Dead end for endemic plant species? A biodiversity hotspot under pressure

Multispectral analysis-ready satellite data for three East African mountain ecosystems

The East African mountain ecosystems are facing increasing threats due to global change, putting their unique socio-ecological systems at risk. To monitor and understand these changes, researchers and stakeholders require accessible analysis-ready remote sensing data. Although satellite data is available for many applications, it often lacks accurate geometric orientation and has extensive cloud cover. This can generate misleading results and make it unreliable for time-series analysis. Therefore, it needs comprehensive processing before usage, which encompasses multi-step operations, requiring large computational and storage capacities, as well as expert knowledge. Here, we provide high-quality, atmospherically corrected, and cloud-free analysis-ready Sentinel-2 imagery for the Bale Mountains (Ethiopia), Mounts Kilimanjaro and Meru (Tanzania) ecosystems in East Africa. Our dataset ranges from 2017 to 2021 and is provided as monthly and annual aggregated products together with 24 spectral indices. Our dataset enables researchers and stakeholders to conduct immediate and impactful analyses. These applications can include vegetation mapping, wildlife habitat assessment, land cover change detection, ecosystem monitoring, and climate change research.

Climate-driven convergent evolution in riparian ecosystems on sky islands

Climate-induced evolution will determine population persistence in a changing world. However, finding natural systems in which to study these responses has been a barrier to estimating the impact of global change on a broad scale. We propose that isolated sky islands (SI) and adjacent mountain chains (MC) are natural laboratories for studying long-term and contemporary climatic pressures on natural populations. We used greenhouse common garden trees to test whether populations on SI exposed to hot and dry climates since the end of the Pleistocene have phenotypically diverged from populations on MC, and if SI populations have converged in these traits. We show: (1) populations of Populus angustifolia from SI have diverged from MC, and converged across SI, in reproductive and productivity traits, (2) these traits (cloning and aboveground biomass, respectively) are significantly correlated, suggesting a genetic linkage between them, and (3) the trait variation is driven by both natural selection and genetic drift. These shifts represent potentially beneficial phenotypes for population persistence in a changing world. These results suggest that the SI-MC comparison is a natural laboratory, as well as a predictive framework, for studying long-term responses to climate change across the globe.

Why we should be looking for longitudinal patterns in biodiversity

Our understanding of global diversity patterns relies overwhelmingly on ecological and evolutionary correlates of latitude, and largely ignores longitude. However, the two major explanations of biodiversity patterns – energy and stability – are confounded across latitudes, and longitude offers potential solutions. Recent literature shows that the global biogeography of the Cenozoic world is structured by longitudinal barriers. In a few well-studied regions, such as South Africa’s Cape, the Himalayas and the Amazon-Andes continuum, there are strong longitudinal gradients in biodiversity. Often, such gradients occur where high and low past climatic velocities are juxtaposed, and there is clear evidence of higher biodiversity at the climatically-stable end. Understanding longitudinal biodiversity variations more widely can offer new insights towards biodiversity conservation in the face of anthropogenic climatic change.

Spatial and temporal changes in moth assemblages along an altitudinal gradient, Jeju-do island

Montane species on islands attract attention due to their small and isolated populations and limited dispersal potential, making them vulnerable to extinction. We investigated the diversity pattern of moth assemblages over the 12-years-period (2009-2020) at 11 study plots on an island mountain (Mount Hallasan, Jeju-do Island, South Korea) to assess the changes in the moth assemblages in terms of species composition, richness, and abundances. We expected to find a decline in the number of species at these sites, given the reported decline in similar taxa in other temperate regions, such as Europe and North America. In contrast, we found that the numbers of species and individuals of moth populations on the island mountain have not significantly changed, except at the high-elevation sites, where the number of species has increased. Our results also show that the numbers of species and individuals are closely related to energy availability, actual evapotranspiration. Moreover, we found that the species composition during the study period has not been greatly changed, except at the lowermost and uppermost elevations. The mechanism driving this high dissimilarity of moth assemblages differed: the low-elevation site experienced high temporal turnover, and the high elevation sites also experienced high temporal turnover and nestedness resulting from active species replacement due to a recent forest fire and vegetation changes and the geographic and ecological constraints of the high elevations. To date, the moth species diversity of the temperate forests of the island mountain is not showing a drastic change. However, we observed that the moth assemblages had changed the number of species and individuals at low and high elevations. Given the biological and ecological limitations of moths (ectothermic organisms with limited habitat range) and considering the results of our study, we infer that climate change has impacted the diversity and species composition of moths on the island mountain.

Are degraded karst tiankengs coupled with microclimatic underground forests the refugia of surface flora? Evidence from China’s Yunnan

Karst tiankengs, as one of the most magnificent negative topographies, are capable of forming a bank for species diversity conservation easily. More than 300 karst tiankengs have been discovered and identified worldwide. Given its treacherous terrain, although original karst tiankeng were identified as species refuges, the broader distribution of degraded karst tiankeng has not been systematically studied. Our study area comprised the degraded karst tiankeng cluster immersed in the fragmented karst forests of Yunnan, China. Fifty-eight plant samples were selected from karst tiankengs and surface. We compared species composition, and analyzed diversity indices and similarity coefficients to verify the isolation effect of karst tiankengs on floras. The results indicated that: (1) In the degraded karst tiankeng, there were 24 families, 37 genera and 48 species in the tree layer and 27 families, 43 genera and 49 species in the shrub layer. Outside the degraded karst tiankengs, 20 families, 31 genera and 39 species were in the tree layer, and the shrub layer included 26 families, 44 genera and 55 species. (2) The species composition reached significant differences within and outside degraded karst tiankeng (p < 0.05) based on the analysis of variance (ANOVA). (3) In the degraded karst tiankeng, species richness/diversity in trees were higher than those in the shrub layer, while at the surface, shrubs had higher richness and lower diversity than trees by Alpha-diversity index. And for Beta-diversity index, species similarity among degraded karst tiankengs (0.215) was extremely dissimilar, which was even lower than the contrast within and outside the degraded karst tiankengs (0.272). (4) Shared species ranged from 1 to 5 among the four habitats, with high variability in plant species across the habitat matrices. Through a comparative analysis of systematic biodiversity methods, we found that the degraded karst tiankengs, an independent type of karst tiankeng, are the unreported refugia. Species records in degraded karst tiankeng cluster will contribute to plant diversity conservation and resource management, and to the linkage with broader China’s karst floras. Karst tiankeng botanical habitats possess not only biodiversity value for in situ conservation, but will further support the ecological recovery of surface flora. While its mechanism needs to be further revealed.

Little hope for the polyploid endemic Pyrenean Larkspur ( Delphinium montanum ): Evidences from population genomics and Ecological Niche Modeling

Species endemic to restricted geographical ranges represent a particular conservation issue, be it for their heritage interest. In a context of global change, this is particularly the case for plants which belong to high‐mountain ecosystems and, because of their ecological requirements, are doomed to survive or disappear on their “sky islands”. The Pyrenean Larkspur (Delphinium montanum, Ranunculaceae) is endemic to the Eastern part of the Pyrenees (France and Spain). It is now only observable at a dozen of localities and some populations show signs of decline, such as a recurrent lack of flowering. Implementing population genomics approach (e.g., RAD‐seq like) is particularly useful to understand genomic patterns of diversity and differentiation in order to provide recommendations in term of conservation. However, it remains challenging for species such as D. montanum that are autotetraploid with a large genome size (1C‐value >10 pg) as most methods currently available were developed for diploid species. A Bayesian framework able to call genotypes with uncertainty allowed us to assess genetic diversity and population structure in this system. Our results show evidence for inbreeding (mean G_IS = 0.361) within all the populations and substantial population structure (mean G_ST = 0.403) at the metapopulation level. In addition to a lack of connectivity between populations, spatial projections of Ecological Niche Modeling (ENM) analyses under different climatic scenarios predict a dramatic decrease of suitable habitat for D. montanum in the future. Based on these results, we discuss the relevance and feasibility of different conservation measures.

Environmental variables drive plant species composition and distribution in the moist temperate forests of Northwestern Himalaya, Pakistan

By assessing plant species composition and distribution in biodiversity hotspots influenced by environmental gradients, we greatly advance our understanding of the local plant community and how environmental factors are affecting these communities. This is a proxy for determining how climate change influences plant communities in mountainous regions ("space-for-time" substitution). We evaluated plant species composition and distribution, and how and which environmental variables drive the plant communities in moist temperate zone of Manoor valley of Northwestern Himalaya, Pakistan. During four consecutive years (2015-2018), we sampled 30 sampling sites, measuring 21 environmental variables, and recording all plant species present in an altitudinal variable range of 1932-3168 m.a.s.l. We used different multivariate analyses to identify potential plant communities, and to evaluate the relative importance of each environmental variable in the species composition and distribution. Finally, we also evaluated diversity patterns, by comparing diversity indices and beta diversity processes. We found that (i) the moist temperate zone in this region can be divided in four different major plant communities; (ii) each plant community has a specific set of environmental drivers; (iii) there is a significant variation in plant species composition between communities, in which six species contributed most to the plant composition dissimilarity; (iv) there is a significant difference of the four diversity indices between communities; and (v) community structure is twice more influenced by the spatial turnover of species than by the species loss. Overall, we showed that altitudinal gradients offer an important range of different environmental variables, highlighting the existence of micro-climates that drive the structure and composition of plant species in each micro-region. Each plant community along the altitudinal gradient is influenced by a set of environmental variables, which lead to the presence of indicator species in each micro-region.

Ericaceous vegetation of the Bale Mountains of Ethiopia will prevail in the face of climate change

Climate change impacts the structure, functioning, and distribution of species and ecosystems. It will shift ecosystem boundaries, potentially affecting vulnerable ecosystems, such as tropical Africa's high mountain ecosystems, i.e., afroalpine ecosystems, and their highly susceptible uniquely adapted species. However, ecosystems along these mountains are not expected to respond similarly to the change. The ericaceous woody vegetation, located between the low-elevation broadleaf forests and high-elevation afroalpine vegetation, are anticipated to be affected differently. We hypothesize that projected climate change will result in an upward expansion and increasing dominance of ericaceous vegetation, which will negatively impact the endemic rich afroalpine ecosystems of the extensive Sanetti plateau. Hence, we modeled the impact of future climate change on the distribution of ericaceous vegetation and discussed its effect on bordering ecosystems in the Bale Mountains. We applied four familiar correlative modeling approaches: bioclim, domain, generalized linear methods, and support vector machines. We used WorldClim’s bioclimatic variables as environmental predictors and two representative concentration pathways (RCPs) of the IPCC Fifth Assessment Report climate change scenarios, namely RCP4.5 and RCP8.5 for future climate projection. The results indicate increased ericaceous vegetation cover on the midaltitude of northwestern and northern parts of the massif, and the Sanetti plateau. We observed upward range expansion and increase of close ericaceous vegetation in midaltitudes, while receding from the lower range across the massif. Moreover, the current ericaceous vegetation range correlates to the temperature and precipitation trends, reaffirming the critical role of temperature and precipitation in determining species distributions along elevational gradients. The results indicate the high likelihood of considerable changes in this biodiversity hotspot in Eastern Africa.

Ecological responses to variation in seasonal snow cover

Seasonal snow is among the most important factors governing the ecology of many terrestrial ecosystems, but rising global temperatures are changing snow regimes and driving widespread declines in the depth and duration of snow cover. Loss of the insulating snow layer will fundamentally change the environment. Understanding how individuals, populations, and communities respond to different snow conditions is thus essential for predicting and managing future ecosystem change. We synthesized 365 studies that examined ecological responses to variation in winter snow conditions. This research encompasses a broad range of methods (experimental manipulations, measurement of natural snow gradients, and long-term monitoring), locations (35 countries), study organisms (plants, mammals, arthropods, birds, fish, lichen, and fungi), and response measures. Earlier snowmelt was consistently associated with advanced spring phenology in plants, mammals, and arthropods. Reduced snow depth often increased mortality or physical injury in plants, although there were few clear effects on animals. Neither snow depth nor snowmelt timing had clear or consistent directional effects on body size of animals or biomass of plants. However, because 96% of studies were from the northern hemisphere, the generality of these trends across ecosystems and localities is also unclear. We identified substantial research gaps for several taxonomic groups and response types; research on wintertime responses was notably scarce. Future research should prioritize examination of the mechanisms underlying responses to changing snow conditions and the consequences of those responses for seasonally snow-covered ecosystems.

Diversity and Distribution Patterns of Endemic Medicinal and Aromatic Plants of Iran: Implications for Conservation and Habitat Management

Iran, with its unique climatic and topographic conditions, is home to about 8200 species of vascular plants. Approximately 2300 of the 8200 species are popularly characterized as medicinal or aromatic. Here, we compile information about the endemic medicinal and aromatic plants (MAPs) of Iran and map their distributions. Our survey found 180 endemic species of MAPs, belonging to 10 families and 30 genera. The majority of species are found in Lamiaceae, Fabaceae, and Apiaceae, with 86, 30, and 18 species, respectively. Approximately 70% of these plants have been recorded in the 10 provinces of Esfahan, Kerman, Fars, Tehran, Chaharmahal va Bakhtiari, East Azarbaijan, Lorestan, West Azarbaijan, Hamadan, and Mazandaran. These provinces are located in the Iran-o-Turanian region, one of the three major phytogeographic regions in Iran, which covers five areas of endemism (i.e., Azarbaijan, Zagros, Kopet Dagh-Khorassan, Alborz, and Central Alborz). So, Iran-o-Turanian region is the main center of diversity for the Iranian endemic MAPs. The north, center and western parts of Iran are rich in MAPs and could be considered as the dominant biodiversity hotspots of Iran more seemingly due to the diverse climatic and geographic assortment which generates the highest frequency and distribution of MAPs. Many of these MAPs are at the edge of extinction due to the unwise, unscientific harvesting and/or global climate change. Therefore, there is an urgent need to conserve and propagate some of these important MAPs to save them from extinction and also to ensure the availability of raw materials for their use and future research into their efficacy. Furthermore, identifying the areas of endemism (AEs) is an essential part of ongoing regional conservation management programs in Iran and worldwide.

Analysis of Near-Surface Temperature Lapse Rates in Mountain Ecosystems of Northern Mexico Using Landsat-8 Satellite Images and ECOSTRESS

Mountain ecosystems provide environmental goods, which can be threatened by climate change. Near-Surface Temperature Lapse Rate (NSTLR) is an essential factor used for thermal and hydrological analysis in mountain ecosystems. The aims of the present study were to estimate NSTLR and to identify its relationship with aspect, Local solar zenith angle (LSZA) and Evaporative Stress Index (ESI) for two seasons of the year in a mountain ecosystem at the North of Mexico. Normalized Land Surface Temperature (NLST) was estimated using environmental and topographical variables. LSZA was calculated from slope to consider the effect of solar position. NSTLR was estimated through simple linear models. Observed NSTLR was 9.4 °C km−1 for the winter and 14.3 °C km−1 for the summer. Our results showed variation in NSTLR by season. In addition, aspect, LSZA and ESI also influenced NSTLR regulation. In addition, Northwest and West aspects exhibited the highest NSTLR. LSZA angles closest to 90° were related with a decrease in NSTLR for both seasons. Finally, ESI values associated with less evaporative stress were related to lower NSTLR. These results suggest potential of Landsat-8 LST and ECOSTRESS ESI to capture interactions of temperature, topography, and water stress in complex ecosystems.

Classification and Characterization of the Manoor Valley's (Lesser Himalaya) Vegetation from the Subtropical-Temperate Ecotonal Forests to the Alpine Pastures along Ecological Variables

Plant species are distributed in different types of habitats, forming different communities driven by different sets of environmental variables. Here, we assessed potential plant communities along an altitudinal gradient and their associations with different environmental drivers in the unexplored Manoor Valley (Lesser Himalaya), Pakistan. We have implemented various ecological techniques and evaluated phytosociological attributes in three randomly selected 50 m-transects within each stand (a total of 133) during different seasons for four years (2015-2018). This phytosociological exploration reported 354 plant species representing 93 different families. The results revealed that the Therophytic life form class dominated the flora, whereas Nanophyll dominated the leaf size spectra. There were a total of twelve plant communities identified, ranging from the lowest elevations to the alpine meadows and cold deserts. The maximum number of species were found in Cedrus-Pinus-Parrotiopsis community (197 species), in the middle altitudinal ranges (2292-3168 m). Our results showed that at high altitudes, species richness was reduced, whereas an increase in soil nutrients was linked to progression in vegetation indicators. We also found different clusters of species with similar habitats. Our study clearly shows how altitudinal variables can cluster different plant communities according to different microclimates. Studies such as ours are paramount to better understanding how environmental factors influence ecological and evolutionary aspects.

Nowhere to escape – Diversity and community composition of ferns and lycophytes on the highest mountain in Honduras

IPCC predictions for Honduras indicate that temperature will increase by up to 3–6°C and precipitation will decrease by up to 7–13% by the year 2050. To better understand how fern and lycophyte communities might be affected by climate change, we comprehensively surveyed the community compositions of ferns and lycophytes at Celaque National Park, the highest mountain in Honduras. We surveyed a total of 80 20 × 20 m2 plots along an altitudinal gradient of 1249–2844 m a.s.l., identifying all species and estimating their abundances. We recorded a total of 11,098 individuals from 160 species and 61 genera. Community composition was strongly influenced by changes in altitude, precipitation and the abundance of bryophytes (a proxy for air humidity). Of the 160 species, 63 are expected, under a RCP2.6 scenario for the year 2050, to shift their range fully or partially above the maximum altitude of the mountain. Of these, 65.1% are epiphytes. We found that species with narrow altitudinal ranges at high altitudes were more at risk. Our study indicated that conservation efforts should prioritise higher altitudinal sites, focusing particularly on preserving the vulnerable epiphytic fern species, which are likely to be at greater risk.

How mountains and elevations shape the spatial distribution of beetles in Peninsular Malaysia

This study was conducted to assess the spatial distribution of beetles in mountain ecosystems and their elevational diversity. Malaise, pitfall and light traps were used to collect beetles from nine different mountains in Malaysia from September 2014 to September 2016, where from Gunung Angsi, Gunung Belumut, Gunung Basor and Gunung Tebu samples were collected at 500 m and 1000 m (above sea level) elevations, while beetles were sampled at 500 m, 1000 m and 1500 masl from Gunung Benom, Gunung Inas, Cameron Highland, Gunung Besar Hantu and Gunung Basor. In this study, 9628 beetles belonging to 879 different species were collected with highest representation from family Staphylinidae and Carabidae. Chamah Highland had the highest beetle diversity followed by Gunung Benom, Gunung Inas, Cameron Highland, Gunung Belumut, and Gunung Basor. Chamah Highland was different to all mountains on abundance and species richness. The highest species richness was observed at 1000 m, followed by 500 m and 1500 m. We identified characteristic species associated with habitat conditions at Gunung Benoum and Gunung Inas mountains, according to INDVAL values. The beetle diversity of the sampled mountains showed multiple alpha and beta patterns according to type of mountain ecosystem and elevation, providing guidelines for the scientific community to underpin conservation efforts in Malaysia.

Ethiopian vegetation types, climate and topography

Ethiopia is land of geographical contrasts with elevations that range from 125 m below sea level in the Danakil Depression to 4533 m above sea level in the Semien Mountains, a world heritage site. The diverse climate of various ecological regions of the country has driven the establishment of diverse vegetation, which range from Afroalpine vegetation in the mountains to the arid and semi-arid vegetation type in the lowlands. The formation of Ethiopian vegetation is highly connected to the climate and geological history of the country. Highland uplift and rift formation due to volcanic forces formed novel habitats with different topography and climatic conditions that have ultimately become drivers for vegetation diversification. Due to Ethiopia's connection with the temperate biome in the north and the Arabian Peninsula during the dry glacial period, the biotic assemblage of Ethiopian highlands consists of both Afrotropical and palearctic biota. In general, eight distinct vegetation types have been identified in Ethiopia, based mainly on elevation and climate gradients. These vegetation types host their own unique species, but also share several common species. Some of the vegetation types are identified as centers of endemism and have subsequently been identified globally as the East African Afromontane hotspot. Ethiopia is biologically rich, with more than 6500 vascular plant species. Of these species, 12% are endemic mainly due to geographical isolation and unique climatic conditions. However, researchers have yet to extensively investigate the ecology, phenology, as well as the evolutionary, genetics, and conservation status of Ethiopian vegetations at community and species level over space and time. This lack of research is a barrier to achieving the goal of zero global plant extinctions. Taxa extinction risk assessment has not been extensively carried out for majority of Ethiopian species. Detailed research is needed to explore how vegetation and species respond to rapidly growing environmental change. Currently, human-induced climate change and habitat fragmentation are severely threatening the country's biodiversity, and the consequences of these effects have not been studied at large. Furthermore, we still lack scientific evidence on how micro- and macro-ecological and evolutionary processes have been shaping vegetation structures in this climatically, topographically, and geologically diverse country. These gaps in our knowledge represent an opportunity for ecologists, geneticists, evolutionary biologists, conservation biologists, and other experts to investigate the biodiversity status and the complex ecological processes involved in structuring vegetation dynamics so as to help take effective conservation actions.

Global variation in the thermal tolerances of plants

Thermal macrophysiology is an established research field that has led to well-described patterns in the global structuring of climate adaptation and risk. However, since it was developed primarily in animals, we lack information on how general these patterns are across organisms. This is alarming if we are to understand how thermal tolerances are distributed globally, improve predictions of climate change, and mitigate effects. We approached this knowledge gap by compiling a geographically and taxonomically extensive database on plant heat and cold tolerances and used this dataset to test for thermal macrophysiological patterns and processes in plants. We found support for several expected patterns: Cold tolerances are more variable and exhibit steeper latitudinal clines and stronger relationships with local environmental temperatures than heat tolerances overall. Next, we disentangled the importance of local environments and evolutionary and biogeographic histories in generating these patterns. We found that all three processes have significantly contributed to variation in both heat and cold tolerances but that their relative importance differs. We also show that failure to simultaneously account for all three effects overestimates the importance of the included variable, challenging previous conclusions drawn from less comprehensive models. Our results are consistent with rare evolutionary innovations in cold acclimation ability structuring plant distributions across biomes. In contrast, plant heat tolerances vary mainly as a result of biogeographical processes and drift. Our results further highlight that all plants, particularly at mid-to-high latitudes and in their nonhardened state, will become increasingly vulnerable to ongoing climate change.