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Zhang X, Lai C, Liu M, Xue X, Zhang S, Chen Y, Xiao X, Zhang Z, Chen Y, Lai Z, Lin Y. Whole Genome Analysis of SLs Pathway Genes and Functional Characterization of DlSMXL6 in Longan Early Somatic Embryo Development. Int J Mol Sci 2022; 23:ijms232214047. [PMID: 36430536 PMCID: PMC9695034 DOI: 10.3390/ijms232214047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 11/10/2022] [Accepted: 11/11/2022] [Indexed: 11/16/2022] Open
Abstract
Strigolactones (SLs), a new class of plant hormones, are implicated in the regulation of various biological processes. However, the related family members and functions are not identified in longan (Dimocarpus longan Lour.). In this study, 23 genes in the CCD, D27, and SMXL family were identified in the longan genome. The phylogenetic relationships, gene structure, conserved motifs, promoter elements, and transcription factor-binding site predictions were comprehensively analysed. The expression profiles indicated that these genes may play important roles in longan organ development and abiotic stress responses, especially during early somatic embryogenesis (SE). Furthermore, GR24 (synthetic SL analogue) and Tis108 (SL biosynthesis inhibitor) could affect longan early SE by regulating the levels of endogenous IAA (indole-3-acetic acid), JA (jasmonic acid), GA (gibberellin), and ABA (abscisic acid). Overexpression of SMXL6 resulted in inhibition of longan SE by regulating the synthesis of SLs, carotenoids, and IAA levels. This study establishes a foundation for further investigation of SL genes and provides novel insights into their biological functions.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Zhongxiong Lai
- Correspondence: (Z.L.); (Y.L.); Tel.: +86-0591-83789484 (Y.L.); Fax: +86-0591-83789484 (Y.L.)
| | - Yuling Lin
- Correspondence: (Z.L.); (Y.L.); Tel.: +86-0591-83789484 (Y.L.); Fax: +86-0591-83789484 (Y.L.)
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Ebeed HT. Genome-wide analysis of polyamine biosynthesis genes in wheat reveals gene expression specificity and involvement of STRE and MYB-elements in regulating polyamines under drought. BMC Genomics 2022; 23:734. [PMID: 36309637 PMCID: PMC9618216 DOI: 10.1186/s12864-022-08946-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 10/10/2022] [Indexed: 11/11/2022] Open
Abstract
Background Polyamines (PAs) are considered promising biostimulants that have diverse key roles during growth and stress responses in plants. Nevertheless, the molecular basis of these roles by PAs has not been completely realized even now, and unfortunately, the transcriptional analyses of the biosynthesis pathway in various wheat tissues have not been investigated under normal or stress conditions. In this research, the findings of genome-wide analyses of genes implicated in the PAs biosynthesis in wheat (ADC, Arginine decarboxylase; ODC, ornithine decarboxylase; AIH, agmatine iminohydrolase; NPL1, Nitrlase like protein 1; SAMDC, S-adenosylmethionine decarboxylase; SPDS, spermidine synthase; SPMS, spermine synthase and ACL5, thermospermine synthase) are shown. Results In total, thirty PAs biosynthesis genes were identified. Analysis of gene structure, subcellular compartmentation and promoters were discussed. Furthermore, experimental gene expression analyses in roots, shoot axis, leaves, and spike tissues were investigated in adult wheat plants under control and drought conditions. Results revealed structural similarity within each gene family and revealed the identity of two new motifs that were conserved in SPDS, SPMS and ACL5. Analysis of the promoter elements revealed the incidence of conserved elements (STRE, CAAT-box, TATA-box, and MYB TF) in all promoters and highly conserved CREs in >80% of promoters (G-Box, ABRE, TGACG-motif, CGTCA-motif, as1, and MYC). The results of the quantification of PAs revealed higher levels of putrescine (Put) in the leaves and higher spermidine (Spd) in the other tissues. However, no spermine (Spm) was detected in the roots. Drought stress elevated Put level in the roots and the Spm in the leaves, shoots and roots, while decreased Put in spikes and elevated the total PAs levels in all tissues. Interestingly, PA biosynthesis genes showed tissue-specificity and some homoeologs of the same gene family showed differential gene expression during wheat development. Additionally, gene expression analysis showed that ODC is the Put biosynthesis path under drought stress in roots. Conclusion The information gained by this research offers important insights into the transcriptional regulation of PA biosynthesis in wheat that would result in more successful and consistent plant production. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-022-08946-2.
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Lai C, Zhou X, Zhang S, Zhang X, Liu M, Zhang C, Xu X, Xu X, Chen X, Chen Y, Lin W, Lai Z, Lin Y. PAs Regulate Early Somatic Embryo Development by Changing the Gene Expression Level and the Hormonal Balance in Dimocarpus longan Lour. Genes (Basel) 2022; 13:genes13020317. [PMID: 35205362 PMCID: PMC8872317 DOI: 10.3390/genes13020317] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 02/03/2022] [Accepted: 02/04/2022] [Indexed: 02/01/2023] Open
Abstract
Polyamines (PAs) play an important regulatory role in many basic cellular processes and physiological and biochemical processes. However, there are few studies on the identification of PA biosynthesis and metabolism family members and the role of PAs in the transition of plant embryogenic calli (EC) into globular embryos (GE), especially in perennial woody plants. We identified 20 genes involved in PA biosynthesis and metabolism from the third-generation genome of longan (Dimocarpus longan Lour.). There were no significant differences between longan and other species regarding the number of members, and they had high similarity with Citrus sinensis. Light, plant hormones and a variety of stress cis-acting elements were found in these family members. The biosynthesis and metabolism of PAs in longan were mainly completed by DlADC2, DlSAMDC2, DlSAMDC3, DlSPDS1A, DlSPMS, DlCuAOB, DlCuAO3A, DlPAO2 and DlPAO4B. In addition, 0.01 mmol∙L−1 1-aminocyclopropane-1-carboxylic acid (ACC), putrescine (Put) and spermine (Spm), could promote the transformation of EC into GE, and Spm treatment had the best effect, while 0.01 mmol∙L−1 D-arginine (D-arg) treatment inhibited the process. The period between the 9th and 11th days was key for the transformation of EC into GE in longan. There were higher levels of gibberellin (GA), salicylic acid (SA) and abscisic acid (ABA) and lower levels of indole-3-acetic acid (IAA), ethylene and hydrogen peroxide (H2O2) in this key period. The expression levels in this period of DlADC2, DlODC, DlSPDS1A, DlCuAOB and DlPAO4B were upregulated, while those of DlSAMDC2 and DlSPMS were downregulated. These results showed that the exogenous ACC, D-arg and PAs could regulate the transformation of EC into GE in longan by changing the content of endogenous hormones and the expression levels of PA biosynthesis and metabolism genes. This study provided a foundation for further determining the physicochemical properties and molecular evolution characteristics of the PA biosynthesis and metabolism gene families, and explored the mechanism of PAs and ethylene for regulating the transformation of plant EC into GE.
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Affiliation(s)
- Chunwang Lai
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Xiaojuan Zhou
- Ganzhou Agricultural and Rural Bureau, Ganzhou 341000, China;
| | - Shuting Zhang
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Xueying Zhang
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Mengyu Liu
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Chunyu Zhang
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Xiaoqiong Xu
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Xiaoping Xu
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Xiaohui Chen
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Yan Chen
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Wenzhong Lin
- Quanzhou Agricultural Science Research Institute, Quanzhou 362212, China;
| | - Zhongxiong Lai
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
| | - Yuling Lin
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (C.L.); (S.Z.); (X.Z.); (M.L.); (C.Z.); (X.X.); (X.X.); (X.C.); (Y.C.); (Z.L.)
- Correspondence:
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Jia T, Hou J, Iqbal MZ, Zhang Y, Cheng B, Feng H, Li Z, Liu L, Zhou J, Feng G, Nie G, Ma X, Liu W, Peng Y. Overexpression of the white clover TrSAMDC1 gene enhanced salt and drought resistance in Arabidopsis thaliana. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 165:147-160. [PMID: 34038811 DOI: 10.1016/j.plaphy.2021.05.018] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 05/14/2021] [Indexed: 05/20/2023]
Abstract
S-adenosylmethionine decarboxylase (SAMDC) mediates the biosynthesis of polyamines (PAs) and plays a positive role in plants' response to adversity stress tolerance. In this study, we isolated a SAMDC gene from white clover, which is located in mitochondria. It was strongly induced when white clover exposed to drought (15% PEG6000), salinity (200 mM NaCl), 20 μM spermidine, 100 μM abscisic acid, and 10 mM H2O2, especially in leaves. The INVSc1 yeast introduced with TrSAMDC1 had tolerance to drought, salt, and oxidative stress. Overexpression of TrSAMDC1 in Arabidopsis showed higher fresh weight and dry weight under drought and salt treatment and without growth inhibition under normal conditions. Leaf senescence induced by drought and saline was further delayed in transgenic plants, regardless of cultivation in 1/2 MS medium and soil. During drought and salt stress, transgenic plants exhibited a significant increase in relative water content, maximum photosynthesis efficiency (Fv/Fm), performance index on the absorption basis (PIABS), activities of antioxidant protective enzymes such as SOD, POD, CAT, and APX, and a significant decrease in accumulation of MDA and H2O2 as compared to the WT. The concentrations of total PAs, putrescine, spermidine, and spermidine in transgenic lines were higher in transgenic plants than in WT under normal and drought conditions. These results suggested that TrSAMDC1 could effectively mitigate abiotic stresses without the expense of production and be a potential candidate gene for improving the drought and salt resistance of crops.
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Affiliation(s)
- Tong Jia
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jieru Hou
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Muhammad Zafar Iqbal
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Youzhi Zhang
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Bizhen Cheng
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Huahao Feng
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Zhou Li
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Lin Liu
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jiqiong Zhou
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Guangyan Feng
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Gang Nie
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Xiao Ma
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Wei Liu
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yan Peng
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
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Amini S, Maali-Amiri R, Kazemi-Shahandashti SS, López-Gómez M, Sadeghzadeh B, Sobhani-Najafabadi A, Kariman K. Effect of cold stress on polyamine metabolism and antioxidant responses in chickpea. JOURNAL OF PLANT PHYSIOLOGY 2021; 258-259:153387. [PMID: 33636556 DOI: 10.1016/j.jplph.2021.153387] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 01/15/2021] [Accepted: 02/03/2021] [Indexed: 05/04/2023]
Abstract
Metabolic and genomic characteristics of polyamines (PAs) may be associated with the induction of cold tolerance (CT) responses in plants. Characteristics of PAs encoding genes in chickpea (Cicer arietinum L.) and their function under cold stress (CS) are currently unknown. In this study, the potential role of PAs along with the antioxidative defense systems were assessed in two chickpea genotypes (Sel96th11439, cold-tolerant and ILC533, cold-sensitive) under CS conditions. Six days after exposure to CS, the leaf H2O2 content and electrolyte leakage index increased in the sensitive genotype by 47.7 and 59 %, respectively, while these values decreased or remained unchanged, respectively, in the tolerant genotype. In tolerant genotype, the enhanced activity of superoxide dismutase (SOD) (by 50 %) was accompanied by unchanged activities of ascorbate peroxidase (APX), guaiacol peroxidase (GPX) and catalase (CAT) as well as the accumulation of glutathione (GSH) (by 43 %) on the sixth day of CS. Higher levels of putrescine (Put) (322 %), spermidine (Spd) (45 %), spermine (Spm) (69 %) and the highest ratio of Put/(Spd + Spm) were observed in tolerant genotype compared to the sensitive one on the sixth day of CS. Gamma-aminobutyric acid (GABA) accumulation was 74 % higher in tolerant genotype compared to the sensitive one on the sixth day of CS. During CS, the activity of diamine oxidase (DAO) and polyamine oxidase (PAO) increased in tolerant (by 3.02- and 2.46-fold) and sensitive (by 2.51- and 2.8-fold) genotypes, respectively, in comparison with the respective non-stressed plants (normal conditions). The highest activity of DAO and PAO in the tolerant genotype was accompanied by PAs decomposition and a peak in GABA content on the sixth day of CS. The analysis of chickpea genome revealed the presence of five PAs biosynthetic genes, their chromosomal locations, and cis-regulatory elements. A significant increase in transcript levels of arginine decarboxylase (ADC) (24.26- and 7.96-fold), spermidine synthase 1 (SPDS1) (3.03- and 1.53-fold), SPDS2 (5.5- and 1.62-fold) and spermine synthase (SPMS) (3.92- and 1.65-fold) genes was detected in tolerant and sensitive genotypes, respectively, whereas the expression of ornithine decarboxylase (ODC) genes decreased significantly under CS conditions in both genotypes. Leaf chlorophyll and carotenoid contents exhibited declining trends in the sensitive genotype, while these photosynthetic pigments were stable in the tolerant genotype due to the superior performance of defensive processes under CS conditions. Overall, these results suggested the specific roles of putative PAs genes and PAs metabolism in development of effective CT responses in chickpea.
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Affiliation(s)
- Saeed Amini
- Department of Agronomy and Plant Breeding, University College of Agriculture and Natural Resources, University of Tehran, 31587-77871, Karaj, Iran
| | - Reza Maali-Amiri
- Department of Agronomy and Plant Breeding, University College of Agriculture and Natural Resources, University of Tehran, 31587-77871, Karaj, Iran.
| | - Seyyedeh-Sanam Kazemi-Shahandashti
- Department of Agronomy and Plant Breeding, University College of Agriculture and Natural Resources, University of Tehran, 31587-77871, Karaj, Iran
| | - Miguel López-Gómez
- Departamento de Fisiología Vegetal, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071, Granada, Spain
| | - Behzad Sadeghzadeh
- Dryland Agricultural Research Institute, Ministry of Jihad-e-Agriculture Research and Education Organization, Maraghe, Iran
| | - Ahmad Sobhani-Najafabadi
- Agricultural Biotechnology Research Institute of Iran, Isfahan Branch, Agricultural Research, Education and Extension Organization (AREEO), Iran
| | - Khalil Kariman
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
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Bai J, Jin K, Qin W, Wang Y, Yin Q. Proteomic Responses to Alkali Stress in Oats and the Alleviatory Effects of Exogenous Spermine Application. FRONTIERS IN PLANT SCIENCE 2021; 12:627129. [PMID: 33868329 PMCID: PMC8049610 DOI: 10.3389/fpls.2021.627129] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 03/08/2021] [Indexed: 05/07/2023]
Abstract
Alkali stress limits plant growth and yield more strongly than salt stress and can lead to the appearance of yellow leaves; however, the reasons remain unclear. In this study, we found that (1) the down-regulation of coproporphyrinogen III oxidase, protoporphyrinogen oxidase, and Pheophorbide a oxygenase in oats under alkali stress contributes to the appearance of yellow leaves (as assessed by proteome and western blot analyses). (2) Some oat proteins that are involved in the antioxidant system, root growth, and jasmonic acid (JA) and indole-3-acetic acid (IAA) synthesis are up-regulated in response to alkalinity and help increase alkali tolerance. (3) We added exogenous spermine to oat plants to improve their alkali tolerance, which resulted in higher chlorophyll contents and plant dry weights than in plants subjected to alkaline stress alone. This was due to up-regulation of chitinase and proteins related to chloroplast structure, root growth, and the antioxidant system. Spermine addition increased sucrose utilization efficiency, and promoted carbohydrate export from leaves to roots to increase energy storage in roots. Spermine addition also increased the IAA and JA contents required for root growth.
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Affiliation(s)
- Jianhui Bai
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Ke Jin
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
- *Correspondence: Ke Jin,
| | - Wei Qin
- Inner Mongolia Technical College of Construction, Hohhot, China
- Wei Qin,
| | - Yuqing Wang
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Qiang Yin
- Institute of Grassland Research of Chinese Academy of Agricultural Sciences, Hohhot, China
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