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Holman AP, Peterson M, Linhart E, Kurouski D. Using surface-enhanced Raman spectroscopy to probe artificial dye degradation on hair buried in multiple soils for up to eight weeks. Sci Rep 2024; 14:6469. [PMID: 38499595 PMCID: PMC10948827 DOI: 10.1038/s41598-024-57147-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 03/14/2024] [Indexed: 03/20/2024] Open
Abstract
The discovery of clandestine burials poses unique challenges for forensic specialists, requiring diverse expertise to analyze remains in various states. Bones, teeth, and hair often endure the test of time, with hair particularly exposed to the external environment. While existing studies focus on the degradation of virgin hair influenced by soil pH and decomposition fluids, the interaction between artificial dyes on hair and soil remains underexplored. This paper introduces a novel approach to forensic hair analysis that is based on high-throughput, nondestructive, and non-invasive surface-enhanced Raman spectroscopy (SERS) and machine learning. Using this approach, we investigated the reliability of the detection and identification of artificial dyes on hair buried in three distinct soil types for up to eight weeks. Our results demonstrated that SERS enabled the correct prediction of 97.9% of spectra for five out of the eight dyes used within the 8 weeks of exposure. We also investigated the extent to which SERS and machine learning can be used to predict the number of weeks since burial, as this information may provide valuable insights into post-mortem intervals. We found that SERS enabled highly accurate exposure intervals to soils for specific dyes. The study underscores the high achievability of SERS in extrapolating colorant information from dyed hairs buried in diverse soils, with the suggestion that further model refinement could enhance its reliability in forensic applications.
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Affiliation(s)
- Aidan P Holman
- Department of Entomology, Texas A&M University, College Station, TX, 77843, USA
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, 77843, USA
| | - Mackenzi Peterson
- Department of Entomology, Texas A&M University, College Station, TX, 77843, USA
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, 77843, USA
| | - Emily Linhart
- Department of Entomology, Texas A&M University, College Station, TX, 77843, USA
| | - Dmitry Kurouski
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, 77843, USA.
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, 77843, USA.
- Institute for Advancing Health Through Agriculture, College Station, TX, 77843, USA.
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Liu Z, Simayijiang H, Wang Q, Yang J, Sun H, Wu R, Yan J. DNA and protein analyses of hair in forensic genetics. Int J Legal Med 2023; 137:613-633. [PMID: 36732435 DOI: 10.1007/s00414-023-02955-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 01/20/2023] [Indexed: 02/04/2023]
Abstract
Hair is one of the most common pieces of biological evidence found at a crime scene and plays an essential role in forensic investigation. Hairs, especially non-follicular hairs, are usually found at various crime scenes, either by natural shedding or by forcible shedding. However, the genetic material in hairs is usually highly degraded, which makes forensic analysis difficult. As a result, the value of hair has not been fully exploited in forensic investigations and trials. In recent years, with advances in molecular biology, forensic analysis of hair has achieved remarkable strides and provided crucial clues in numerous cases. This article reviews recent developments in DNA and protein analysis of hair and attempts to provide a comprehensive solution to improve forensic hair analysis.
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Affiliation(s)
- Zhiyong Liu
- Faculty of Forensic Medicine, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, 510080, People's Republic of China
| | - Halimureti Simayijiang
- School of Forensic Medicine, Shanxi Medical University, Jinzhong, Shanxi, 030600, People's Republic of China
| | - Qiangwei Wang
- Faculty of Forensic Medicine, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, 510080, People's Republic of China
| | - Jingyi Yang
- Faculty of Forensic Medicine, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, 510080, People's Republic of China
| | - Hongyu Sun
- Faculty of Forensic Medicine, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, 510080, People's Republic of China.,Guangdong Province Translational Forensic Medicine Engineering Technology Research Center, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, 510080, People's Republic of China
| | - Riga Wu
- Faculty of Forensic Medicine, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, 510080, People's Republic of China. .,Guangdong Province Translational Forensic Medicine Engineering Technology Research Center, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, 510080, People's Republic of China.
| | - Jiangwei Yan
- School of Forensic Medicine, Shanxi Medical University, Jinzhong, Shanxi, 030600, People's Republic of China.
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Canale LC, McElhoe JA, Dimick G, DeHeer KM, Beckert J, Holland MM. Routine Mitogenome MPS Analysis from 1 and 5 mm of Rootless Human Hair. Genes (Basel) 2022; 13:2144. [PMID: 36421819 PMCID: PMC9690917 DOI: 10.3390/genes13112144] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Accepted: 11/14/2022] [Indexed: 08/16/2023] Open
Abstract
While hair shafts are a common evidence type in forensic cases, they are often excluded from DNA analysis due to their limited DNA quantity and quality. Mitochondrial (mt) DNA sequencing is the method of choice when working with rootless hair shaft fragments due to the elevated copy number of mtDNA and the highly degraded nature of nuclear (n) DNA. Using massively parallel sequencing (MPS) of the mitochondrial (mito) genome, we studied the impact of hair age (time since collection) and physical characteristics (hair diameter, medullary structure, and length of hair tested) on mtDNA recovery and MPS data quality. Hair shaft cuttings of 1 and 5 mm from hairs less than five years to 46 years of age from 60 donors were characterized microscopically. Mitogenome sequences were generated using the Promega PowerSeqTM Whole Mito System prototype kit and the Illumina MiSeq instrument. Reportable mitogenome sequences were obtained from all hairs up to 27 years of age (37 donors), with at least 98% of the mitogenome reported for more than 94% of the 74 hair samples analyzed; the minimum reported sequence was 88%. Furthermore, data from the 1 and 5 mm replicates gave concordant haplotypes. As expected, mtDNA yield decreased, mtDNA degradation increased, and mitogenome MPS data quality declined as the age of the hair increased. Hair diameter and medullary structure had minimal impact on yield and data quality. Our findings support that MPS is a robust and reliable method for routinely generating mitogenome sequences from 1 and 5 mm hair shaft samples up to 27 years of age, which is of interest to the forensic community, biological anthropologists, and medical geneticists.
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Affiliation(s)
- Lauren C. Canale
- Forensic Science Program, Department of Biochemistry & Molecular Biology, Eberly College of Science, Pennsylvania State University, University Park, PA 16802, USA
| | - Jennifer A. McElhoe
- Forensic Science Program, Department of Biochemistry & Molecular Biology, Eberly College of Science, Pennsylvania State University, University Park, PA 16802, USA
| | - Gloria Dimick
- Mitotyping Technologies, 2565 Park Center Blvd., Suite 200, State College, PA 16801, USA
| | | | - Jason Beckert
- Microtrace 790 Fletcher Drive, Suite 106, Elgin, IL 60123, USA
| | - Mitchell M. Holland
- Forensic Science Program, Department of Biochemistry & Molecular Biology, Eberly College of Science, Pennsylvania State University, University Park, PA 16802, USA
- Mitotyping Technologies, 2565 Park Center Blvd., Suite 200, State College, PA 16801, USA
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Scurich N, Garrett BL, Thompson RM. Surveying practicing firearm examiners. Forensic Sci Int Synerg 2022; 4:100228. [PMID: 35510144 PMCID: PMC9058961 DOI: 10.1016/j.fsisyn.2022.100228] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Revised: 04/08/2022] [Accepted: 04/11/2022] [Indexed: 12/01/2022]
Abstract
A sample (n = 79) of practicing firearm and toolmark examiners was queried about casework as well as their views about the potential role that statistics might play in future firearm examinations and expert witness testimony. Principal findings include: The modal response for time spent conducting bullet examinations is 2–4 hours, and the modal response for cartridge casings is 1–2 hours. The average participant (median) makes an identification in 65% of casework, makes an elimination in 12% of casework, and reports that the examination was inconclusive in 20% of casework calls. The vast majority of examiners work at laboratories that permit eliminations when class characteristics agree. The reported industry-wide false positive error rate is 1%, though very few participants could name a study or give a citation for their reported estimate. Qualitative responses about the potential role of statistics were mixed.
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Lee LC, Jemain AA. On overview of PCA application strategy in processing high dimensionality forensic data. Microchem J 2021. [DOI: 10.1016/j.microc.2021.106608] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Wilkinson L, Bailey JW, Gwinnett C. The creation of an assessment tool for the analysis of two forms of heat damage in animal hair. Forensic Sci Int 2020; 312:110265. [PMID: 32473524 DOI: 10.1016/j.forsciint.2020.110265] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 03/17/2020] [Accepted: 03/18/2020] [Indexed: 11/19/2022]
Abstract
Animal cruelty cases can involve a variety of mistreatment to domestic animals. A common source of abuse is the use of heat sources, such as ovens, hot surfaces and microwaves. Analysis of damage to skin by a veterinarian is a key aspect of these investigations but additional information can be provided by observing the hair of the animal, including heat source type and exposure time. This study developed an objective grading system for the analysis of heat damage in hairs which can be used to quantify different damage characteristics including bubbling, discolouration, expansion of hair, fractures, changes to the medulla and scales and scale removal/melting. This grading scheme was applied to the investigation of dog (Canis familiaris) skin samples with full pelage and loose hairs exposed to microwaves and a heated environment in order to identify any distinguishing damage characteristics from the two different heated environments. Samples were exposed to a furnace for 1min at different temperature ranges (50-350°C with 50°C intervals) and also a microwave at maximum power for different time periods (15, 30, 45, 60, 120, 180, 240 and 300s). Hairs were extracted for examination using high powered light microscopy and scanning electron microscopy. Overall, it can be determined that the type of damage observed is influenced by the nature of heat applied and the context and substrate in which the hair is situated at the time of exposure. Using principal component analysis (PCA) it was concluded that as temperature increases in a furnace so does the severity of each of the damage characteristics observed. It can be noted that with furnace exposure, any one of the characteristics could be used to indicate the temperature to which it has been exposed. For furnace exposed samples there was no significant difference between loose or embedded hairs. PCA analysis determined that there are two independent forms of damage that occur when hairs are exposed to microwave radiation, these are: increased bubbling and discolouration in the root and increased bubbling and discolouration of the shaft and tip. Exposure time is correlated with both the root and shaft/tip observations. The results indicated some clear distinctions between heat source and exposure useful for the objective interpretation of such evidence. This standardised approach for the observation of heat damage characteristics in animal hair provides investigators with a tool to differentiate between methods of abuse, providing a greater understanding of the crime committed.
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Affiliation(s)
- Laura Wilkinson
- Criminal Justice and Forensic Department, Staffordshire University, The Science Centre, Leek Road, Stoke on Trent, ST4 2DF, England, United Kingdom.
| | - J William Bailey
- University of Salford, Salford Crescent, Salford, England, M54WT, United Kingdom.
| | - Claire Gwinnett
- Criminal Justice and Forensic Department, Staffordshire University, The Science Centre, Leek Road, Stoke on Trent, ST4 2DF, England, United Kingdom.
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