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Ahmed M, Malhotra SS, Yadav O, Monika, Saini C, Sharma N, Gupta MK, Mohapatra RK, Ansari A. DFT and TDDFT exploration on electronic transitions and bonding aspect of DPA and PTDC ligated transition metal complexes. J Mol Model 2024; 30:122. [PMID: 38570356 DOI: 10.1007/s00894-024-05912-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Accepted: 03/22/2024] [Indexed: 04/05/2024]
Abstract
CONTEXT In this study, we have investigated the structure, reactivity, bonding, and electronic transitions of DPA and PDTC along with their Ni-Zn complexes using DFT/TD-DFT methods. The energy gap between the frontier orbitals was computed to understand the reactivity pattern of the ligands and metal complexes. From the energies of FMO's, the global reactivity descriptors such as electron affinity, ionization potential, hardness (η), softness (S), chemical potential (μ), electronegativity (χ), and electrophilicity index (ω) have been calculated. The complexes show a strong NLO properties due to easily polarization as indicated by the narrow HOMO-LUMO gap. The polarizability and hyperpolarizabilities of the complexes indicate that they are good candidates for NLO materials. Molecular electrostatic potential (MEP) maps identified electrophilic and nucleophilic sites on the surfaces of the complexes. TDDFT and NBO analyses provided insights into electronic transitions, bonding, and stabilizing interactions within the studied complexes. DPA and PDTC exhibited larger HOMO-LUMO gaps and more negative electrostatic potentials compared to their metal complexes suggesting the higher reactivity. Ligands (DPA and PDTC) had absorption spectra in the range of 250 nm to 285 nm while their complexes spanned 250 nm to 870 nm. These bands offer valuable information on electronic transitions, charge transfer and optical behavior. This work enhances our understanding of the electronic structure and optical properties of these complexes. METHODS Gaussian16 program was used for the optimization of all the compounds. B3LYP functional in combination with basis sets, such as LanL2DZ for Zn, Ni and Cu while 6-311G** for other atoms like C, H, O, N, and S was used. Natural bond orbital (NBO) analysis is carried out to find out how the filled orbital of one sub-system interacts with the empty orbital of another sub-system. The ORCA software is used for computing spectral features along with the zeroth order regular approximation method (ZORA) to observe its relativistic effects. TD-DFT study is carried out to calculate the excitation energy by using B3LYP functional.
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Affiliation(s)
- Mukhtar Ahmed
- Department of Chemistry, Central University of Haryana, Mahendergarh, 123031, India
| | - Sumit Sahil Malhotra
- Department of Chemistry, Central University of Haryana, Mahendergarh, 123031, India
| | - Oval Yadav
- Department of Chemistry, Central University of Haryana, Mahendergarh, 123031, India
| | - Monika
- Department of Chemistry, Central University of Haryana, Mahendergarh, 123031, India
| | - Charu Saini
- Department of Chemistry, Central University of Haryana, Mahendergarh, 123031, India
| | - Neha Sharma
- Life Science, Dyal Singh College, University of Delhi, Delhi, 110003, India
| | - Manoj Kumar Gupta
- Department of Chemistry, Central University of Haryana, Mahendergarh, 123031, India
| | - Ranjan Kumar Mohapatra
- Department of Chemistry, Government College of Engineering, Keonjhar, Odisha, 758002, India
| | - Azaj Ansari
- Department of Chemistry, Central University of Haryana, Mahendergarh, 123031, India.
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Bhattacharyya MK, Gogoi A, Chetry S, Dutta D, Verma AK, Sarma B, Franconetti A, Frontera A. Antiproliferative evaluation and supramolecular association in Mn(II) and Zn(II) bipyridine complexes: Combined experimental and theoretical studies. J Inorg Biochem 2019; 200:110803. [DOI: 10.1016/j.jinorgbio.2019.110803] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Revised: 08/07/2019] [Accepted: 08/18/2019] [Indexed: 12/11/2022]
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Abstract
The pyridine-2,6-carboxylic esters pydicR2 with R = Me or Ph form the unprecedented mononuclear CuII complexes [Cu(pydicR2)Cl3]− in one-pot reactions starting from pyridine-2,6-carboxychloride pydicCl2, CuII chloride, and NEt3 in MeOH or PhOH solution under non-aqueous conditions. The triethylammonium salts (HNEt3)[Cu(pydicR2)Cl3] were isolated. The methyl derivative could be crystallized to allow a XRD structure determination. Both structures were optimized using DFT calculations in various surroundings ranging from gas phase and the non-coordinating solvent CH2Cl2 to the weakly coordinating acetone and well-coordinating solvents acetonitrile (MeCN) or dimethylformamide (DMF), while detailed calculation showed the charge distribution, dipole moments, and HOMO–LUMO gap energies changing upon solvation. According to these calculations, the ion pairs and the anionic CuII complexes were stable, which shows only Cu–Cl bond elongation and weakening of the charge transfer between the anionic complex and the cation as solvents become polar. Synthesis attempts in the presence of water yielded the CuII complexes [Cu(pydic)(OH2)2]n and [Cu(OH2)6][{Cu(pydic)}2(µ-Cl)2], which results from pydicCl2 hydrolysis. Alternatively, the new pydic(IPh)2 (IPh = 2-iodo-phenyl) ester ligand was synthesized and reacted with anhydrous CuCl2, which yields the new binuclear complex [{Cu(pydic(IPh)2)Cl}2(µ-Cl)2]. EPR spectroscopy of the solid compounds reveals typical axial spectra in line with the observed and DFT calculated geometries. Cyclic voltammetry and UV–vis absorption spectroscopy in solution are in line with un-dissociated complex species [Cu(pydicR2)Cl3]−.
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Synthesis, structures and magnetic properties of four 3D heterometallic cobalt(II)–barium(II) coordination polymers. TRANSIT METAL CHEM 2018. [DOI: 10.1007/s11243-018-0231-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Krest A, Nitsche S, Arefyeva N, Grzesiak I, Werker M, Ruschewitz U, Klein A. Tetraorganopnictonium and Alkali Metal Salts of Pyridine‐2,6‐di‐tetrazolate. Z Anorg Allg Chem 2017. [DOI: 10.1002/zaac.201700275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Alexander Krest
- Department für Chemie Institut für Anorganische Chemie Universität zu Köln Greinstraße 6 50939 Köln Germany
| | - Sara Nitsche
- Department für Chemie Institut für Anorganische Chemie Universität zu Köln Greinstraße 6 50939 Köln Germany
| | - Natalia Arefyeva
- Department für Chemie Institut für Anorganische Chemie Universität zu Köln Greinstraße 6 50939 Köln Germany
| | - Ireneus Grzesiak
- Department für Chemie Institut für Anorganische Chemie Universität zu Köln Greinstraße 6 50939 Köln Germany
| | - Melanie Werker
- Department für Chemie Institut für Anorganische Chemie Universität zu Köln Greinstraße 6 50939 Köln Germany
| | - Uwe Ruschewitz
- Department für Chemie Institut für Anorganische Chemie Universität zu Köln Greinstraße 6 50939 Köln Germany
| | - Axel Klein
- Department für Chemie Institut für Anorganische Chemie Universität zu Köln Greinstraße 6 50939 Köln Germany
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Demir S, Çepni HM, Hołyńska M, Kavanoz M, Yilmaz F, Zorlu Y. Copper(II) complexes with pyridine-2,6-dicarboxylic acid from the oxidation of copper(I) iodide. J COORD CHEM 2017. [DOI: 10.1080/00958972.2017.1393071] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Selçuk Demir
- Faculty of Arts and Sciences, Department of Chemistry, Recep Tayyip Erdoğan University, Rize, Turkey
| | - Hamide Merve Çepni
- Faculty of Arts and Sciences, Department of Chemistry, Recep Tayyip Erdoğan University, Rize, Turkey
| | | | - Muammer Kavanoz
- Faculty of Arts and Sciences, Department of Chemistry, Recep Tayyip Erdoğan University, Rize, Turkey
| | - Fatih Yilmaz
- Faculty of Arts and Sciences, Department of Chemistry, Recep Tayyip Erdoğan University, Rize, Turkey
| | - Yunus Zorlu
- Department of Chemistry, Gebze Technical University, Gebze, Turkey
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Krest A, Sandleben A, Valldor M, Werker M, Ruschewitz U, Klein A. Heteroleptic Complexes of the Tridentate Pyridine-2,6-di-tetrazolate Ligand. ChemistrySelect 2017. [DOI: 10.1002/slct.201701124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Alexander Krest
- Department für Chemie; Institut für Anorganische Chemie; Universität zu Köln; Greinstraße 6 D-50939 Köln Germany, Web
| | - Aaron Sandleben
- Department für Chemie; Institut für Anorganische Chemie; Universität zu Köln; Greinstraße 6 D-50939 Köln Germany, Web
| | - Martin Valldor
- Max Planck Institute for Chemical Physics of Solids; Nöthnitzer Straβe 40 01187 Dresden Germany
- Leibniz Institute for Solid State and Materials Research; Helmholtzstr. 20 01069 Dresden Germany
| | - Melanie Werker
- Department für Chemie; Institut für Anorganische Chemie; Universität zu Köln; Greinstraße 6 D-50939 Köln Germany, Web
| | - Uwe Ruschewitz
- Department für Chemie; Institut für Anorganische Chemie; Universität zu Köln; Greinstraße 6 D-50939 Köln Germany, Web
| | - Axel Klein
- Department für Chemie; Institut für Anorganische Chemie; Universität zu Köln; Greinstraße 6 D-50939 Köln Germany, Web
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İlkimen H, Yenikaya C, Gülbandılar A, Sarı M. Synthesis and characterization of a novel proton salt of 2-amino-6-nitrobenzothiazole with 2,6-pyridinedicarboxylic acid and its metal complexes and their antimicrobial and antifungal activity studies. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.04.068] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Shankar K, Kirillov AM, Baruah JB. Bottom up synthesis for homo- and heterometallic 2,3-pyridinedicarboxylate coordination compounds. Polyhedron 2015. [DOI: 10.1016/j.poly.2015.10.031] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Shankar K, Das B, Baruah JB. Cation Exchange in Layered Copper(II) Coordination Polymers. Eur J Inorg Chem 2013. [DOI: 10.1002/ejic.201300906] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Das B, Crans DC, Baruah JB. Cation exchange, solvent free synthesis and packing patterns of quinolinium nickel(II) dipicolinates. Inorganica Chim Acta 2013. [DOI: 10.1016/j.ica.2013.05.023] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Klein A, Krest A, Nitsche S, Stirnat K, Valldor M. First Homoleptic Complexes of the Tridentate Pyridine‐2,6‐ditetrazolate Ligand. Eur J Inorg Chem 2013. [DOI: 10.1002/ejic.201201473] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Axel Klein
- Department für Chemie, Institut für Anorganische Chemie, Universität zu Köln, Greinstraße 6, 50939 Köln, Germany, http://www.klein.uni‐koeln.de/
| | - Alexander Krest
- Department für Chemie, Institut für Anorganische Chemie, Universität zu Köln, Greinstraße 6, 50939 Köln, Germany, http://www.klein.uni‐koeln.de/
| | - Sara Nitsche
- Department für Chemie, Institut für Anorganische Chemie, Universität zu Köln, Greinstraße 6, 50939 Köln, Germany, http://www.klein.uni‐koeln.de/
| | - Kathrin Stirnat
- Department für Chemie, Institut für Anorganische Chemie, Universität zu Köln, Greinstraße 6, 50939 Köln, Germany, http://www.klein.uni‐koeln.de/
| | - Martin Valldor
- II. Physikalisches Institut, Universität zu Köln, Zuelpicher Str. 77, 50937 Köln, Germany, http://http:/www.ph2.uni‐koeln.de
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Synthesis, crystal structure and NMR investigation of novel Ca(II) complexes with heterocyclic alcohol, aldehyde and carboxylate ligands. Evaluation of Ca(II) and Cd(II) analogues for anticancer activity. Inorganica Chim Acta 2013. [DOI: 10.1016/j.ica.2013.01.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kalita D, Herbst-Irme R, Stalke D, Baruah JB. Coordination polymers of sodium 2-(quinolin-8-yloxy)propionate: A receptor for selective metal ions. Polyhedron 2012. [DOI: 10.1016/j.poly.2012.06.034] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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Dipicolinato complexes of cobalt(II), copper(II) and zinc(II) with thiamine dications. Inorganica Chim Acta 2011. [DOI: 10.1016/j.ica.2011.01.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Das B, Ghosh K, Baruah JB. Coordination complex of dipicolinato cobalt(III) complex cation and anion. J COORD CHEM 2011. [DOI: 10.1080/00958972.2010.551658] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Babulal Das
- a Department of Chemistry , Indian Institute of Technology Guwahati , Guwahati 781 039, Assam, India
| | - Kaushik Ghosh
- a Department of Chemistry , Indian Institute of Technology Guwahati , Guwahati 781 039, Assam, India
| | - Jubaraj B. Baruah
- a Department of Chemistry , Indian Institute of Technology Guwahati , Guwahati 781 039, Assam, India
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Das B, Baruah JB. Dications of l-histidine and l-ornithine in layers of copper(II) and cobalt(II) dipicolinato anions. Polyhedron 2011. [DOI: 10.1016/j.poly.2010.09.021] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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