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Hung SC, Wang YT, Tseng MH. An Interpretable Three-Dimensional Artificial Intelligence Model for Computer-Aided Diagnosis of Lung Nodules in Computed Tomography Images. Cancers (Basel) 2023; 15:4655. [PMID: 37760624 PMCID: PMC10526230 DOI: 10.3390/cancers15184655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 09/16/2023] [Accepted: 09/17/2023] [Indexed: 09/29/2023] Open
Abstract
Lung cancer is typically classified into small-cell carcinoma and non-small-cell carcinoma. Non-small-cell carcinoma accounts for approximately 85% of all lung cancers. Low-dose chest computed tomography (CT) can quickly and non-invasively diagnose lung cancer. In the era of deep learning, an artificial intelligence (AI) computer-aided diagnosis system can be developed for the automatic recognition of CT images of patients, creating a new form of intelligent medical service. For many years, lung cancer has been the leading cause of cancer-related deaths in Taiwan, with smoking and air pollution increasing the likelihood of developing the disease. The incidence of lung adenocarcinoma in never-smoking women has also increased significantly in recent years, resulting in an important public health problem. Early detection of lung cancer and prompt treatment can help reduce the mortality rate of patients with lung cancer. In this study, an improved 3D interpretable hierarchical semantic convolutional neural network named HSNet was developed and validated for the automatic diagnosis of lung cancer based on a collection of lung nodule images. The interpretable AI model proposed in this study, with different training strategies and adjustment of model parameters, such as cyclic learning rate and random weight averaging, demonstrated better diagnostic performance than the previous literature, with results of a four-fold cross-validation procedure showing calcification: 0.9873 ± 0.006, margin: 0.9207 ± 0.009, subtlety: 0.9026 ± 0.014, texture: 0.9685 ± 0.006, sphericity: 0.8652 ± 0.021, and malignancy: 0.9685 ± 0.006.
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Affiliation(s)
- Sheng-Chieh Hung
- Master Program in Medical Informatics, Chung Shan Medical University, Taichung 402, Taiwan;
| | - Yao-Tung Wang
- School of Medicine, Chung Shan Medical University, Taichung 402, Taiwan;
- Division of Pulmonary Medicine, Department of Internal Medicine, Chung Shan Medical University Hospital, Taichung 402, Taiwan
| | - Ming-Hseng Tseng
- Master Program in Medical Informatics, Chung Shan Medical University, Taichung 402, Taiwan;
- Department of Medical Informatics, Chung Shan Medical University, Taichung 402, Taiwan
- Information Technology Office, Chung Shan Medical University Hospital, Taichung 402, Taiwan
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Shivwanshi RR, Nirala N. Hyperparameter optimization and development of an advanced CNN-based technique for lung nodule assessment. Phys Med Biol 2023; 68:175038. [PMID: 37567211 DOI: 10.1088/1361-6560/acef8c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 08/11/2023] [Indexed: 08/13/2023]
Abstract
Objective. This paper aims to propose an advanced methodology for assessing lung nodules using automated techniques with computed tomography (CT) images to detect lung cancer at an early stage.Approach. The proposed methodology utilizes a fixed-size 3 × 3 kernel in a convolution neural network (CNN) for relevant feature extraction. The network architecture comprises 13 layers, including six convolution layers for deep local and global feature extraction. The nodule detection architecture is enhanced by incorporating a transfer learning-based EfficientNetV_2 network (TLEV2N) to improve training performance. The classification of nodules is achieved by integrating the EfficientNet_V2 architecture of CNN for more accurate benign and malignant classification. The network architecture is fine-tuned to extract relevant features using a deep network while maintaining performance through suitable hyperparameters.Main results. The proposed method significantly reduces the false-negative rate, with the network achieving an accuracy of 97.56% and a specificity of 98.4%. Using the 3 × 3 kernel provides valuable insights into minute pixel variation and enables the extraction of information at a broader morphological level. The continuous responsiveness of the network to fine-tune initial values allows for further optimization possibilities, leading to the design of a standardized system capable of assessing diversified thoracic CT datasets.Significance. This paper highlights the potential of non-invasive techniques for the early detection of lung cancer through the analysis of low-dose CT images. The proposed methodology offers improved accuracy in detecting lung nodules and has the potential to enhance the overall performance of early lung cancer detection. By reconfiguring the proposed method, further advancements can be made to optimize outcomes and contribute to developing a standardized system for assessing diverse thoracic CT datasets.
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Field EL, Tam W, Moore N, McEntee M. Efficacy of Artificial Intelligence in the Categorisation of Paediatric Pneumonia on Chest Radiographs: A Systematic Review. CHILDREN 2023; 10:children10030576. [PMID: 36980134 PMCID: PMC10047666 DOI: 10.3390/children10030576] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 03/04/2023] [Accepted: 03/15/2023] [Indexed: 03/19/2023]
Abstract
This study aimed to systematically review the literature to synthesise and summarise the evidence surrounding the efficacy of artificial intelligence (AI) in classifying paediatric pneumonia on chest radiographs (CXRs). Following the initial search of studies that matched the pre-set criteria, their data were extracted using a data extraction tool, and the included studies were assessed via critical appraisal tools and risk of bias. Results were accumulated, and outcome measures analysed included sensitivity, specificity, accuracy, and area under the curve (AUC). Five studies met the inclusion criteria. The highest sensitivity was by an ensemble AI algorithm (96.3%). DenseNet201 obtained the highest level of specificity and accuracy (94%, 95%). The most outstanding AUC value was achieved by the VGG16 algorithm (96.2%). Some of the AI models achieved close to 100% diagnostic accuracy. To assess the efficacy of AI in a clinical setting, these AI models should be compared to that of radiologists. The included and evaluated AI algorithms showed promising results. These algorithms can potentially ease and speed up diagnosis once the studies are replicated and their performances are assessed in clinical settings, potentially saving millions of lives.
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Affiliation(s)
- Erica Louise Field
- Discipline of Medical Imaging and Radiation Therapy, University College Cork, College Road, T12 K8AF Cork, Ireland
| | - Winnie Tam
- Department of Midwifery and Radiography, University of London, Northampton Square, London EC1V 0HB, UK
- Correspondence:
| | - Niamh Moore
- Discipline of Medical Imaging and Radiation Therapy, University College Cork, College Road, T12 K8AF Cork, Ireland
| | - Mark McEntee
- Discipline of Medical Imaging and Radiation Therapy, University College Cork, College Road, T12 K8AF Cork, Ireland
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Liu J, Cao L, Akin O, Tian Y. Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation. FRONTIERS IN RADIOLOGY 2022; 2:1041518. [PMID: 37492669 PMCID: PMC10365286 DOI: 10.3389/fradi.2022.1041518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2022] [Accepted: 11/28/2022] [Indexed: 07/27/2023]
Abstract
Medical imaging data annotation is expensive and time-consuming. Supervised deep learning approaches may encounter overfitting if trained with limited medical data, and further affect the robustness of computer-aided diagnosis (CAD) on CT scans collected by various scanner vendors. Additionally, the high false-positive rate in automatic lung nodule detection methods prevents their applications in daily clinical routine diagnosis. To tackle these issues, we first introduce a novel self-learning schema to train a pre-trained model by learning rich feature representatives from large-scale unlabeled data without extra annotation, which guarantees a consistent detection performance over novel datasets. Then, a 3D feature pyramid network (3DFPN) is proposed for high-sensitivity nodule detection by extracting multi-scale features, where the weights of the backbone network are initialized by the pre-trained model and then fine-tuned in a supervised manner. Further, a High Sensitivity and Specificity (HS2 ) network is proposed to reduce false positives by tracking the appearance changes among continuous CT slices on Location History Images (LHI) for the detected nodule candidates. The proposed method's performance and robustness are evaluated on several publicly available datasets, including LUNA16, SPIE-AAPM, LungTIME, and HMS. Our proposed detector achieves the state-of-the-art result of 90.6 % sensitivity at 1 / 8 false positive per scan on the LUNA16 dataset. The proposed framework's generalizability has been evaluated on three additional datasets (i.e., SPIE-AAPM, LungTIME, and HMS) captured by different types of CT scanners.
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Affiliation(s)
- Jingya Liu
- The City College of New York, New York, NY, USA
| | | | - Oguz Akin
- Memorial Sloan Kettering Cancer Center, New York, NY, USA
| | - Yingli Tian
- The City College of New York, New York, NY, USA
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Computer-Aided Diagnosis of Pulmonary Nodules in Rheumatoid Arthritis. Life (Basel) 2022; 12:life12111935. [PMID: 36431070 PMCID: PMC9697803 DOI: 10.3390/life12111935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 11/17/2022] [Accepted: 11/18/2022] [Indexed: 11/22/2022] Open
Abstract
(1) Background: Rheumatoid arthritis (RA) is considered a systemic inflammatory pathology characterized by symmetric polyarthritis associated with extra-articular manifestations, such as lung disease. The purpose of the present study is to use CAD in the detection of rheumatoid pulmonary nodules. In addition, we aim to identify the characteristics and associations between clinical, laboratory and imaging data in patients with rheumatoid arthritis and lung nodules. (2) Methods: The study included a number of 42 patients diagnosed with rheumatoid arthritis according to the 2010 American College of Rheumatology (ACR)/European League Against Rheumatism (EULAR) criteria, examined from January 2017 to November 2022 in the Departments of Rheumatology and Radiology and Medical Imaging of the University of Medicine and Pharmacy of Craiova. Medical records were reviewed. A retrospective blinded review of CT for biopsy-proven pulmonary nodules in RA using Veolity LungCAD software was performed (MeVis Medical Solutions AG, Bremen, Germany). Imaging was also reviewed by a senior radiologist. (3) Results: The interobserver agreement proved to be moderate (κ = 0.478) for the overall examined cases. CAD interpretation resulted in false positive results in the case of 12 lung nodules, whereas false negative results were reported in the case of 8 lung nodules. The mean time it took for the detection of lung nodules using CAD was 4.2 min per patient, whereas the detection of lung nodules by the radiologist was 8.1 min per patient. This resulted in a faster interpretation of lung CT scans, almost reducing the detection time by half (p < 0.001). (4) Conclusions: The CAD software is useful in identifying lung nodules, in shortening the interpretation time of the CT examination and also in aiding the radiologist in better assessing all the pulmonary lung nodules. However, the CAD software cannot replace the human eye yet due to the relative high rate of false positive and false negative results.
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Two-Stage Deep Learning Method for Breast Cancer Detection Using High-Resolution Mammogram Images. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12094616] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Breast cancer screening and detection using high-resolution mammographic images have always been a difficult task in computer vision due to the presence of very small yet clinically significant abnormal growths in breast masses. The size difference between such masses and the overall mammogram image as well as difficulty in distinguishing intra-class features of the Breast Imaging Reporting and Database System (BI-RADS) categories creates challenges for accurate diagnosis. To obtain near-optimal results, object detection models should be improved by directly focusing on breast cancer detection. In this work, we propose a new two-stage deep learning method. In the first stage, the breast area is extracted from the mammogram and small square patches are generated to narrow down the region of interest (RoI). In the second stage, breast masses are detected and classified into BI-RADS categories. To improve the classification accuracy for intra-classes, we design an effective tumor classification model and combine its results with the detection model’s classification scores. Experiments conducted on the newly collected high-resolution mammography dataset demonstrate our two-stage method outperforms the original Faster R-CNN model by improving mean average precision (mAP) from 0.85 to 0.94. In addition, comparisons with existing works on a popular INbreast dataset validate the performance of our two-stage model.
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Development of computer-aided model to differentiate COVID-19 from pulmonary edema in lung CT scan: EDECOVID-net. Comput Biol Med 2021; 141:105172. [PMID: 34973585 PMCID: PMC8712746 DOI: 10.1016/j.compbiomed.2021.105172] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 12/21/2021] [Accepted: 12/21/2021] [Indexed: 01/08/2023]
Abstract
The efforts made to prevent the spread of COVID-19 face specific challenges in diagnosing COVID-19 patients and differentiating them from patients with pulmonary edema. Although systemically administered pulmonary vasodilators and acetazolamide are of great benefit for treating pulmonary edema, they should not be used to treat COVID-19 as they carry the risk of several adverse consequences, including worsening the matching of ventilation and perfusion, impaired carbon dioxide transport, systemic hypotension, and increased work of breathing. This study proposes a machine learning-based method (EDECOVID-net) that automatically differentiates the COVID-19 symptoms from pulmonary edema in lung CT scans using radiomic features. To the best of our knowledge, EDECOVID-net is the first method to differentiate COVID-19 from pulmonary edema and a helpful tool for diagnosing COVID-19 at early stages. The EDECOVID-net has been proposed as a new machine learning-based method with some advantages, such as having simple structure and few mathematical calculations. In total, 13 717 imaging patches, including 5759 COVID-19 and 7958 edema images, were extracted using a CT incision by a specialist radiologist. The EDECOVID-net can distinguish the patients with COVID-19 from those with pulmonary edema with an accuracy of 0.98. In addition, the accuracy of the EDECOVID-net algorithm is compared with other machine learning methods, such as VGG-16 (Acc = 0.94), VGG-19 (Acc = 0.96), Xception (Acc = 0.95), ResNet101 (Acc = 0.97), and DenseNet20l (Acc = 0.97).
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Polat H, Özerdem MS, Ekici F, Akpolat V. Automatic detection and localization of COVID-19 pneumonia using axial computed tomography images and deep convolutional neural networks. INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY 2021; 31:509-524. [PMID: 33821092 PMCID: PMC8013431 DOI: 10.1002/ima.22558] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 01/09/2021] [Accepted: 01/27/2021] [Indexed: 05/13/2023]
Abstract
COVID-19 was first reported as an unknown group of pneumonia in Wuhan City, Hubei province of China in late December of 2019. The rapid increase in the number of cases diagnosed with COVID-19 and the lack of experienced radiologists can cause diagnostic errors in the interpretation of the images along with the exceptional workload occurring in this process. Therefore, the urgent development of automated diagnostic systems that can scan radiological images quickly and accurately is important in combating the pandemic. With this motivation, a deep convolutional neural network (CNN)-based model that can automatically detect patterns related to lesions caused by COVID-19 from chest computed tomography (CT) images is proposed in this study. In this context, the image ground-truth regarding the COVID-19 lesions scanned by the radiologist was evaluated as the main criteria of the segmentation process. A total of 16 040 CT image segments were obtained by applying segmentation to the raw 102 CT images. Then, 10 420 CT image segments related to healthy lung regions were labeled as COVID-negative, and 5620 CT image segments, in which the findings related to the lesions were detected in various forms, were labeled as COVID-positive. With the proposed CNN architecture, 93.26% diagnostic accuracy performance was achieved. The sensitivity and specificity performance metrics for the proposed automatic diagnosis model were 93.27% and 93.24%, respectively. Additionally, it has been shown that by scanning the small regions of the lungs, COVID-19 pneumonia can be localized automatically with high resolution and the lesion densities can be successfully evaluated quantitatively.
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Affiliation(s)
- Hasan Polat
- Department of Electrical and EnergyBingol UniversityBingölTurkey
| | - Mehmet Siraç Özerdem
- Department of Electrical and Electronics EngineeringDicle UniversityDiyarbakırTurkey
| | - Faysal Ekici
- Department of RadiologyDicle UniversityDiyarbakırTurkey
| | - Veysi Akpolat
- Department of BiophysicsDicle UniversityDiyarbakırTurkey
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Calheiros JLL, de Amorim LBV, de Lima LL, de Lima Filho AF, Ferreira Júnior JR, de Oliveira MC. The Effects of Perinodular Features on Solid Lung Nodule Classification. J Digit Imaging 2021; 34:798-810. [PMID: 33791910 DOI: 10.1007/s10278-021-00453-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Revised: 02/11/2021] [Accepted: 03/22/2021] [Indexed: 12/09/2022] Open
Abstract
Lung cancer is the most lethal malignant neoplasm worldwide, with an annual estimated rate of 1.8 million deaths. Computed tomography has been widely used to diagnose and detect lung cancer, but its diagnosis remains an intricate and challenging work, even for experienced radiologists. Computer-aided diagnosis tools and radiomics tools have provided support to the radiologist's decision, acting as a second opinion. The main focus of these tools has been to analyze the intranodular zone; nevertheless, recent works indicate that the interaction between the nodule and its surroundings (perinodular zone) could be relevant to the diagnosis process. However, only a few works have investigated the importance of specific attributes of the perinodular zone and have shown how important they are in the classification of lung nodules. In this context, the purpose of this work is to evaluate the impact of using the perinodular zone on the characterization of lung lesions. Motivated by reproducible research, we used a large public dataset of solid lung nodule images and extracted fine-tuned radiomic attributes from the perinodular and intranodular zones. Our best-evaluated model obtained an average AUC of 0.916, an accuracy of 84.26%, a sensitivity of 84.45%, and specificity of 83.84%. The combination of attributes from the perinodular and intranodular zones in the image characterization resulted in an improvement in all the metrics analyzed when compared to intranodular-only characterization. Therefore, our results highlighted the importance of using the perinodular zone in the solid pulmonary nodules classification process.
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Affiliation(s)
| | | | - Lucas Lins de Lima
- Computing Institute, Federal University of Alagoas (UFAL), Maceió, AL, Brazil
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Radiologic Assessment of Osteosarcoma Lung Metastases: State of the Art and Recent Advances. Cells 2021; 10:cells10030553. [PMID: 33806513 PMCID: PMC7999261 DOI: 10.3390/cells10030553] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 02/28/2021] [Accepted: 03/02/2021] [Indexed: 12/14/2022] Open
Abstract
The lung is the most frequent site of osteosarcoma (OS) metastases, which are a critical point in defining a patient’s prognosis. Chest computed tomography (CT) represents the gold standard for the detection of lung metastases even if its sensitivity widely ranges in the literature since lung localizations are often atypical. ESMO guidelines represent one of the major references for the follow-up program of OS patients. The development of new reconstruction techniques, such as the iterative method and the deep learning-based image reconstruction (DLIR), has led to a significant reduction of the radiation dose with the low-dose CT. The improvement of these techniques has great importance considering the young-onset of the disease and the strict chest surveillance during follow-up programs. The use of 18F-fluorodeoxyglucose (FDG) positron emission tomography (PET)/CT is still controversial, while volume doubling time (VDT) and computer-aided diagnosis (CAD) systems are recent diagnostic tools that could support radiologists for lung nodules evaluation. Their use, well-established for other malignancies, needs to be further evaluated, focusing on OS patients.
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Pantanowitz A, Cohen E, Gradidge P, Crowther N, Aharonson V, Rosman B, Rubin D. Estimation of Body Mass Index from photographs using deep Convolutional Neural Networks. INFORMATICS IN MEDICINE UNLOCKED 2021. [DOI: 10.1016/j.imu.2021.100727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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