1
|
Vanin S, Tuccia F, Pradelli J, Carta G, Giordani G. Identification of Diptera Puparia in Forensic and Archeo-Funerary Contexts. INSECTS 2024; 15:599. [PMID: 39194804 DOI: 10.3390/insects15080599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Revised: 07/28/2024] [Accepted: 07/31/2024] [Indexed: 08/29/2024]
Abstract
Diptera identification is fundamental in forensic entomology as well as in funerary archeoentomology, where the challenge is exacerbated by the presence of immature stages such as larvae and puparia. In these two developmental stages, specimens possess a very limited number of diagnostic features, and for puparia, there is also a lack of identification tools such as descriptions and identification keys. Morphological analysis, DNA-based techniques, and cuticular chemical analyses all show good potential for species identification; however, they also have some limitations. DNA-based identification is primarily hindered by the incompleteness of genetic databases and the presence of PCR inhibitors often co-extracted from the puparial cuticle. Chemical analysis of the cuticle is showing promising results, but this approach is also limited by the insufficient profile database and requires specific, expensive equipment, as well as trained personnel. Additionally, to ensure the repeatability of the analysis-a critical aspect in forensic investigations-and to preserve precious and unique specimens from museum collections, non-invasive protocols and techniques must be prioritized for species identification.
Collapse
Affiliation(s)
- Stefano Vanin
- Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, 16132 Genoa, Italy
- National Research Council, Institute for the Study of Anthropic Impact and Sustainability in the Marine Environment (CNR-IAS), 16149 Genova, Italy
| | - Fabiola Tuccia
- School of applied Sciences, University of Huddersfield, Huddersfield HD1 3DH, UK
| | - Jennifer Pradelli
- School of applied Sciences, University of Huddersfield, Huddersfield HD1 3DH, UK
| | - Giuseppina Carta
- Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, 16132 Genoa, Italy
| | | |
Collapse
|
2
|
Walczak K, Grzywacz A. An illustrated identification key to early instar larvae of forensically important Muscidae (Diptera) of the western Palaearctic region. Forensic Sci Int 2024; 360:112028. [PMID: 38772063 DOI: 10.1016/j.forsciint.2024.112028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 04/01/2024] [Accepted: 04/15/2024] [Indexed: 05/23/2024]
Abstract
There is a significant gap in the availability of comprehensive identification keys for the early larval stages of forensically important fly species. While well-documented identification keys exist for the third instar larvae, particularly for the Calliphoridae, Muscidae and Sarcophagidae families, there is a notable scarcity of keys for the first, except Calliphoridae, and the second instar larvae, with no such resources available for muscid species. The second instar larvae suffer the most from the lack of morphological descriptions and available identification keys. The Muscidae is one of the most frequently reported dipteran families of forensic importance colonising animal cadavers and human corpses. Nevertheless, descriptions of the morphology of their early instars remain scarce and limited to only a few species, thus their larval identification is challenging or impossible. Considering the numerous challenges associated with studying small-sized entomological material, we tested whether it is feasible to identify muscid flies to the species or at least genus level based predominantly on the details of the cephaloskeleton. To overcome the obstacle of observing details of small sclerites, especially their shapes and interconnections, we effectively employed confocal laser scanning microscopy (CLSM) as a supplementary method for light microscopy (LM). This study provides an identification key for first and second instar larvae of forensically important muscid species from the western Palaearctic (Europe, North Africa, Middle East). The proposed key primarily utilises details of the cephaloskeleton with only addition of external morphology.
Collapse
Affiliation(s)
- Kinga Walczak
- Department of Ecology and Biogeography, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Toruń, Poland; Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Poland.
| | - Andrzej Grzywacz
- Department of Ecology and Biogeography, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University in Toruń, Poland; Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Poland.
| |
Collapse
|
3
|
Durango-Manrique Y, López-Rubio A, Gómez GF. Molecular differentiation analysis of ten putative species of Fannia (Diptera: Fanniidae) collected in carrion-baited traps from Colombia. MEDICAL AND VETERINARY ENTOMOLOGY 2024. [PMID: 38794959 DOI: 10.1111/mve.12732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Accepted: 05/10/2024] [Indexed: 05/27/2024]
Abstract
The genus Fannia is the most representative of the Fannidae family of true flies with worldwide distribution. Some species are attracted to decomposing materials and live vertebrate animals, which makes them important in forensics, medical and veterinary fields. However, identifying Fannia species can be difficult due to the high similarity in the external morphology of females and limited descriptions and morphological keys. Herein, molecular markers could provide a complementary tool for species identification. However, molecular identification has still limited application since databases contain few data for neotropical species of Fannia. This study assessed the potential of two molecular markers, the COI-3' region and internal transcribed spacer 2 (ITS2), to differentiate 10 putative species of the genus Fannia from Colombia using distance-based and tree-based approaches. The partial ITS2 and/or COI-3' regions allowed molecular diagnosis of six species, while pairs of species Fannia colazorrensis + F. dodgei and F. laclara + F. aburrae are conflicting. Although these results might suggest that conflicting pair species are conspecific, consistent morphological differences between males do not support this hypothesis. The lack of differentiation at the nuclear and mitochondrial molecular markers for the conflicting species may be due to incomplete evolutionary lineage separation, hybridization, or introgression events. In addition, sexual selection on male morphological traits before species-specific differences in molecular markers emerge may partially explain the results. Our study provides a valuable dataset to identify and confirm some Fannia species molecularly. Further, they could be used to associate females and immature stages with their conspecifics as a baseline to deep into their biology, ecology, distribution and potential applications in forensic and medico-veterinary entomology.
Collapse
Affiliation(s)
- Yesica Durango-Manrique
- Grupo Bioforense, Facultad de Derecho y Ciencias Forenses, Tecnológico de Antioquia Institución Universitaria, Medellín, Colombia
| | - Andrés López-Rubio
- Grupo Bioforense, Facultad de Derecho y Ciencias Forenses, Tecnológico de Antioquia Institución Universitaria, Medellín, Colombia
| | - Giovan F Gómez
- Universidad Nacional de Colombia-Sede de La Paz, Dirección Académica, Escuela de Pregrados, La Paz, Colombia
| |
Collapse
|
4
|
Durango-Manrique YS, López-Rubio A, Gutiérrez LA, Isaza JP, Gómez GF. Mitochondrial genome comparison and phylogenetic position of Fannia pusio among the Calyptratae flies. Heliyon 2024; 10:e27697. [PMID: 38524611 PMCID: PMC10958369 DOI: 10.1016/j.heliyon.2024.e27697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 02/07/2024] [Accepted: 03/05/2024] [Indexed: 03/26/2024] Open
Abstract
Fannia pusio, the chicken dung fly species, remains unexplored despite its forensic, sanitary, and veterinary importance in the Nearctic and Neotropical regions. In this study, we obtained the complete mitochondrial genome of Fannia pusio for the first time using next-generation sequencing. We compared it with previously published mitogenomes of the genus from the Palearctic region, and its phylogenetic position was studied based on the concatenated protein-coding genes (PCGs) dataset of Calyptratae flies. The circular mitochondrial genome of F. pusio is 16,176 bp in length, with a high A + T content (78.3%), whose gene synteny, codon usage analysis, and amino acid frequency are similar to previously reported Fannia mitogenomes. All PCGs underwent purifying selection except the nad2 gene. Interspecific K2P distances of PCGs of Fannia yielded an average of 12.4% (8.1%-21.1%). The Fannia genus is monophyletic and closely related to Muscidae based on molecular data. Further taxonomic sampling is required to deep into the phylogenetic relationships of the originally proposed species-groups and subgroups within the genus. These results provide a valuable dataset for studying the mitochondrial genome evolution and a resource for the taxonomy and systematics of Fannia.
Collapse
Affiliation(s)
- Yesica S Durango-Manrique
- Grupo de investigación Bioforense, Facultad de Derecho y Ciencias Forenses, Tecnológico de Antioquia, Institución Universitaria, Medellín, Colombia
| | - Andrés López-Rubio
- Grupo de investigación Bioforense, Facultad de Derecho y Ciencias Forenses, Tecnológico de Antioquia, Institución Universitaria, Medellín, Colombia
| | - Lina A Gutiérrez
- Grupo Biología de Sistemas, Escuela de Ciencias de La Salud, Facultad de Medicina, Universidad Pontificia Bolivariana, Medellín, Colombia
| | - Juan P Isaza
- Grupo Biología de Sistemas, Escuela de Ciencias de La Salud, Facultad de Medicina, Universidad Pontificia Bolivariana, Medellín, Colombia
| | - Giovan F Gómez
- Universidad Nacional de Colombia - Sede de La Paz - Dirección Académica, Escuela de Pregrados - Km 9 vía Valledupar - La Paz, La Paz, Colombia
| |
Collapse
|
5
|
Zhai X, Yang M, Zhang W, Tuerxun A, Mo Y. Mitochondrial and nuclear DNA-based identification of some forensically important calliphoridae (diptera) in Luoyang of China. JOURNAL OF FORENSIC SCIENCE AND MEDICINE 2022. [DOI: 10.4103/jfsm.jfsm_3_21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
|
6
|
Xu W, Wang Y, Wang M, Wang YH, Wang JF. Identification of Common Sarcosaprophagous Flies in the Yangtze River Delta by COⅠ Gene. FA YI XUE ZA ZHI 2021; 37:611-614. [PMID: 35187910 DOI: 10.12116/j.issn.1004-5619.2020.400611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
OBJECTIVES To identify the common sarcosaprophagous flies in the Yangtze River Delta based on mitochondrial cytochrome c oxidase subunit Ⅰ(COⅠ) gene sequence and verify the reliability of this method. METHODS Seven common genetically stable sarcosaprophagous flies in three families and six genera were collected from large domestic pig carcasses placed in the field and cultured in the laboratory for many generations. The whole genome DNA was extracted and the COⅠ gene fragment was amplified. The forward and reverse sequencing was followed by splicing. The base composition of the amplified fragment and the rate of interspecific evolutionary divergence were analyzed by software such as Mega 7.0.26. The phylogenetic tree of COⅠ gene sequence of common necrophagous flies in the Yangtze River Delta was established by neighbor joining (NJ) method and unweighted pair-group method with arithmetic means (UPGMA) method. RESULTS The average base composition of different flies was A(30.14%), T(38.23%), C(15.98%), G(15.65%). The rate of interspecific evolutionary divergence ranged from 2.2% to 15.3%, the lowest rate was between Chrysomya megacephala and Chrysomya pinguis, the highest rate was between Muscina stabulans and Boettcherisca peregrina. CONCLUSIONS COⅠ gene can be used to identify the common necrophagous flies in the Yangtze River Delta.
Collapse
Affiliation(s)
- Wang Xu
- Department of Forensic Medicine, Soochow University, Suzhou 215000, Jiangsu Province, China
| | - Yu Wang
- Department of Forensic Medicine, Soochow University, Suzhou 215000, Jiangsu Province, China
| | - Man Wang
- Department of Forensic Medicine, Soochow University, Suzhou 215000, Jiangsu Province, China
| | - Ying-Hui Wang
- Department of Forensic Medicine, Soochow University, Suzhou 215000, Jiangsu Province, China
| | - Jiang-Feng Wang
- Department of Forensic Medicine, Soochow University, Suzhou 215000, Jiangsu Province, China
| |
Collapse
|
7
|
de la Fuente AM, Caparrós N, Mora-Rodríguez JM, Molina M, Aleix-Mata G, Velarde R, Fidalgo LE, López-Beceiro AM, Lorite P, Boos M, Faure E, Pérez JM, Sánchez A. Characterization of New Molecular Markers of Three Botflies Parasitizing Cervid Hosts. JOURNAL OF MEDICAL ENTOMOLOGY 2021; 58:1463-1469. [PMID: 33537768 DOI: 10.1093/jme/tjab006] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Indexed: 06/12/2023]
Abstract
Specific identification of oestrid larvae is usually problematic not only when using morphobiometric features, but also when applying molecular criteria, since very few molecular markers have been described for this group of flies. New molecular markers for oestrid are needed for more reliable species identification, diagnostic purposes, and epidemiological surveys; moreover, they can help in phylogenetic reconstruction. Here, we report the characterization of COI, 28S rDNA, ITS1, and ITS2 in Cephenemyia stimulator from roe deer and in Cephenemyia auribarbis and Pharyngomyia picta from red deer. The COI and 28S rDNA are very uniform in length, while the ITSs sequences are highly variable at both intraspecific and interspecific levels. The described ITSs sequences were longer than those described for other dipteran species by the presence of simple repeats and tandem repeat sequences. In C. auribarbis both ITS1 and ITS2 appeared as two variants, one short and the other long. In general, the analyzed markers present low intraspecific genetic variation and high interspecific variation. ITSs showed the greatest amount of intraspecific and interspecific variation. Phylogenetic analysis demonstrated that the characterized sequences differentiate the species and genera of Oestridae.
Collapse
Affiliation(s)
- Ana M de la Fuente
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
- Wildlife Ecology & Health Group (WE&H)
| | - Noelia Caparrós
- Departamento de Biología Experimental, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
| | - José M Mora-Rodríguez
- Departamento de Biología Experimental, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
| | - María Molina
- Departamento de Biología Experimental, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
| | - Gaël Aleix-Mata
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
- Departamento de Biología Experimental, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
| | - Roser Velarde
- Wildlife Ecology & Health Group (WE&H)
- Servei d'Ecopatologia de Fauna Salvatge (SEFaS), Departament de Medicina i Cirurgia Animals, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain
| | - Luis E Fidalgo
- Departamento de Anatomía, Producción Animal y Ciencias Clínicas Veterinarias, Universidad de Santiago de Compostela, Lugo, Spain
| | - Ana M López-Beceiro
- Departamento de Anatomía, Producción Animal y Ciencias Clínicas Veterinarias, Universidad de Santiago de Compostela, Lugo, Spain
| | - Pedro Lorite
- Departamento de Biología Experimental, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
| | - Mathieu Boos
- Research Agency in Applied Ecology, Naturaconsta, Wilshausen, France
- Pôle Scientifique, Fédération Nationale des Chasseurs, 13 rue du Général Leclerc, Issy-Les-Moulineaux, Cedex, France
| | - Eva Faure
- Pôle Scientifique, Fédération Nationale des Chasseurs, 13 rue du Général Leclerc, Issy-Les-Moulineaux, Cedex, France
- Commission Sanitaire, Fédération Nationale des Chasseurs, 13 rue du Général Leclerc, Issy-les-Moulineaux, Cedex, France
| | - Jesús M Pérez
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
- Servei d'Ecopatologia de Fauna Salvatge (SEFaS), Departament de Medicina i Cirurgia Animals, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain
| | - Antonio Sánchez
- Departamento de Biología Experimental, Universidad de Jaén, Campus Las Lagunillas, s.n., Jaén, Spain
| |
Collapse
|
8
|
Oliveira PV, de Almeida FAN, Lugon MD, Britto KB, Oliveira-Costa J, Santos AR, Paneto GG. Using high-resolution melting to identify Calliphoridae (blowflies) species from Brazil. PeerJ 2020; 8:e9680. [PMID: 33335803 PMCID: PMC7713596 DOI: 10.7717/peerj.9680] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 07/17/2020] [Indexed: 01/22/2023] Open
Abstract
Forensic entomology is the study of insects and other arthropods used in the solution of crimes. Most of entomological evidences strongly depend on accurate species identification. Therefore, new methods are being developed due to difficulties in morphological identification, including molecular methods such as High-Resolution Melting. In this study, we reported a new HRM primer set to identify forensically important Calliphoridae (blowflies) from Brazil. For such purpose, Calliphoridae species of forensic importance in Brazil were listed and confirmed by specialists. Mitochondrial COI sequences of those species were downloaded from databases and aligned, and polymorphic variations were selected for distinction between species. Based on it, HRM primers were designed. Forty-three fly samples representing six species were tested in the HRM assay. All samples had the COI gene sequenced to validate the result. Identifying and differentiating the six species proposed using a combination of two amplicons was possible. The protocol was effective even for old insect specimens, collected and preserved dried for more than ten years, unlike the DNA sequencing technique that failed for those samples. The HRM technique proved to be an alternative tool to DNA sequencing, with advantage of amplifying degraded samples and being fast and cheaper than the sequencing technique.
Collapse
Affiliation(s)
- Pablo Viana Oliveira
- Programa de Pós-Graduação em Biotecnologia, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
| | | | - Magda Delorence Lugon
- Programa de Pós-Graduação em Biotecnologia, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
| | - Karolinni Bianchi Britto
- Programa de Pós-Graduação em Biotecnologia, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
| | - Janyra Oliveira-Costa
- Polícia Civil do Estado do Rio de Janeiro, Instituto Médico Legal Afrânio Peixoto, Rio de Janeiro, Rio de Janeiro, Brazil
| | - Alexandre Rosa Santos
- Centro de Ciências Agrárias e Engenharias, Universidade Federal do Espírito Santo, Alegre, Espírito Santo, Brazil
| | - Greiciane Gaburro Paneto
- Programa de Pós-Graduação em Biotecnologia, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
- Centro de Ciências Exatas, Naturais e da Saúde, Universidade Federal do Espírito Santo, Alegre, Espírito Santo, Brazil
| |
Collapse
|
9
|
Fuentes-López A, Ruiz C, Galián J, Romera E. Molecular identification of forensically important fly species in Spain using COI barcodes. Sci Justice 2019; 60:293-302. [PMID: 32381246 DOI: 10.1016/j.scijus.2019.12.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Revised: 10/10/2019] [Accepted: 12/08/2019] [Indexed: 12/25/2022]
Abstract
Species identification with DNA barcodes has been proven to be effective on different organisms and, particularly, has become a routinely used and quite accurate tool in forensic entomology to study necrophagous Diptera species. In this study, we analysed 215 specimens belonging to 42 species of 17 genera, from 9 different Diptera families. Flies were collected in 39 Spanish localities of the Iberian Peninsula sampled across three years in the four seasons. Intraspecific variation ranged from 0 to 2.46% whereas interspecific variation fluctuated from 3.07 to 14.59%, measuring 651 pb of the cytochrome oxidase subunit one (COI) gene. Neighbour-Joining analysis was carried out to investigate the molecular identification capabilities of the barcoding region, recovering almost all species as distinct monophyletic groups. The species groupings were generally consistent with morphological and molecular identifications. This work, which is the first with this intensive and extensive sampling in this area, shows that the COI barcode is an appropriate marker for unambiguous identification of forensically important Diptera in Spain.
Collapse
Affiliation(s)
- Alberto Fuentes-López
- Departamento de Zoología y Antropología Física, Campus Mare Nostrum, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain.
| | - Carlos Ruiz
- Departamento de Zoología y Antropología Física, Campus Mare Nostrum, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain; Departamento de Biología Animal, Edafología y Geología, Universidad de La Laguna, 38200 La Laguna, Tenerife, Canary Islands, Spain.
| | - José Galián
- Departamento de Zoología y Antropología Física, Campus Mare Nostrum, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain.
| | - Elena Romera
- Departamento de Zoología y Antropología Física, Campus Mare Nostrum, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain.
| |
Collapse
|
10
|
Arias-Robledo G, Wall R, Szpila K, Shpeley D, Whitworth T, Stark T, King R, Stevens J. Ecological and geographical speciation in Lucilia bufonivora: The evolution of amphibian obligate parasitism. INTERNATIONAL JOURNAL FOR PARASITOLOGY-PARASITES AND WILDLIFE 2019; 10:218-230. [PMID: 31667085 PMCID: PMC6812060 DOI: 10.1016/j.ijppaw.2019.09.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 09/17/2019] [Accepted: 09/20/2019] [Indexed: 11/16/2022]
Abstract
Lucilia (Diptera: Calliphoridae) is a genus of blowflies comprised largely of saprophagous and facultative parasites of livestock. Lucilia bufonivora, however, exhibits a unique form of obligate parasitism of amphibians, typically affecting wild hosts. The evolutionary route by which amphibian myiasis arose, however, is not well understood due to the low phylogenetic resolution in existing nuclear DNA phylogenies. Furthermore, the timing of when specificity for amphibian hosts arose in L. bufonivora is also unknown. In addition, this species was recently reported for the first time in North America (Canada) and, to date, no molecular studies have analysed the evolutionary relationships between individuals from Eastern and Western hemispheres. To provide broader insights into the evolution of the amphibian parasitic life history trait and to estimate when the trait first arose, a time-scaled phylogeny was inferred from a concatenated data set comprising mtDNA, nDNA and non-coding rDNA (COX1, per and ITS2 respectively). Specimens from Canada, the UK, Poland, Switzerland, the Netherlands and Germany were analysed, as well as individuals from its sister taxa, the saprophage Lucilia silvarum and a Nearctic species also implicated in amphibian myiasis, Lucilia elongata. Obligate amphibian parasitism appears to have arisen ~4 mya, likely as a result of niche displacement of a saprophagous/facultative parasite ancestor. Consistent paraphyly of L. bufonivora with respect to L. elongata across single-gene phylogenies and high mtDNA genetic distances between Nearctic and Palearctic individuals suggest on-going cryptic speciation facilitated by geographical isolation. These findings suggest that recent reports of L. bufonivora in the Nearctic do not constitute a recent introduction, but instead suggest that it remained unrecorded due to taxonomic confusion and low abundance. This is the first study to confirm the involvement of L. bufonivora in amphibian myiasis in Canada using DNA-based identification methods. Within Lucilia, a small genus of blowflies mostly comprised of carrion-breeding species, obligate parasitism for amphibians evolved around 4 mya. Geographic isolation between Nearctic and Palearctic lineages is facilitating on-going cryptic speciation of Lucilia bufonivora. First positive identification of L. bufonivora from two confirmed cases of amphibian myiasis in North America.
Collapse
Affiliation(s)
- G. Arias-Robledo
- Biosciences, College of Life and Environmental Sciences, University of Exeter, UK
- School of Biological Sciences, University of Bristol, UK
- Corresponding author. College of Life and Environmental Sciences, University of Exeter, Prince of Wales Rd, Exeter, EX4 4PS, UK.
| | - R. Wall
- School of Biological Sciences, University of Bristol, UK
| | - K. Szpila
- Department of Ecology and Biogeography, Faculty of Biology and Environmental Protection, Nicolaus Copernicus University, Toruń, Poland
| | - D. Shpeley
- E.H. Strickland Entomological Museum, Department of Biological Sciences, University of Alberta, Canada
| | - T. Whitworth
- Department of Entomology, Washington State University, Pullman, USA
| | - T. Stark
- Reptile, Amphibian and Fish Conservation Netherlands (RAVON), Nijmegen, the Netherlands
| | - R.A. King
- Biosciences, College of Life and Environmental Sciences, University of Exeter, UK
| | - J.R. Stevens
- Biosciences, College of Life and Environmental Sciences, University of Exeter, UK
| |
Collapse
|
11
|
Gemmellaro MD, Hamilton GC, Ware JL. Review of Molecular Identification Techniques for Forensically Important Diptera. JOURNAL OF MEDICAL ENTOMOLOGY 2019; 56:887-902. [PMID: 31173634 DOI: 10.1093/jme/tjz040] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Indexed: 06/09/2023]
Abstract
The medico-legal section of forensic entomology focuses on the analysis of insects associated with a corpse. Such insects are identified, and their life history characteristics are evaluated to provide information related to the corpse, such as postmortem interval and time of colonization. Forensically important insects are commonly identified using dichotomous keys, which rely on morphological characteristics. Morphological identifications can pose a challenge as local keys are not always available and can be difficult to use, especially when identifying juvenile stages. If a specimen is damaged, certain keys cannot be used for identification. In contrast, molecular identification can be a better instrument to identify forensically important insects, regardless of life stage or specimen completeness. Despite more than 20 yr since the first use of molecular data for the identification of forensic insects, there is little overlap in gene selection or phylogenetic methodology among studies, and this inconsistency reduces efficiency. Several methods such as genetic distance, reciprocal monophyly, or character-based methods have been implemented in forensic identification studies. It can be difficult to compare the results of studies that employ these different methods. Here we present a comprehensive review of the published results for the molecular identification of Diptera of forensic interest, with an emphasis on evaluating variation among studies in gene selection and phylogenetic methodology.
Collapse
Affiliation(s)
| | | | - Jessica L Ware
- Department of Entomology, Rutgers University, New Brunswick, NJ
| |
Collapse
|
12
|
Wing measurement can be used to identify European blow flies (Diptera: Calliphoridae) of forensic importance. Forensic Sci Int 2019; 296:1-8. [DOI: 10.1016/j.forsciint.2019.01.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Revised: 12/27/2018] [Accepted: 01/02/2019] [Indexed: 01/04/2023]
|
13
|
Bortolini S, Giordani G, Tuccia F, Maistrello L, Vanin S. Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species? PeerJ 2018; 6:e5962. [PMID: 30588393 PMCID: PMC6301277 DOI: 10.7717/peerj.5962] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Accepted: 10/17/2018] [Indexed: 11/23/2022] Open
Abstract
Species identification is a crucial step in forensic entomology. In several cases the calculation of the larval age allows the estimation of the minimum Post-Mortem Interval (mPMI). A correct identification of the species is the first step for a correct mPMI estimation. To overcome the difficulties due to the morphological identification especially of the immature stages, a molecular approach can be applied. However, difficulties in separation of closely related species are still an unsolved problem. Sequences of 4 different genes (COI, ND5, EF-1α, PER) of 13 different fly species collected during forensic experiments (Calliphora vicina, Calliphora vomitoria, Lucilia sericata, Lucilia illustris, Lucilia caesar, Chrysomya albiceps, Phormia regina, Cynomya mortuorum, Sarcophaga sp., Hydrotaea sp., Fannia scalaris, Piophila sp., Megaselia scalaris) were evaluated for their capability to identify correctly the species. Three concatenated sequences were obtained combining the four genes in order to verify if longer sequences increase the probability of a correct identification. The obtained results showed that this rule does not work for the species L. caesar and L. illustris. Future works on other DNA regions are suggested to solve this taxonomic issue.
Collapse
Affiliation(s)
- Sara Bortolini
- Department of Life Sciences, University of Modena and Reggio Emilia, Reggio Emilia, Italy
| | - Giorgia Giordani
- School of Applied Sciences, University of Huddersfield, Huddersfield, United Kingdom
| | - Fabiola Tuccia
- School of Applied Sciences, University of Huddersfield, Huddersfield, United Kingdom
| | - Lara Maistrello
- Department of Life Sciences, University of Modena and Reggio Emilia, Reggio Emilia, Italy
| | - Stefano Vanin
- School of Applied Sciences, University of Huddersfield, Huddersfield, United Kingdom
| |
Collapse
|
14
|
Cooke T, Kulenkampff K, Heyns M, Heathfield LJ. DNA barcoding of forensically important flies in the Western Cape, South Africa. Genome 2018; 61:823-828. [DOI: 10.1139/gen-2018-0054] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Forensic entomology aids the determination of post mortem interval based on arthropods associated with a deceased body. This relies on the accurate identification of insects that visit the body, particularly first colonisers such as Calliphoridae (Diptera). Traditional species identification though morphological keys can be challenging as immature or closely related specimens can look similar. Some of these challenges have been overcome through “DNA barcoding”, which involves the sequencing of informative regions within a species’ DNA and comparison to a database of reference sequences. However, reference DNA sequences of blow fly species in South Africa is currently limited. In this study, adult blow flies representing four species common to the Western Cape, South Africa (Chrysomya chloropyga, Chrysomya albiceps, Chrysomya marginalis, Lucilia sericata) were examined using morphological keys and DNA barcoding of two regions: COI and ITS2. These DNA sequences were then used as references for the successful identification of seven unknown immature specimens. Intraspecific divergence showed a maximum of 0.36% and 2.25% for COI and ITS2, respectively; interspecific divergence showed a minimum of 6.14% and 64.6% for COI and ITS2, respectively. According to these results, COI and ITS2 have sufficient discriminatory power for species-level identification for the four species studied.
Collapse
Affiliation(s)
- Tenielle Cooke
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
| | - Kyle Kulenkampff
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
| | - Marise Heyns
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
| | - Laura Jane Heathfield
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
- Division of Forensic Medicine and Toxicology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Anzio Road, Observatory, Cape Town, South Africa
| |
Collapse
|
15
|
Sukontason KL, Bhoopat T, Wannasan A, Sontigun N, Sanit S, Amendt J, Samerjai C, Sukontason K. Chrysomya chani Kurahashi (Diptera: Calliphoridae), a blow fly species of forensic importance: morphological characters of the third larval instar and a case report from Thailand. Forensic Sci Res 2018; 3:83-93. [PMID: 30483655 PMCID: PMC6197134 DOI: 10.1080/20961790.2018.1428078] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 01/12/2018] [Indexed: 12/02/2022] Open
Abstract
Blow flies are worldwide the most important insects from a forensic point of view. In Thailand, aside from the two most common species, Chrysomya megacephala (F.) and Chrysomya rufifacies (Macquart), Chrysomya chani Kurahashi was also found to be of forensic importance. We present a case of a human female cadaver in its bloated stage of decomposition, discovered at Pachangnoi Subdistrict, northern Thailand. Entomological sampling during the autopsy displayed an assemblage of numerous dipteran larvae. Macroscopic observations showed the coexistence of third instar larvae of the three blow flies C. megacephala, Chrysomya villeneuvi Patton, an unknown blow fly species and one muscid, Hydrotaea sp. The minimum post-mortem interval was estimated to be six days, based on the developmental rate of C. megacephala. The ID of the unknown larva, which is the focus of this report, was revealed later as C. chani by DNA sequencing, using a 1205 bp of cytochrome c oxidase subunit I (COI). The occurrence of C. chani on a human body revealed the need to analyse and describe the morphology of its immature stage, to enable forensic entomologists to identify this fly species in future cases. The morphological examination of the third instar was performed, revealing peculiar characteristics: protuberant tubercles encircling abdominal segments; 9–11 lobes on the anterior spiracle; six prominent pairs of tubercles along the peripheral rim of the eighth abdominal segment; a heavily sclerotized complete peritreme of the posterior spiracles. A key to differentiate the third instar of blow flies of forensic importance in Thailand is provided.
Collapse
Affiliation(s)
- Kabkaew L Sukontason
- Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Tanin Bhoopat
- Department of Forensic Medicine, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Anchalee Wannasan
- Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Narin Sontigun
- Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Sangob Sanit
- Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Jens Amendt
- Institute of Legal Medicine, Forensic Biology/Entomology, Goethe-University Frankfurt, Frankfurt am Main, Germany
| | - Chutharat Samerjai
- Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Kom Sukontason
- Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand
| |
Collapse
|
16
|
Molecular Analysis of Forensically Important Blow Flies in Thailand. INSECTS 2018; 9:insects9040159. [PMID: 30413082 PMCID: PMC6315464 DOI: 10.3390/insects9040159] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 11/05/2018] [Accepted: 11/06/2018] [Indexed: 11/17/2022]
Abstract
Blow flies are the first insect group to colonize on a dead body and thus correct species identification is a crucial step in forensic investigations for estimating the minimum postmortem interval, as developmental times are species-specific. Due to the difficulty of traditional morphology-based identification such as the morphological similarity of closely related species and uncovered taxonomic keys for all developmental stages, DNA-based identification has been increasing in interest, especially in high biodiversity areas such as Thailand. In this study, the effectiveness of long mitochondrial cytochrome c oxidase subunit I and II (COI and COII) sequences (1247 and 635 bp, respectively) in identifying 16 species of forensically relevant blow flies in Thailand (Chrysomya bezziana, Chrysomya chani, Chrysomya megacephala, Chrysomya nigripes, Chrysomya pinguis, Chrysomya rufifacies, Chrysomya thanomthini, Chrysomya villeneuvi, Lucilia cuprina, Lucilia papuensis, Lucilia porphyrina, Lucilia sinensis, Hemipyrellia ligurriens, Hemipyrellia pulchra, Hypopygiopsis infumata, and Hypopygiopsis tumrasvini) was assessed using distance-based (Kimura two-parameter distances based on Best Match, Best Close Match, and All Species Barcodes criteria) and tree-based (grouping taxa by sequence similarity in the neighbor-joining tree) methods. Analyses of the obtained sequence data demonstrated that COI and COII genes were effective markers for accurate species identification of the Thai blow flies. This study has not only demonstrated the genetic diversity of Thai blow flies, but also provided a reliable DNA reference database for further use in forensic entomology within the country and other regions where these species exist.
Collapse
|
17
|
Shayya S, Debruyne R, Nel A, Azar D. Forensically Relevant Blow Flies in Lebanon Survey and Identification Using Molecular Markers (Diptera: Calliphoridae). JOURNAL OF MEDICAL ENTOMOLOGY 2018; 55:1113-1123. [PMID: 29762744 DOI: 10.1093/jme/tjy068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Indexed: 06/08/2023]
Abstract
Calliphoridae are among the first insects associated to decomposing animal remains. We have collected 1,841 specimens of three calliphorid genera: Calliphora, Lucilia, and Chrysomya, from different Lebanese localities as a first step in implementing a database of insects of forensic relevance for the country. Blow-flies are crucial for the estimation of the postmortem interval. DNA-based identification is a rapid and accurate method, often used for morphologically similar species, especially for immatures or incomplete specimens. In this study, we test the suitability of three genetic markers to identify adults and immature stages of calliphorids, viz., mitochondrial cytochrome c oxidase subunit I (COI) barcode, a region including partial sequences of mitochondrial Cyt-b-tRNAser-ND1, and second internal transcribed spacer (ITS2) region of nuclear ribosomal DNA. Forty Lebanese specimens of various developmental stages (egg, larva, wandering third instar, pupa, newly emerged adult, and mature adult) were identified among the three calliphorid genera: Calliphora, Lucilia, and Chrysomya, and compared with published sequences to confirm their specific assignation. Phylogenetic analyses showed the robustness of ITS2 and COI to identify calliphorids at species level. Nevertheless, ITS2 failed to discriminate Lucilia caesar (Linnaeus) (Diptera, Calliphoridae) from Lucilia illustris (Meigen) (Diptera, Calliphoridae), and COI had a similar issue with Lucilia sericata (Meigen) (Diptera, Calliphoridae) and Lucilia cuprina (Wiedemann) (Diptera, Calliphoridae). Thus, these two markers are complementary. This work contributes new nucleotide sequences for Lebanon. It is a first step in implementing a molecular database of forensic relevant insects for the country.
Collapse
Affiliation(s)
- Salman Shayya
- Institut de Systématique, Évolution, Biodiversité, ISYEB - UMR 7205 - CNRS, MNHN, UPMC, EPHE, Muséum national d'Histoire naturelle, Sorbonne Universités, CP, Entomologie, Paris, France
- Doctoral School of Science and Technology, Rafic Hariri University Campus, Hadath, Lebanon
- Lebanese Atomic Energy Commission, National Council of Scientific Research - Lebanon (CNRS-L)
- Department of Natural Sciences, Faculty of Sciences II, Lebanese University, Fanar - Matn, Lebanon
| | - Régis Debruyne
- Service de Systématique Moléculaire, UMS 2700 - CNRS, MNHN, Muséum National d'Histoire Naturelle, Sorbonne Universités, CP, Paris, France
| | - André Nel
- Institut de Systématique, Évolution, Biodiversité, ISYEB - UMR 7205 - CNRS, MNHN, UPMC, EPHE, Muséum national d'Histoire naturelle, Sorbonne Universités, CP, Entomologie, Paris, France
| | - Dany Azar
- State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing, Jiangsu, China
- Department of Natural Sciences, Faculty of Sciences II, Lebanese University, Fanar - Matn, Lebanon
| |
Collapse
|
18
|
Grzywacz A, Wyborska D, Piwczyński M. DNA barcoding allows identification of European Fanniidae (Diptera) of forensic interest. Forensic Sci Int 2017; 278:106-114. [DOI: 10.1016/j.forsciint.2017.06.023] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2017] [Revised: 06/19/2017] [Accepted: 06/20/2017] [Indexed: 11/26/2022]
|
19
|
Bharti M, Singh B. DNA-Based Identification of Forensically Important Blow Flies (Diptera: Calliphoridae) From India. JOURNAL OF MEDICAL ENTOMOLOGY 2017; 54:1151-1156. [PMID: 28419283 DOI: 10.1093/jme/tjx084] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Indexed: 06/07/2023]
Abstract
Correct species identification is the first and the most important criteria in entomological evidence-based postmortem interval (PMI) estimation. Although morphological keys are available for species identification of adult blow flies, keys for immature stages are either lacking or are incomplete. In this study, cytochrome oxidase subunit 1 (COI) reference data were developed from nine species (belonging to three subfamilies, namely, Calliphorinae, Luciliinae, and Chrysomyinae) of blow flies from India. Seven of the nine species included in this study were found suitable for DNA-based identification using COI gene, because they showed nonoverlapping intra- (0.0-0.3%) and inter-(1.96-18.14%) specific diversity, and formed well-supported monophyletic clade in phylogenetic analysis. The remaining two species (i.e., Chrysomya megacephala (Fabricius) and Chrysomya chani Kurahashi) cannot be distinguished reliably using our database because they had a very low interspecific diversity (0.11%), and Ch. megacephala was paraphyletic with respect to Ch. chani in the phylogenetic analysis. We conclude that the COI gene is a useful marker for DNA-based identification of blow flies from India.
Collapse
Affiliation(s)
- Meenakshi Bharti
- Department of Zoology and Environmental Sciences, Punjabi University, Patiala, Punjab 147002, India
| | - Baneshwar Singh
- Department of Forensic Science, Virginia Commonwealth University, Richmond, VA 23284
| |
Collapse
|
20
|
Meng F, Ren L, Wang Z, Deng J, Guo Y, Chen C, Finkelbergs D, Cai J. Identification of Forensically Important Blow Flies (Diptera: Calliphoridae) in China Based on COI. JOURNAL OF MEDICAL ENTOMOLOGY 2017; 54:1193-1200. [PMID: 28535279 DOI: 10.1093/jme/tjx105] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2016] [Indexed: 06/07/2023]
Abstract
Blow flies are among the most important insects in forensic entomology casework. Identification of blow fly species can be a time consuming and difficult task, especially at their early development stages. Present DNA-based technologies provide a promising identification method for these forensically important calliphorids. The cytochrome oxidase subunit I (COI) sequence has been applied as a suitable DNA marker in calliphorid identification for many years; however, limitation exists in using short sequence to determine genetically close species. In this study, COI long sequences were utilized in species-level identification. Seventy-two specimens were collected from 27 locations across 22 Chinese provinces, and unambiguously determined as 16 species under seven genera of Calliphoridae. Analysis of long mitochondrial COI sequence (1,021-1,382 bp) data from forensically relevant blow flies collected in the inland region of China provided a reliable marker for accurate identification. Our data provide genetic diversity and reference for global forensic-related blow fly species identification, and conductive meaning on future utilization of Chinese calliphorids used in forensic entomological practice.
Collapse
Affiliation(s)
- Fanming Meng
- Department of Histology and Embryology, School of Basic Medical Sciences, Central South University, Changsha 410078, Hunan, China
| | - Lipin Ren
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha 410013, Hunan, China
| | - Ziyue Wang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha 410013, Hunan, China
| | - Jianqiang Deng
- Department of Forensic Medicine, Hainan Medical University, Haikou, China
| | - Yadong Guo
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha 410013, Hunan, China
| | - Chao Chen
- Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing 100093, China
| | - Dmitrijs Finkelbergs
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha 410013, Hunan, China
| | - Jifeng Cai
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha 410013, Hunan, China
| |
Collapse
|
21
|
Yusseff-Vanegas SZ, Agnarsson I. DNA-barcoding of forensically important blow flies (Diptera: Calliphoridae) in the Caribbean Region. PeerJ 2017; 5:e3516. [PMID: 28761780 PMCID: PMC5531032 DOI: 10.7717/peerj.3516] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Accepted: 06/07/2017] [Indexed: 11/20/2022] Open
Abstract
Correct identification of forensically important insects, such as flies in the family Calliphoridae, is a crucial step for them to be used as evidence in legal investigations. Traditional identification based on morphology has been effective, but has some limitations when it comes to identifying immature stages of certain species. DNA-barcoding, using COI, has demonstrated potential for rapid and accurate identification of Calliphoridae, however, this gene does not reliably distinguish among some recently diverged species, raising questions about its use for delimitation of species of forensic importance. To facilitate DNA based identification of Calliphoridae in the Caribbean we developed a vouchered reference collection from across the region, and a DNA sequence database, and further added the nuclear ITS2 as a second marker to increase accuracy of identification through barcoding. We morphologically identified freshly collected specimens, did phylogenetic analyses and employed several species delimitation methods for a total of 468 individuals representing 19 described species. Our results show that combination of COI + ITS2 genes yields more accurate identification and diagnoses, and better agreement with morphological data, than the mitochondrial barcodes alone. All of our results from independent and concatenated trees and most of the species delimitation methods yield considerably higher diversity estimates than the distance based approach and morphology. Molecular data support at least 24 distinct clades within Calliphoridae in this study, recovering substantial geographic variation for Lucilia eximia, Lucilia retroversa, Lucilia rica and Chloroprocta idioidea, probably indicating several cryptic species. In sum, our study demonstrates the importance of employing a second nuclear marker for barcoding analyses and species delimitation of calliphorids, and the power of molecular data in combination with a complete reference database to enable identification of taxonomically and geographically diverse insects of forensic importance.
Collapse
Affiliation(s)
| | - Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, United States of America
| |
Collapse
|
22
|
GilArriortua M, Saloña-Bordas MI, Cainé LM, Pinheiro F, M de Pancorbo M. Technical Note: "Mitochondrial and nuclear DNA approaches for reliable identification of Lucilia (Diptera, Calliphoridae) species of forensic interest from Southern Europe". Forensic Sci Int 2015; 257:393-397. [PMID: 26544633 DOI: 10.1016/j.forsciint.2015.10.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Revised: 09/01/2015] [Accepted: 10/15/2015] [Indexed: 12/11/2022]
Abstract
In forensic entomology, rapid and unambiguous identification of blowfly species is a critical prerequisite for accurately estimating the post-mortem interval (PMI). The conventional diagnosis of cadaveric entomofauna based on external characters is hampered by the morphological similarities between species, especially in immature stages. Genetic analysis has been shown to allow precise and reliable diagnosis and delimitation of insect species. Nevertheless, the taxonomy of some species remains unresolved. This study was focused on improving the effectiveness and accuracy of analysis based on the widely used cytochrome c oxidase subunit I barcode region (COI barcode, 658 bp), complemented by other mitochondrial and nuclear regions, such as cytochrome b (Cyt-b, 307 bp) and the second internal transcribed spacer (ITS2, 310-331 bp), for the identification of Southern European blowflies. We analyzed a total of 209 specimens, collected from 38 human corpses, belonging to three Calliphoridae genera and seven species: Chrysomya (Ch. albiceps), Calliphora (C. vicina and C. vomitoria), and Lucilia (L. sericata, L. ampullacea, L. caesar and L. illustris). These species are the most common PMI indicators in Portugal. The results revealed that unambiguous separation of species of the Lucilia genus requires different loci from the barcode region. Furthermore, we conclude that the ITS2 (310-331 bp) molecular marker is a promising diagnostic tool because its inter-specific discriminatory power enables unequivocal and consistent distinctions to be made, even between closely related species (L. caesar-L. illustris). This work also contributes new genetic data that may be of interest in performing species diagnosis for Southern European blowflies. Notably, to the best of our knowledge, we provide the first records of the Cyt-b (307 bp) locus for L. illustris and the ITS2 (310-331 bp) region for Iberian Peninsula Lucilia species.
Collapse
Affiliation(s)
- Maite GilArriortua
- Dpto de Zoología y Biología Celular Animal. Facultad de Ciencia y Tecnología. Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain; BIOMICs Research Group. Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Centro de Investigación "Lascaray" Ikergunea, Avda. Miguel de Unamuno 3, 01006 Vitoria-Gasteiz, Spain
| | - Marta I Saloña-Bordas
- Dpto de Zoología y Biología Celular Animal. Facultad de Ciencia y Tecnología. Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain; BIOMICs Research Group. Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Centro de Investigación "Lascaray" Ikergunea, Avda. Miguel de Unamuno 3, 01006 Vitoria-Gasteiz, Spain
| | - Laura M Cainé
- Delegação do Norte do Instituto Nacional de Medicina Legal, Jardim Carrilho Videira, 4050-167 Porto, Portugal; Faculdade de Medicina da Universidade do Porto, Alameda Prof. Hernâni Monteiro, 4200-316 Porto, Portugal
| | - Fátima Pinheiro
- Delegação do Norte do Instituto Nacional de Medicina Legal, Jardim Carrilho Videira, 4050-167 Porto, Portugal
| | - Marian M de Pancorbo
- Dpto de Zoología y Biología Celular Animal. Facultad de Ciencia y Tecnología. Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain; BIOMICs Research Group. Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Centro de Investigación "Lascaray" Ikergunea, Avda. Miguel de Unamuno 3, 01006 Vitoria-Gasteiz, Spain.
| |
Collapse
|