1
|
Abu-Izneid T, Rauf A, Ahmad Z, Wadood A, Ayub K, Muhammad N, Al-Awthan YS, Maqbool M, Bahattab OS, Hemeg HA, Naz S, Formanowicz D. Density functional theory (DFT), molecular docking, and xanthine oxidase inhibitory studies of dinaphthodiospyrol S from Diospyros kaki L. Saudi Pharm J 2024; 32:101936. [PMID: 38261938 PMCID: PMC10797153 DOI: 10.1016/j.jsps.2023.101936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Accepted: 12/25/2023] [Indexed: 01/25/2024] Open
Abstract
In this work, we investigated Diospyros kaki extract and an isolated compound for their potential as xanthine oxidase (XO) inhibitors, a target enzyme involved in inflammatory disorders. The prepared extract was subjected to column chromatography, and dinaphthodiospyrol S was isolated. Then XO inhibitory properties were assessed using a spectrophotometry microplate reader. DMSO was taken as a negative control, and allopurinol was used as a standard drug. The molecular docking study of the isolated compound to the XO active site was performed, followed by visualization and protein-ligand interaction. The defatted chloroform extract showed the highest inhibitory effect, followed by the chloroform extract and the isolated compound. The isolated compound exhibited significant inhibitory activity against XO with an IC50 value of 1.09 µM. Molecular docking studies showed that the compound strongly interacts with XO, forming hydrogen bond interactions with Arg149 and Cys113 and H-pi interactions with Cys116 and Leu147. The binding score of -7.678 kcal/mol further supported the potential of the isolated compound as an XO inhibitor. The quantum chemical procedures were used to study the electronic behavior of dinaphthodiospyrol S isolated from D. kaki. Frontier molecular orbital (FMO) analysis was performed to understand the distribution of electronic density, highest occupied molecular orbital HOMO, lowest unoccupied molecular orbital LUMO, and energy gaps. The values of HOMO, LUMO, and energy gap were found to be -6.39, -3.51 and 2.88 eV respectively. The FMO results indicated the intramolecular charge transfer. Moreover, reactivity descriptors were also determined to confirm the stability of the compound. The molecular electrostatic potential (MEP) investigation was done to analyze the electrophilic and nucleophilic sites within a molecule. The oxygen atoms in the compound exhibited negative potential, indicating that they are favorable sites for electrophilic attacks. The results indicate its potential as a therapeutic agent for related disorders. Further studies are needed to investigate this compound's in vivo efficacy and safety as a potential drug candidate.
Collapse
Affiliation(s)
- Tareq Abu-Izneid
- Pharmaceutical Sciences Department, College of Pharmacy, Al Ain University, Al Ain 64141, United Arab Emirates
| | - Abdur Rauf
- Department of Chemistry, University of Swabi, Ambar 23561, Khyber Pakhtunkhwa, Pakistan
| | - Zubair Ahmad
- Department of Chemistry, University of Swabi, Ambar 23561, Khyber Pakhtunkhwa, Pakistan
| | - Abdul Wadood
- Department of Biochemistry, Abdul Wali Khan, University Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Khurshid Ayub
- Department of Chemistry, COMSATS University Islamabad, Islamabad, Pakistan
| | - Naveed Muhammad
- Department of Pharmacy, Abdul Wali Khan, University Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Yahya S. Al-Awthan
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71421, Saudi Arabia
- Department of Biology, Faculty of Science, Ibb University, Ibb 70270, Yemen
| | - Maria Maqbool
- Department of Chemistry, COMSATS University Islamabad, Islamabad, Pakistan
| | - Omar S. Bahattab
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71421, Saudi Arabia
| | - Hassan A. Hemeg
- Department of Medical Laboratory Technology, College of Applied Medical Sciences, Taibah University, P.O. Box 344, Al-Madinah Al-Monawra 41411, Saudi Arabia
| | - Saima Naz
- Institute of Biotechnology & Microbiology, Bacha Khan University Charsadda, Khyber Pakhtunkhwa (K.P.), Pakistan
| | - Dorota Formanowicz
- Chair and Department of Medical Chemistry and Laboratory Medicine, Poznan University of Medical Sciences, Rokietnicka 8, 60-806 Poznan, Poland
| |
Collapse
|
2
|
Arumugam A, Shanmugam R, Munusamy S, Muhammad S, Algarni H, Sekar M. Study of the Crystal Architecture, Optoelectronic Characteristics, and Nonlinear Optical Properties of 4-Amino Antipyrine Schiff Bases. ACS OMEGA 2023; 8:15168-15180. [PMID: 37151560 PMCID: PMC10157849 DOI: 10.1021/acsomega.2c08305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 04/03/2023] [Indexed: 05/09/2023]
Abstract
Two Schiff bases, (E)-4-((2-chlorobenzylidene)amino)-1,5-dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one (4AAPOCB) and (E)-4-((4-chlorobenzylidene)amino)-1,5-dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one (4AAPPCB), have been synthesized and grown as single crystals. Single-crystal X-ray diffraction analysis was employed to determine the crystal structure of the compounds, and the results suggest that the compounds crystallized into an orthorhombic crystal system having P212121 and Pbca space groups, respectively. Further, the crystallinity of the compounds was analyzed by the PXRD technique. The UV-vis-NIR spectra of the compounds demonstrate excellent transmittance in the entire visible region. The lower cutoff wavelengths of the compounds were determined to be 338 and 333 nm, respectively; additionally, optical band gaps of the compounds found were 4.60 and 4.35 eV. FTIR and NMR (1H and 13C) spectral techniques were utilized to analyze the molecular structure of the compounds. The compounds emit photoluminescence with broad emission bands with centers at 401 and 418 nm. The thermal stability and phase transitions were assessed through thermogravimetric methods. The phase transition prior to melting was indicated by the endothermic event at around 190 °C in the DTA curves of both crystals, and the same was observed in the DSC curves. The second harmonic efficiencies of the powdered compounds I and II were found to be 3.52 and 1.13 times better than that of the standard reference KDP. The 4AAPOCB and 4AAPPCB compounds showed isotropic polarizability amplitudes of 46.02 × 10-24 and 46.52 × 10-24 esu, respectively. The calculation of linear polarizability and NLO second-order polarizability (β) along with other optical parameters was performed for optimized geometries. The nonzero amplitudes of the average β values for compounds 4AAPOCB and 4AAPPCB were found to be 14.74 × 10-30 and 8.10 × 10-30 esu, respectively, which show a decent potential of the synthesized molecules for NLO applications. The calculated β amplitudes were further explained based on calculated electronic parameters like molecular electrostatic potentials, frontier molecular orbitals, molecular orbital energies, transition energies, oscillator strengths, and unit spherical representation of NLO polarizability. The current analysis emphasizes the significance of synthesized compounds as prospective candidates for optical and NLO applications through the use of experiments and quantum computations.
Collapse
Affiliation(s)
- Amsaveni Arumugam
- Department
of Chemistry, Sri Ramakrishna Mission Vidyalaya
College of Arts and Science, Coimbatore 641 020, Tamil Nadu, India
| | - Ramesh Shanmugam
- Department
of Chemistry, Sri Ramakrishna Mission Vidyalaya
College of Arts and Science, Coimbatore 641 020, Tamil Nadu, India
- Department
of Chemistry, Adithya Institute of Technology, Coimbatore 641 107, Tamil Nadu, India
| | - Saravanabhavan Munusamy
- Department
of Chemistry, KPR Institute of Engineering
and Technology, Coimbatore 641407, Tamil Nadu, India
| | - Shabbir Muhammad
- Department
of Chemistry, College of Science, King Khalid
University, P.O. Box 9004, Abha 61413,Saudi Arabia
| | - Hamed Algarni
- Department
of Physics, College of Science, King Khalid
University, P.O. Box 9004, Abha 61413,Saudi Arabia
| | - Marimuthu Sekar
- Department
of Chemistry, Sri Ramakrishna Mission Vidyalaya
College of Arts and Science, Coimbatore 641 020, Tamil Nadu, India
| |
Collapse
|
3
|
Muhammad S. Symmetric vs. asymmetric: Which one is the better molecular configuration for achieving robust NLO response? J Mol Graph Model 2022; 114:108209. [DOI: 10.1016/j.jmgm.2022.108209] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 04/17/2022] [Accepted: 04/27/2022] [Indexed: 11/27/2022]
|
4
|
Asif A, Maqsood N, Mufarreh Elqahtani Z, Ayub K, Ans M, Iqbal J, Al-Buriahi M, Alomairy S, Alrowaili Z. DFT study of transition metals doped calix-4-pyrrole with excellent electronic and non-linear optical properties. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113767] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
|
5
|
Exploring the quinoidal oligothiophenes to their robust limit for efficient linear and nonlinear optical response properties. CHEMICAL PAPERS 2022. [DOI: 10.1007/s11696-022-02167-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
6
|
Bibi A, Muhammad S, UrRehman S, Bibi S, Bashir S, Ayub K, Adnan M, Khalid M. Chemically Modified Quinoidal Oligothiophenes for Enhanced Linear and Third-Order Nonlinear Optical Properties. ACS OMEGA 2021; 6:24602-24613. [PMID: 34604642 PMCID: PMC8482460 DOI: 10.1021/acsomega.1c03218] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Indexed: 05/10/2023]
Abstract
In the present investigation, quantum chemical calculations have been performed in a systematic way to explore the optoelectronic, charge transfer, and nonlinear optical (NLO) properties of different bis(dicyanomethylene) end-functionalized quinoidal oligothiophenes. The effect of different conformations (linking modes of thiophene rings) on conformational, optoelectronic, and NLO properties are studied from the best-performed dimer to octamer. The optical and NLO properties of all the selected systems (1-7) are calculated by means of density functional theory (DFT) methods. Among all the designed compounds, the largest linear isotropic (αiso) polarizability value of 603.1 × 10-24 esu is shown by compound 7 which is ∼12, ∼16, ∼9, ∼11, ∼10, and ∼4 times larger as compared to compounds 1-6, respectively. A relative investigation is performed considering the expansion in third-order NLO polarizability as a function of size and conformational modes. Among all the investigated systems, system 7 shows the highest value of static second hyperpolarizability ⟨γ⟩ with an amplitude of 7607 × 10-36 esu at the M06/6-311G** level of theory, which is ∼521, ∼505, ∼38, ∼884, ∼185, and ∼15 times more than that of compounds 1-6, respectively. The extensively larger ⟨γ⟩ amplitude of compound 7 with higher oscillator strength and lower transition energy indicates that NLO properties are remarkably dependent upon linking modes of thiophene rings and its chain length. Furthermore, to trace the origin of higher nonlinearities, TD-DFT calculations are also performed at the same TD-M06/6-311G** level of theory. Additionally, a comprehensive understanding of the effect of structure/property relationship on the NLO polarizabilities of these investigated quinoidal oligothiophenes is obtained through the inspection of Frontier molecular orbitals, the density of states (TDOS and PDOS), and molecular electrostatic potential diagrams including the transition density matrix. Hence, the current examination will not just feature the NLO capability of entitled compounds yet additionally incite the interest of experimentalists to adequately modify the structure of these oligothiophenes for efficient optical and NLO applications.
Collapse
Affiliation(s)
- Amna Bibi
- Department
of Chemistry, University of Agriculture
Faisalabad, Faisalabad 38000, Pakistan
| | - Shabbir Muhammad
- Department
of Physics, College of Science, King Khalid
University, P.O. Box 9004, Abha 61413, Saudi Arabia
| | - Shafiq UrRehman
- Department
of Chemistry, University of Agriculture
Faisalabad, Faisalabad 38000, Pakistan
| | - Shamsa Bibi
- Department
of Chemistry, University of Agriculture
Faisalabad, Faisalabad 38000, Pakistan
| | - Shahid Bashir
- Centre
for Ionic University of Malaya, Department of Physics, University of Malaya, Kuala Lumpur 50603, Malaysia
| | - Khurshid Ayub
- Department
of Chemistry, COMSATS University, Abbottabad Campus, Islamabad 22060, Pakistan
| | - Muhammad Adnan
- Graduate
School, Department of Chemistry, Chosun
University, Gwangju 501-759, Republic of Korea
| | - Muhammad Khalid
- Department
of Chemistry, Khwaja Fareed University of
Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
| |
Collapse
|
7
|
Muhammad S, Lai CH, Al-Sehemi AG, Alshahrani T, Iqbal J, Ayub K. Exploring the twisted molecular configurations for tuning their optical and nonlinear optical response properties: A quantum chemical approach. J Mol Graph Model 2021; 102:107766. [DOI: 10.1016/j.jmgm.2020.107766] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 09/14/2020] [Accepted: 09/28/2020] [Indexed: 01/17/2023]
|
8
|
Saeed A, Muhammad S, Rehman SU, Bibi S, Al-Sehemi AG, Khalid M. Exploring the impact of central core modifications among several push-pull configurations to enhance nonlinear optical response. J Mol Graph Model 2020; 100:107665. [PMID: 32682308 DOI: 10.1016/j.jmgm.2020.107665] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2020] [Revised: 06/01/2020] [Accepted: 06/02/2020] [Indexed: 11/26/2022]
Abstract
The present study explores a series of novel donor-π-acceptor (D-π-A) molecules containing 4,4'-dimethyldiphenylamine moiety as donor, 4,4'-dinitrodiphenylborane as acceptor while different π-bridges as efficient linkers between them, which comprises of (-HCCH-)n, (-Ph-)n and (-Ph ̶ HCCH-)n combinations for compounds in series 1, 2 and 3, respectively. Quantum chemical computations are applied to calculate the linear polarizability (α), first (β) and second (γ) hyperpolarizabilities. A comparative analysis is performed considering an increase of NLO polarizabilities as a function of different π-linkers. Among the investigated compounds, 3c shows the largest first and second hyperpolarizabilities of 1378 × 10-30 and 34971 × 10-36 esu, respectively. Interestingly, an increase in NLO polarizability is observed by modifying the π-conjugated bridges and the largest NLO polarizability is observed for series 3 possessing (Ph ̶ HCCH-)n π-linker which is found due to its lower transition energy and higher oscillator strengths. Furthermore, TD-DFT investigations, frontier molecular orbitals (FMOs) and electron density difference (EDD) maps analysis have shown a more efficient intramolecular charge transfer character from donor to acceptor moieties through (Ph ̶ HCCH-)n π-linkers. The density of states (DOS) maps are showing explicit contributions of electronic states from different fragments of a molecular system where the partial contributions of (Ph ̶ HCCH-)n π-linkers is seen significant in HOMO-LUMO orbitals of all the systems in series number 3. Thus, we believe that our study will highlight the importance of different D-π-A chromophores having variant types of π-conjugation cores as discussed in the present investigation.
Collapse
Affiliation(s)
- Aqsa Saeed
- Department of Chemistry, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan
| | - Shabbir Muhammad
- Research Center for Advanced Materials Science (RCAMS), King Khalid University, Abha, 61413, P.O. Box 9004, Saudi Arabia; Department of Physics, College of Science, King Khalid University, Abha, 61413, P.O. Box 9004, Saudi Arabia
| | - Shafiq-Ur Rehman
- Department of Chemistry, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan.
| | - Shamsa Bibi
- Department of Chemistry, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan.
| | - Abdullah G Al-Sehemi
- Department of Chemistry, College of Science, King Khalid University, Abha, 61413, P.O. Box 9004, Saudi Arabia
| | - Muhammad Khalid
- Department of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan
| |
Collapse
|
9
|
Mohan B, Choudhary M, Muhammad S, Das N, Singh K, Jana A, Bharti S, Algarni H, Al-Sehemi AG, Kumar S. Synthesis, characterizations, crystal structures, and theoretical studies of copper(II) and nickel(II) coordination complexes. J COORD CHEM 2020. [DOI: 10.1080/00958972.2020.1761961] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Bharti Mohan
- Department of Chemistry, National Institute of Technology, Patna, Bihar, India
| | - Mukesh Choudhary
- Department of Chemistry, National Institute of Technology, Patna, Bihar, India
| | - Shabbir Muhammad
- Department of Physics, College of Science, King Khalid University, Abha, Saudi Arabia
- Research Center for Advanced Materials Science, King Khalid University, Abha, Saudi Arabia
| | - Neeladri Das
- Department of Chemistry, Indian Institute of Technology, Patna, Bihar, India
| | - Khushwant Singh
- Department of Chemistry, Indian Institute of Technology, Patna, Bihar, India
| | - Achintya Jana
- Department of Chemistry, Indian Institute of Technology, Patna, Bihar, India
| | - Sulakshna Bharti
- Department of Chemistry, National Institute of Technology, Patna, Bihar, India
| | - H. Algarni
- Department of Physics, College of Science, King Khalid University, Abha, Saudi Arabia
| | - Abdullah G. Al-Sehemi
- Research Center for Advanced Materials Science, King Khalid University, Abha, Saudi Arabia
- Department of Chemistry, College of Science, King Khalid University, Abha, Saudi Arabia
| | - Santosh Kumar
- Division of Chemical Engineering, Konkuk University, Gwangjin-gu, Seoul, South Korea
| |
Collapse
|
10
|
Sajjad Hussain, Muhammad S, Chen X, Akkurt M, Alshehri AM, Din SU, Ullah H, Al-Sehemi AG. Synthesis, Crystal Structure, and Nonlinear Optical Properties of Zn(II) Complex with 4,4',4''-Tri-tert-Butyl-2,2':6',2''-Terpyridine: A Dual Exploration. RUSS J INORG CHEM+ 2020. [DOI: 10.1134/s0036023620030067] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
11
|
Al-Fulaij OA, Elassar AZA, Dawood KM. Synthesis and characterization of new 3,3`-bipyrazole-4,4`-dicarboxylic acid derivatives and some of their palladium(II) complexes as pre-catalyst for Suzuki coupling reaction in water. ACTA ACUST UNITED AC 2019. [DOI: 10.5155/eurjchem.10.4.367-375.1915] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The 1,3-dipolar cycloaddition reaction of bis-hydrazonyl chlorides with methyl propiolate afforded dimethyl 1,1¢-aryl-3,3`-bipyrazole-4,4`-dicarboxylates (5a,b). Heating the later compound 5a with a mixture of HCl/AcOH gave 3,3`-bipyrazole-5,5`-dicarboxylic acid derivative 6. Treatment of the hydrazonoyl chloride (1a) and 3,3`-bipyrazole-5,5`-dicarboxylic acid (6) with palladium(II) chloride gave the corresponding Pd-complexes 7 and 8, respectively. The catalytic activity of the prepared Pd-complexes was examined in the Suzuki cross-coupling reaction of phenylboronic acid with activated and deactivated aryl(hetaryl) bromides. The catalyst system provides very good to excellent yields, 85-94%. The structures of the obtained products were established from their elemental analysis, spectral data, XPS, EDX, and single crystal X-ray crystallography. Crystal data for C10H7N2O2 (6): triclinic, space group P-1 (no. 2), a = 3.9956(10) Å, b = 9.8917(18) Å, c = 10.810(3) Å, α = 94.167(15)°, β = 94.979(19)°, γ = 98.953(15)°, V = 418.83(16) Å3, Z = 2, T = 296.(2) K, μ(Cu Kα) = 0.887 mm-1, Dcalc = 1.484 g/cm3, 5469 reflections measured (11.72° ≤ 2Θ ≤ 133.24°), 1420 unique (Rint = 0.0633, Rsigma = 7.24%) which were used in all calculations. The final R1 was 0.1055 (>2sigma(I)) and wR2 was 0.3620 (all data).
Collapse
Affiliation(s)
| | | | - Kamal Mohamed Dawood
- Chemistry Department, Faculty of Science, Kuwait University, Safat-13060, Kuwait
| |
Collapse
|