Ground truthing from multi-rater labeling with three-way decision and possibility theory

Perineuronal Net Microscopy: From Brain Pathology to Artificial Intelligence

Perineuronal nets (PNN) are a special highly structured type of extracellular matrix encapsulating synapses on large populations of CNS neurons. PNN undergo structural changes in schizophrenia, epilepsy, Alzheimer's disease, stroke, post-traumatic conditions, and some other brain disorders. The functional role of the PNN microstructure in brain pathologies has remained largely unstudied until recently. Here, we review recent research implicating PNN microstructural changes in schizophrenia and other disorders. We further concentrate on high-resolution studies of the PNN mesh units surrounding synaptic boutons to elucidate fine structural details behind the mutual functional regulation between the ECM and the synaptic terminal. We also review some updates regarding PNN as a potential pharmacological target. Artificial intelligence (AI)-based methods are now arriving as a new tool that may have the potential to grasp the brain's complexity through a wide range of organization levels-from synaptic molecular events to large scale tissue rearrangements and the whole-brain connectome function. This scope matches exactly the complex role of PNN in brain physiology and pathology processes, and the first AI-assisted PNN microscopy studies have been reported. To that end, we report here on a machine learning-assisted tool for PNN mesh contour tracing.

IMFSegNet: Cost-effective and objective quantification of intramuscular fat in histological sections by deep learning

The assessment of muscle condition is of great importance in various research areas. In particular, evaluating the degree of intramuscular fat (IMF) in tissue sections is a challenging task, which today is still mostly performed qualitatively or quantitatively by a highly subjective and error-prone manual analysis. We here realize the mission to make automated IMF analysis possible that (i) minimizes subjectivity, (ii) provides accurate and quantitative results quickly, and (iii) is cost-effective using standard hematoxylin and eosin (H&E) stained tissue sections. To address all these needs in a deep learning approach, we utilized the convolutional encoder-decoder network SegNet to train the specialized network IMFSegNet allowing to accurately quantify the spatial distribution of IMF in histological sections. Our fully automated analysis was validated on 17 H&E-stained muscle sections from individual sheep and compared to various state-of-the-art approaches. Not only does IMFSegNet outperform all other approaches, but this neural network also provides fully automated and highly accurate results utilizing the most cost-effective procedures of sample preparation and imaging. Furthermore, we shed light on the opacity of black-box approaches such as neural networks by applying an explainable artificial intelligence technique to clarify that the success of IMFSegNet actually lies in identifying the hard-to-detect IMF structures. Embedded in our open-source visual programming language JIPipe that does not require programming skills, it can be expected that IMFSegNet advances muscle condition assessment in basic research across multiple areas as well as in research fields focusing on translational clinical applications.

The Issue of Proxies and Choice Architectures. Why EU Law Matters for Recommender Systems

Recommendations are meant to increase sales or ad revenue, as these are the first priority of those who pay for them. As recommender systems match their recommendations with inferred preferences, we should not be surprised if the algorithm optimizes for lucrative preferences and thus co-produces the preferences they mine. This relates to the well-known problems of feedback loops, filter bubbles, and echo chambers. In this article, I discuss the implications of the fact that computing systems necessarily work with proxies when inferring recommendations and raise a number of questions about whether recommender systems actually do what they are claimed to do, while also analysing the often-perverse economic incentive structures that have a major impact on relevant design decisions. Finally, I will explain how the choice architectures for data controllers and providers of AI systems as foreseen in the EU's General Data Protection Regulation (GDPR), the proposed EU Digital Services Act (DSA) and the proposed EU AI Act will help to break through various vicious circles, by constraining how people may be targeted (GDPR, DSA) and by requiring documented evidence of the robustness, resilience, reliability, and the responsible design and deployment of high-risk recommender systems (AI Act).

Unity Is Intelligence: A Collective Intelligence Experiment on ECG Reading to Improve Diagnostic Performance in Cardiology

Medical errors have a huge impact on clinical practice in terms of economic and human costs. As a result, technology-based solutions, such as those grounded in artificial intelligence (AI) or collective intelligence (CI), have attracted increasing interest as a means of reducing error rates and their impacts. Previous studies have shown that a combination of individual opinions based on rules, weighting mechanisms, or other CI solutions could improve diagnostic accuracy with respect to individual doctors. We conducted a study to investigate the potential of this approach in cardiology and, more precisely, in electrocardiogram (ECG) reading. To achieve this aim, we designed and conducted an experiment involving medical students, recent graduates, and residents, who were asked to annotate a collection of 10 ECGs of various complexity and difficulty. For each ECG, we considered groups of increasing size (from three to 30 members) and applied three different CI protocols. In all cases, the results showed a statistically significant improvement (ranging from 9% to 88%) in terms of diagnostic accuracy when compared to the performance of individual readers; this difference held for not only large groups, but also smaller ones. In light of these results, we conclude that CI approaches can support the tasks mentioned above, and possibly other similar ones as well. We discuss the implications of applying CI solutions to clinical settings, such as cases of augmented ‘second opinions’ and decision-making.

Three-Way Decision for Handling Uncertainty in Machine Learning: A Narrative Review

In this work we introduce a framework, based on three-way decision (TWD) and the trisecting-acting-outcome model, to handle uncertainty in Machine Learning (ML). We distinguish between handling uncertainty affecting the input of ML models, when TWD is used to identify and properly take into account the uncertain instances; and handling the uncertainty lying in the output, where TWD is used to allow the ML model to abstain. We then present a narrative review of the state of the art of applications of TWD in regard to the different areas of concern identified by the framework, and in so doing, we will highlight both the points of strength of the three-way methodology, and the opportunities for further research.