formation. In this context, forced degradation studies of pharmaceutical drugs have been used for the characterization of physicochemical stability of APIs. These studies are also essential in the validation of analytical methodologies, in order to prove the selectivity of methods for the API and its impurities and to create strategies to avoid the formation of degradation products. This review aims to demonstrate how forced degradation studies have been actually performed and the applications of chemometric tools in related studies. Some papers are going to be discussed to exemplify the chemometric applications in forced degradation studies.
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Batch-to-batch variation in domestic paints: Insights into the newly commercialized recycled paints. Forensic Sci Int 2019; 303:109946. [DOI: 10.1016/j.forsciint.2019.109946] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 08/29/2019] [Accepted: 09/11/2019] [Indexed: 11/18/2022]
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Bovens M, Ahrens B, Alberink I, Nordgaard A, Salonen T, Huhtala S. Chemometrics in forensic chemistry - Part I: Implications to the forensic workflow. Forensic Sci Int 2019; 301:82-90. [PMID: 31132550 DOI: 10.1016/j.forsciint.2019.05.030] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 05/11/2019] [Accepted: 05/13/2019] [Indexed: 01/28/2023]
Abstract
The forensic literature shows a clear trend towards increasing use of chemometrics (i.e. multivariate analysis and other statistical methods). This can be seen in different disciplines such as drug profiling, arson debris analysis, spectral imaging, glass analysis, age determination, and more. In particular, current chemometric applications cover low-dimensional (e.g. drug impurity profiles) and high-dimensional data (e.g. Infrared and Raman spectra) and are therefore useful in many forensic disciplines. There is a dominant and increasing need in forensic chemistry for reliable and structured processing and interpretation of analytical data. This is especially true when classification (grouping) or profiling (batch comparison) is of interest. Chemometrics can provide additional information in complex crime cases and enhance productivity by improving the processes of data handling and interpretation in various applications. However, the use of chemometrics in everyday work tasks is often considered demanding by forensic scientists and, consequently, they are only reluctantly used. This article and following planned contributions are dedicated to those forensic chemists, interested in applying chemometrics but for any reasons are limited in the proper application of statistical tools - usually made for professionals - or the direct support of statisticians. Without claiming to be comprehensive, the literature reviewed revealed a sufficient overview towards the preferably used data handling and chemometric methods used to answer the forensic question. With this basis, a software tool will be designed (part of the EU project STEFA-G02) and handed out to forensic chemist with all necessary elements of data handling and evaluation. Because practical casework is less and less accompanied from the beginning to the end out of the same hand, more and more interfaces are built in through specialization of individuals. This article presents key influencing elements in the forensic workflow related to the most meaningful chemometric application and evaluation.
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Affiliation(s)
- M Bovens
- Zurich Forensic Science Institute, P.O. Box, 8021 Zurich, Switzerland.
| | - B Ahrens
- Federal Criminal Police Office, KT45, 65173 Wiesbaden, Germany
| | - I Alberink
- Netherlands Forensic Institute, Laan van Ypenburg 6, 2497 GB, The Hague, The Netherlands
| | - A Nordgaard
- National Forensic Centre, Swedish Police Authority, 58194 Linköping, Sweden
| | - T Salonen
- University of Helsinki, Faculty of Science, Department of Mathematics and Statistics, Gustaf Hällströmin katu 2, University of Helsinki, 00014, Finland
| | - S Huhtala
- National Bureau of Investigation, Jokiniemenkuja 4, 01370 Vantaa, Finland
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Falardeau M, Moran V, Muehlethaler C. A random object-oriented population study of household paints measured by infrared spectroscopy. Forensic Sci Int 2019; 297:72-80. [DOI: 10.1016/j.forsciint.2019.01.045] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Revised: 01/28/2019] [Accepted: 01/30/2019] [Indexed: 11/24/2022]
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27
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Chen H, Liu Y, Lu F, Cao Y, Zhang ZM. Eliminating Non-linear Raman Shift Displacement Between Spectrometers via Moving Window Fast Fourier Transform Cross-Correlation. Front Chem 2018; 6:515. [PMID: 30410877 PMCID: PMC6209635 DOI: 10.3389/fchem.2018.00515] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Accepted: 10/05/2018] [Indexed: 11/13/2022] Open
Abstract
Obtaining consistent spectra by using different spectrometers is of critical importance to the fields that rely heavily on Raman spectroscopy. The quality of both qualitative and quantitative analysis depends on the stability of specific Raman peak shifts across instruments. Non-linear drifts in the Raman shifts can, however, introduce additional complexity in model building, potentially even rendering a model impractical. Fortunately, various types of shift correction methods can be applied in data preprocessing in order to address this problem. In this work, a moving window fast Fourier transform cross-correlation is developed to correct non-linear shifts for synchronization of spectra obtained from different Raman instruments. The performance of this method is demonstrated by using a series of Raman spectra of pharmaceuticals as well as comparing with data obtained by using an existing standard Raman shift scattering procedure. The results show that after the removal of shift displacements, the spectral consistency improves significantly, i.e., the spectral correlation coefficient of the two Raman instruments increased from 0.87 to 0.95. The developed standardization method has, to a certain extent, reduced instrumental systematic errors caused by measurement, while enhancing spectral compatibility and consistency through a simple and flexible moving window procedure.
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Affiliation(s)
- Hui Chen
- School of Pharmacy, Second Military Medical University, Shanghai, China.,Department of Vascular Disease, Shanghai TCM-Integrated Hospital, Shanghai University of Traditional Chinese Medicine, Shanghai, China.,Quality Control Department, Shanghai Diracarta Biomedical Technology Co., Ltd, Shanghai, China
| | - Yan Liu
- School of Pharmacy, Second Military Medical University, Shanghai, China
| | - Feng Lu
- School of Pharmacy, Second Military Medical University, Shanghai, China
| | - Yongbing Cao
- Department of Vascular Disease, Shanghai TCM-Integrated Hospital, Shanghai University of Traditional Chinese Medicine, Shanghai, China.,Department of Foundation and New Drug Research, Shanghai TCM-Integrated Institute of Vascular Disease, Shanghai, China
| | - Zhi-Min Zhang
- College of Chemistry and Chemical Engineering, Central South University, Changsha, China
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28
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29
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Bonetti J. Mass spectral differentiation of positional isomers using multivariate statistics. Forensic Chem 2018. [DOI: 10.1016/j.forc.2018.06.001] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Verma N, Kumar R, Sharma V. Analysis of laser printer and photocopier toners by spectral properties and chemometrics. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 196:40-48. [PMID: 29428895 DOI: 10.1016/j.saa.2018.02.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Revised: 12/28/2017] [Accepted: 02/01/2018] [Indexed: 06/08/2023]
Abstract
The use of printers to generate falsified documents has become a common practice in today's world. The examination and identification of the printed matter in the suspected documents (civil or criminal cases) may provide important information about the authenticity of the document. In the present study, a total number of 100 black toner samples both from laser printers and photocopiers were examined using diffuse reflectance UV-Vis Spectroscopy. The present research is divided into two parts; visual discrimination and discrimination by using multivariate analysis. A comparison between qualitative and quantitative analysis showed that multivariate analysis (Principal component analysis) provides 99.59%pair-wise discriminating power for laser printer toners while 99.84% pair-wise discriminating power for photocopier toners. The overall results obtained confirm the applicability of UV-Vis spectroscopy and chemometrics, in the nondestructive analysis of toner printed documents while enhancing their evidential value for forensic applications.
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Affiliation(s)
- Neha Verma
- Institute of Forensic Science and Criminology, Panjab University, Chandigarh 160014, India; DFSS Fellow, Central Forensic Science Laboratory (Document Division), Chandigarh 160036, India
| | - Raj Kumar
- Institute of Forensic Science and Criminology, Panjab University, Chandigarh 160014, India
| | - Vishal Sharma
- Institute of Forensic Science and Criminology, Panjab University, Chandigarh 160014, India.
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31
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Ewing AV, Kazarian SG. Infrared spectroscopy and spectroscopic imaging in forensic science. Analyst 2018; 142:257-272. [PMID: 27905577 DOI: 10.1039/c6an02244h] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Infrared spectroscopy and spectroscopic imaging, are robust, label free and inherently non-destructive methods with a high chemical specificity and sensitivity that are frequently employed in forensic science research and practices. This review aims to discuss the applications and recent developments of these methodologies in this field. Furthermore, the use of recently emerged Fourier transform infrared (FT-IR) spectroscopic imaging in transmission, external reflection and Attenuated Total Reflection (ATR) modes are summarised with relevance and potential for forensic science applications. This spectroscopic imaging approach provides the opportunity to obtain the chemical composition of fingermarks and information about possible contaminants deposited at a crime scene. Research that demonstrates the great potential of these techniques for analysis of fingerprint residues, explosive materials and counterfeit drugs will be reviewed. The implications of this research for the examination of different materials are considered, along with an outlook of possible future research avenues for the application of vibrational spectroscopic methods to the analysis of forensic samples.
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Affiliation(s)
- Andrew V Ewing
- Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
| | - Sergei G Kazarian
- Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
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Gurbanov R, Gozen AG, Severcan F. Rapid classification of heavy metal-exposed freshwater bacteria by infrared spectroscopy coupled with chemometrics using supervised method. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 189:282-290. [PMID: 28823969 DOI: 10.1016/j.saa.2017.08.038] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Revised: 08/08/2017] [Accepted: 08/13/2017] [Indexed: 05/21/2023]
Abstract
Rapid, cost-effective, sensitive and accurate methodologies to classify bacteria are still in the process of development. The major drawbacks of standard microbiological, molecular and immunological techniques call for the possible usage of infrared (IR) spectroscopy based supervised chemometric techniques. Previous applications of IR based chemometric methods have demonstrated outstanding findings in the classification of bacteria. Therefore, we have exploited an IR spectroscopy based chemometrics using supervised method namely Soft Independent Modeling of Class Analogy (SIMCA) technique for the first time to classify heavy metal-exposed bacteria to be used in the selection of suitable bacteria to evaluate their potential for environmental cleanup applications. Herein, we present the powerful differentiation and classification of laboratory strains (Escherichia coli and Staphylococcus aureus) and environmental isolates (Gordonia sp. and Microbacterium oxydans) of bacteria exposed to growth inhibitory concentrations of silver (Ag), cadmium (Cd) and lead (Pb). Our results demonstrated that SIMCA was able to differentiate all heavy metal-exposed and control groups from each other with 95% confidence level. Correct identification of randomly chosen test samples in their corresponding groups and high model distances between the classes were also achieved. We report, for the first time, the success of IR spectroscopy coupled with supervised chemometric technique SIMCA in classification of different bacteria under a given treatment.
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Affiliation(s)
- Rafig Gurbanov
- Department of Molecular Biology and Genetics, Bilecik S.E. University, 11230 Bilecik, Turkey; Department of Biochemistry, Middle East Technical University, 06800 Ankara, Turkey
| | - Ayse Gul Gozen
- Department of Biological Sciences, Middle East Technical University, 06800 Ankara, Turkey
| | - Feride Severcan
- Department of Biological Sciences, Middle East Technical University, 06800 Ankara, Turkey; Department of Biophysics, Faculty of Medicine, Altinbas University, 34217 Istanbul, Turkey.
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Kumar R, Sharma V, Verma N, Diwan PK, Kumar V, Kumar V. Analysis of writing/printing paper via Thermogravimetric Analysis: application in forensic science. AUST J FORENSIC SCI 2017. [DOI: 10.1080/00450618.2017.1310921] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Raj Kumar
- Institute of Forensic Science and Criminology, Panjab University, Chandigarh, India
| | - Vishal Sharma
- Institute of Forensic Science and Criminology, Panjab University, Chandigarh, India
| | - Neha Verma
- Institute of Forensic Science and Criminology, Panjab University, Chandigarh, India
| | - Pawan Kumar Diwan
- Department of Applied Science, University Institute of Engineering & Technology (UIET), Kurukshetra University, Kurukshetra, India
| | - Vinay Kumar
- Department of Physics, Shri Mata Vaishno Devi University, Katra, India
| | - Vijay Kumar
- Department of Physics, Chandigarh University, Mohali, India
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Castillo-Peinado LS, Luque de Castro MD. An overview on forensic analysis devoted to analytical chemists. Talanta 2017; 167:181-192. [PMID: 28340709 DOI: 10.1016/j.talanta.2017.01.087] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2016] [Revised: 01/28/2017] [Accepted: 01/29/2017] [Indexed: 12/01/2022]
Abstract
The present article has as main aim to show analytical chemists interested in forensic analysis the world they will face if decision in favor of being a forensic analytical chemist is adopted. With this purpose, the most outstanding aspects of forensic analysis in dealing with sampling (involving both bodily and no bodily samples), sample preparation, and analytical equipment used in detection, identification and quantitation of key sample components are critically discussed. The role of the great omics in forensic analysis, and the growing role of the youngest of the great omics -metabolomics- are also discussed. The foreseeable role of integrative omics is also outlined.
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Affiliation(s)
- L S Castillo-Peinado
- Department of Analytical Chemistry, Annex Marie Curie Building, Campus of Rabanales, University of Córdoba, Córdoba, Spain; University of Córdoba, Agrifood Excellence Campus, ceiA3, Spain; Maimónides Institute of Biomedical Research (IMIBIC), Reina Sofía University Hospital, University of Córdoba, E-14071 Córdoba, Spain
| | - M D Luque de Castro
- Department of Analytical Chemistry, Annex Marie Curie Building, Campus of Rabanales, University of Córdoba, Córdoba, Spain; University of Córdoba, Agrifood Excellence Campus, ceiA3, Spain; Maimónides Institute of Biomedical Research (IMIBIC), Reina Sofía University Hospital, University of Córdoba, E-14071 Córdoba, Spain.
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35
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Determination of Geographical Origin and Anthocyanin Content of Black Goji Berry (Lycium ruthenicum Murr.) Using Near-Infrared Spectroscopy and Chemometrics. FOOD ANAL METHOD 2016. [DOI: 10.1007/s12161-016-0666-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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36
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Raman Spectroscopy of cultural heritage Materials: Overview of Applications and New Frontiers in Instrumentation, Sampling Modalities, and Data Processing. Top Curr Chem (Cham) 2016; 374:62. [DOI: 10.1007/s41061-016-0061-z] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2016] [Accepted: 07/30/2016] [Indexed: 12/31/2022]
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37
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Martyna A, Zadora G, Neocleous T, Michalska A, Dean N. Hybrid approach combining chemometrics and likelihood ratio framework for reporting the evidential value of spectra. Anal Chim Acta 2016; 931:34-46. [DOI: 10.1016/j.aca.2016.05.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Revised: 03/25/2016] [Accepted: 05/17/2016] [Indexed: 10/21/2022]
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38
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Manheim J, Doty KC, McLaughlin G, Lednev IK. Forensic Hair Differentiation Using Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) Spectroscopy. APPLIED SPECTROSCOPY 2016; 70:1109-1117. [PMID: 27412186 DOI: 10.1177/0003702816652321] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Accepted: 12/02/2015] [Indexed: 06/06/2023]
Abstract
Hair and fibers are common forms of trace evidence found at crime scenes. The current methodology of microscopic examination of potential hair evidence is absent of statistical measures of performance, and examiner results for identification can be subjective. Here, attenuated total reflection (ATR) Fourier transform-infrared (FT-IR) spectroscopy was used to analyze synthetic fibers and natural hairs of human, cat, and dog origin. Chemometric analysis was used to differentiate hair spectra from the three different species, and to predict unknown hairs to their proper species class, with a high degree of certainty. A species-specific partial least squares discriminant analysis (PLSDA) model was constructed to discriminate human hair from cat and dog hairs. This model was successful in distinguishing between the three classes and, more importantly, all human samples were correctly predicted as human. An external validation resulted in zero false positive and false negative assignments for the human class. From a forensic perspective, this technique would be complementary to microscopic hair examination, and in no way replace it. As such, this methodology is able to provide a statistical measure of confidence to the identification of a sample of human, cat, and dog hair, which was called for in the 2009 National Academy of Sciences report. More importantly, this approach is non-destructive, rapid, can provide reliable results, and requires no sample preparation, making it of ample importance to the field of forensic science.
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Affiliation(s)
- Jeremy Manheim
- Department of Chemistry, State University of New York, USA
| | - Kyle C Doty
- Department of Chemistry, State University of New York, USA
| | | | - Igor K Lednev
- Department of Chemistry, State University of New York, USA
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39
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Lambert D, Muehlethaler C, Esseiva P, Massonnet G. Combining spectroscopic data in the forensic analysis of paint: Application of a multiblock technique as chemometric tool. Forensic Sci Int 2016; 263:39-47. [DOI: 10.1016/j.forsciint.2016.03.049] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Revised: 03/09/2016] [Accepted: 03/25/2016] [Indexed: 11/17/2022]
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40
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Differentiation of aged fibers by Raman spectroscopy and multivariate data analysis. Talanta 2016; 154:467-73. [PMID: 27154701 DOI: 10.1016/j.talanta.2016.04.013] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2015] [Revised: 04/01/2016] [Accepted: 04/05/2016] [Indexed: 11/22/2022]
Abstract
Raman spectroscopy followed by multivariate data analysis was used to analyze cotton fibers dyed using similar formulations and submitted to different aging conditions. Spectra were collected on a commercial instrument using a near-infrared laser with a 780nm light source. Discriminant analysis allowed to correctly classify the aged fibers 100% of the time. The prediction ability of the calculated model was estimated to be 100% by the "leave-one-out" cross-validation for 3 out of the 4 series under investigation. Finally, reliability of the developed approach for the discrimination of aged vs new fibers was confirmed by the analysis of commercial polyamide and polyester textiles submitted to the same aging process.
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41
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Chemical characterisation of spray paints by a multi-analytical (Py/GC–MS, FTIR, μ-Raman) approach. Microchem J 2016. [DOI: 10.1016/j.microc.2015.04.016] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Bocklitz TW, Guo S, Ryabchykov O, Vogler N, Popp J. Raman Based Molecular Imaging and Analytics: A Magic Bullet for Biomedical Applications!? Anal Chem 2015; 88:133-51. [DOI: 10.1021/acs.analchem.5b04665] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Thomas W. Bocklitz
- Institute
of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
| | - Shuxia Guo
- Institute
of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- InfectoGnostics
Forschungscampus Jena e.V., Zentrum für Angewandte Forschung, Philosophenweg 7, 07743 Jena, Germany
| | - Oleg Ryabchykov
- Institute
of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- InfectoGnostics
Forschungscampus Jena e.V., Zentrum für Angewandte Forschung, Philosophenweg 7, 07743 Jena, Germany
| | - Nadine Vogler
- Institute
of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- InfectoGnostics
Forschungscampus Jena e.V., Zentrum für Angewandte Forschung, Philosophenweg 7, 07743 Jena, Germany
| | - Jürgen Popp
- Institute
of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Strasse 9, 07745 Jena, Germany
- InfectoGnostics
Forschungscampus Jena e.V., Zentrum für Angewandte Forschung, Philosophenweg 7, 07743 Jena, Germany
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McIlroy JW, Smith RW, McGuffin VL. Assessing the effect of data pretreatment procedures for principal components analysis of chromatographic data. Forensic Sci Int 2015; 257:1-12. [DOI: 10.1016/j.forsciint.2015.07.038] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Revised: 07/23/2015] [Accepted: 07/24/2015] [Indexed: 11/28/2022]
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Smith R. Chemometrics. Forensic Chem 2015. [DOI: 10.1002/9781118897768.ch12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Girod A, Xiao L, Reedy B, Roux C, Weyermann C. Fingermark initial composition and aging using Fourier transform infrared microscopy (μ-FTIR). Forensic Sci Int 2015; 254:185-96. [DOI: 10.1016/j.forsciint.2015.07.022] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Revised: 06/29/2015] [Accepted: 07/07/2015] [Indexed: 10/23/2022]
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Schnegg M, Massonnet G, Gueissaz L. Motorcycle helmets: What about their coating? Forensic Sci Int 2015; 252:114-26. [DOI: 10.1016/j.forsciint.2015.04.034] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2014] [Revised: 04/23/2015] [Accepted: 04/24/2015] [Indexed: 11/29/2022]
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Banas K, Banas A, Gajda M, Pawlicki B, Kwiatek WM, Breese MBH. Pre-processing of Fourier transform infrared spectra by means of multivariate analysis implemented in the R environment. Analyst 2015; 140:2810-4. [PMID: 25723954 DOI: 10.1039/c5an00002e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Pre-processing of Fourier transform infrared (FTIR) spectra is typically the first and crucial step in data analysis. Very often hyperspectral datasets include the regions characterized by the spectra of very low intensity, for example two-dimensional (2D) maps where the areas with only support materials (like mylar foil) are present. In that case segmentation of the complete dataset is required before subsequent evaluation. The method proposed in this contribution is based on a multivariate approach (hierarchical cluster analysis), and shows its superiority when compared to the standard method of cutting-off by using only the mean spectral intensity. Both techniques were implemented and their performance was tested in the R statistical environment - open-source platform - that is a favourable solution if the repeatability and transparency are the key aspects.
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Affiliation(s)
- Krzysztof Banas
- Singapore Synchrotron Light Source, 5 Research Link, Singapore 117603.
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González-Vidal JJ, Pérez-Pueyo R, Soneira MJ, Ruiz-Moreno S. Independent component analysis-based algorithm for automatic identification of Raman spectra applied to artistic pigments and pigment mixtures. APPLIED SPECTROSCOPY 2015; 69:314-322. [PMID: 25665103 DOI: 10.1366/14-07502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A new method has been developed to automatically identify Raman spectra, whether they correspond to single- or multicomponent spectra. The method requires no user input or judgment. There are thus no parameters to be tweaked. Furthermore, it provides a reliability factor on the resulting identification, with the aim of becoming a useful support tool for the analyst in the decision-making process. The method relies on the multivariate techniques of principal component analysis (PCA) and independent component analysis (ICA), and on some metrics. It has been developed for the application of automated spectral analysis, where the analyzed spectrum is provided by a spectrometer that has no previous knowledge of the analyzed sample, meaning that the number of components in the sample is unknown. We describe the details of this method and demonstrate its efficiency by identifying both simulated spectra and real spectra. The method has been applied to artistic pigment identification. The reliable and consistent results that were obtained make the methodology a helpful tool suitable for the identification of pigments in artwork or in paint in general.
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Affiliation(s)
- Juan José González-Vidal
- Universitat Politècnica de Catalunya, Signal Theory and Communications Department, ETSETB, C/ Sor Eulàlia d'Anzizu s/n, D5, Campus Nord, 08034 Barcelona, Spain
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Hayes PA, Vahur S, Leito I. ATR-FTIR spectroscopy and quantitative multivariate analysis of paints and coating materials. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 133:207-213. [PMID: 24945861 DOI: 10.1016/j.saa.2014.05.058] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Accepted: 05/06/2014] [Indexed: 06/03/2023]
Abstract
The applicability of ATR-FTIR spectroscopy with partial least squares (PLS) data analysis was evaluated for quantifying the components of mixtures of paint binding media and pigments, and alkyd resins. PLS methods were created using a number of standard mixtures. Validation and measurement uncertainty estimation was carried out. Binary, ternary and quaternary mixtures of several common binding media and pigments were quantified, with standard measurement uncertainties in most cases below 3g/100g. Classes of components - aromatic anhydrides and alcohols - used in alkyd resin synthesis were also successfully quantified, with standard uncertainties in the range of 2-3g/100g. This is a more demanding application because in alkyd resins aromatic anhydrides and alcohols have reacted to form a polyester, and are not present in their original forms. Once a PLS method has been calibrated, analysis time and cost are significantly reduced from typical quantitative methods such as GC/MS. This is beneficial in the case of routine analysis where the components are known.
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Affiliation(s)
- Philippa Alice Hayes
- University of Tartu, Institute of Chemistry, 14a Ravila str, 50411 Tartu, Estonia; National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton SO14 3ZH, United Kingdom
| | - Signe Vahur
- University of Tartu, Institute of Chemistry, 14a Ravila str, 50411 Tartu, Estonia.
| | - Ivo Leito
- University of Tartu, Institute of Chemistry, 14a Ravila str, 50411 Tartu, Estonia
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Muehlethaler C, Massonnet G, Esseiva P. Discrimination and classification of FTIR spectra of red, blue and green spray paints using a multivariate statistical approach. Forensic Sci Int 2014; 244:170-8. [DOI: 10.1016/j.forsciint.2014.08.038] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Revised: 07/21/2014] [Accepted: 08/27/2014] [Indexed: 11/28/2022]
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