Synthesis, single crystal X-ray characterization, and solution studies of Zn(II)-, Cu(II)-, Ag(I)- and Ni(II)-pyridine-2,6-dipicolinate N-oxide complexes with different topologies and coordination modes

Preparation, Characterization, DFT Calculations, Antibacterial and Molecular Docking Study of Co(II), Cu(II), and Zn(II) Mixed Ligand Complexes

In the present work, complexes of cobalt(II), copper(II), and zinc(II), 2-amino-4-methylpyrimidineand, and 2,3-diaminopyridine were successfully prepared and characterized using elemental analysis, UV-visible, and FTIR spectroscopy, as well as magnetic susceptibility measurements, molar conductance, TGA analysis, and X-ray diffraction. From elemental and spectral data, the formulae [M(L1)(L2)Cl2(H2O)] (where L1 = AMPY (2-amino-4-methylpyrimidine) and L2 = DAPY(2,3-diaminopyridine)) and M = Co(II) (2), Cu(II) (2), and Zn(II)) for the metal complexes have been proposed. The geometric structures of the mixed-ligand complexes were found to be octahedral around the metal ions, and the XRD patterns showed monoclinic crystal systems with space group P21. The mode of bonding was pentacoordinate for Cu and hexacoordinate for Zn and Co. Different features may result from the fact that not all molecules have the same electron distribution. For example, Zn and Co have larger electron densities in at least one of the chlorides in the HOMO compared with pentacoordinate Cu, which has a small electron distribution on the chloride. Thermal analysis indicated that all metal complexes are stable up to about 88 °C with thermodynamically favored overlapped chemical reactions. Excellent antibacterial and antifungal activity was shown by the three synthesized forms of the complexes. The Zn(II) complex had a high level of antioxidant activity with a DPPH scavenging of 91.5%, whereas the Cu(II) complex had a low level of antioxidant potential (16.5%). The docking tests also showed that all compounds had good binding energy levels (7.2–7.9 kcal mol−1). For this reason, all molecules can easily fit in the receptor protein’s catalytic sites. However, the Co(II) complex is shown to be more active.

Coordination complexes of zinc and manganese based on pyridine-2,5-dicarboxylic acid N-oxide: DFT studies and antiproliferative activities consideration

We report here the design, synthesis, and antiproliferative activity of three coordination complexes [Mn2(pydco)2(bpy)2(H2O)2]·2H2O (1), [Zn(bpy)(Hpydco)2] (2), and [Zn(bpy)Cl(Hpydco)]·2H2O (3) (H2pydco = pyridine-2,5-dicarboxylic acid N-oxide, bpy = 2,2'-bipyridine). Molecular structures of these complexes have been characterized by elemental analysis, Fourier transform infrared spectroscopy, thermogravimetric analysis, and powder and single-crystal X-ray diffraction. According to the structural analysis, 1-3 are discrete complexes containing N- and O-donor ligands (bpy and pydco2-) in which pydco2- can be coordinated to the metal centres via the N-oxide oxygen and one carboxylate oxygen to generate a six-membered chelate ring. Also, these structures benefit from extensive intermolecular interactions such as hydrogen bonds and π-interactions which are the major forces to make them more stable in the solid state. The energetic features of the π-stacking interactions observed in compounds 1-3 have been computed and compared to the H-bonds. The interactions in the solid state have been also studied using the independent gradient model approach (IGM plot). The IGM-δg approach uses a new descriptor (δg) that locally represents the difference between a virtual upper limit of the electron density gradient and the true electron density gradient. This newly developed IGM methodology automatically extracts the signature of interactions between two given fragments. Finally, the antiproliferative properties of these complexes were tested on several cancer cell lines by MTT assay and flow cytometry. Also, to compare the antiproliferative activities of these complexes with common chemotherapy drugs, the antiproliferative property of cisplatin was evaluated as a reference and positive control.

A redetermination of the structure and Hirshfeld surface analysis of poly[di-aquadi-μ-hydroxido-tetra-kis-(μ-nicotinato N-oxide)tricopper(II)]

The product obtained from the reaction of pyridine-2,3-di-carb-oxy-lic acid and hydrated copper(II) chloride in hot aqueous NaOH solution was determined by low temperature X-ray diffraction to be [Cu3(C6H4NO3)4(OH)2(H2O)2] n or [Cu3(μ-OH)2(μ-nicNO)4(H2O)2] n (nicNO is pyridine-3-carboxyl-ate N-oxide), a structure obtained from room temperature data and reported previously. The present determination is improved in quality and treatment of the H atoms. A Hirshfeld surface analysis of the inter-molecular inter-actions is presented.

Influence of 2-Amino-4-methylpyridine and 2-Aminopyrimidine Ligands on the Malonic Acid-Cu(II) System: Insights through Supramolecular Interactions and Photoresponse Properties

Two Cu(II)-malonate complexes with 2-amino-4-methylpyridine (complex 1) and 2-aminopyrimidine (complex 2) auxiliary ligands were synthesized, and their single-crystal X-ray diffraction structures were established. Change in the auxiliary ligand exhibits substantial structural variation in the present complexes. Complex 1 shows a one-dimensional anionic copper-malonate moiety connected by the malonate bridge, whereas complex 2 is a mononuclear one. For both the complexes, auxiliary ligands are attached with the Cu-malonate moiety through various noncovalent interactions. Optical band gap, electrical conductivity, and photosensitivity of complexes 1 and 2 were measured, but the values of electrical parameters of the complexes significantly differ from each other. However, the magnitudes of electrical parameters increase several times for both the complexes when they are exposed under visible light, though the values of light sensing parameters of complex 1 were found to be higher than those of complex 2. Density functional theory calculations for complex 1 were carried out to support the experimental result.

Effects of N-oxidation on the molecular and crystal structures and properties of isocinchomeronic acid, its metal complexes and their supramolecular architectures: experimental, CSD survey, solution and theoretical approaches

Nine coordination complexes and polymer (M/L/X) based on Co, Ni, Zn, Cu (M), pyridine-N-oxide-2,5-dicarboxylic acid (H2pydco) (L) and either isonicotinamide (Ina), piperazine (pipz), 2,2'-bipyridine (bipy) and 1,10-phenanthroline (phen) (X) were synthesized and characterized by elemental analyses, infrared spectroscopy and single crystal X-ray diffraction. The resulting empirical formulae of the prepared complexes are [Co(H2O)6][Co(pydco)2(H2O)2]·2H2O (1), [M(pydco)(H2O)4]2 [M = Co (2), Ni (3), Zn (4)], [Co(pydco)(bipy)(H2O)2]·4H2O (5), [Co(pydco)(phen)(H2O)2]·5.135(H2O)·0.18(EtOH) (6), [Cu(Hpydco)(bipy)Cl]·2H2O (7), [Cu(Hpydco)(bipy)Cl]2·2H2O (8), and {[AgCu(H2O)2(phen)(pydco)]NO3} n (9). With the exception of 9, which forms an extended structure via multiple coordination modes, all the complexes contain (H)pydco as a bidentate ligand coordinated to the metal ion via the N-oxide and the adjacent carboxylate group oxygen atom, creating a chelate ring. The metal centers exhibit either distorted octahedral (1-6) or square pyramidal (7-9) geometry. Our results demonstrate that, when acting cooperatively, non-covalent interactions such as X-H⋯O hydrogen bonds (X = O, N, C), C-O⋯π and π⋯π stacking represent driving forces for the selection of different three-dimensional structures. Moreover, in compounds 2-4, 1D supramolecular chains are formed where O⋯π-hole interactions are established, which unexpectedly involve the non-coordinated carboxylate group. The non-covalent interaction (NCI) plot index analysis reveals the existence of the O⋯π-hole interactions that have been evaluated using DFT calculations. The Cremer and Pople ring puckering parameters are also investigated. The complexation reactions of these molecules with M were investigated by solution studies. The stoichiometry of the most abundant species in the solution was very close to the corresponding crystals. Finally, the effect of N-oxidation on the geometry of complexes has been also studied using the Cambridge Structural Database. It shows that complexes containing N-oxidized H2pydc are very rare.

Developing a magnetic metal organic framework of copper bearing a mixed azido/butane-1,4-dicarboxylate bridge: magnetic and gas adsorption properties

A magnetic metal organic framework {[Cu(but-1,4-dc)0.5(N3)(H2O)]·H2O}n (MFUM-1(Cu)) (but-1,4-dc = butane-1,4-dicarboxylate) was synthesized and characterized structurally and magnetically. In MFUM-1(Cu), each CuII ion has a distorted octahedral geometry with an obvious Jahn-Teller distortion, where the coordination environment is composed of mixed EO-azido/aliphatic based carboxylate/H2O threefold bridges. These bridges extend the structure of MFUM-1(Cu) in two dimensions by covalent connectivity and form square-shaped channels. Also, a study was done to determine the effectiveness of sonochemical synthesis for the preparation of nano-sheets of MFUM-1(Cu) and subsequently the influence of particle size on physical properties such as magnetic behavior and thermal stability. The particles were characterized by elemental analyses, infrared spectroscopy (IR), scanning electron microscopy (SEM), thermogravimetric analysis (TGA), and powder X-ray diffraction (PXRD) analyses. The effects of parameters such as concentration, solvent, and reaction time on the size distribution, morphology, and yield of product were carefully studied. The magnetic properties of MFUM-1(Cu) and corresponding nano-structure were examined which indicated metamagnetism with strong intrachain ferromagnetic coupling versus the weak interchain antiferromagnetic coupling. Finally, the application of MFUM-1(Cu) in the separation of carbon dioxide from nitrogen and also from methane was theoretically investigated. High calculated selectivity of CO2 over N2 and CH4 reveals the potential application of MFUM-1(Cu) in practical systems of gas separation.