Multiply-charged negative clusters of adenosine-5'-monophosphate in the gas phase

Laser desorption vs. electrospray of polyyne-threaded rotaxanes: Preventing covalent cross-linking and promoting noncovalent aggregation

Laser-induced cross-linking of polyynes is successfully hindered when the polyyne is encapsulated as part of a rotaxane and therefore protected by a surrounding macrocycle. When the rotaxane is electrosprayed, however, noncovalent aggregate ions are efficiently formed. Aggregates of considerable size (including more than 50 rotaxane molecules with masses beyond 100k Da) and charge states (up to 13 charges and beyond) have been observed. Either protons or sodium cations act as the charge carriers. These aggregates are not formed when the individual components of the rotaxane, i.e., the macrocycle or the polyyne, are separately electrosprayed. This underlines the structural importance of the rotaxane for the aggregate formation. Straightforward force field calculations indicate that the polyyne thread hinders the folding of the macrocycles, which facilitates the bonding interaction between the two components.

Serine-phosphoric acid cluster ions studied by electrospray ionization and tandem mass spectrometry

More than 310 kinds of cluster ions of S(m) P(n) H(k) (k+) are observed in a single ESI mass spectrum of a mixed solution of serine and phosphoric acid. Some typical cluster ions are selected, activated by collision in a FT ICR cell, and the dissociation pathways were deduced in detail. For large singly protonated ions, the collisions cause the ejection of subunits of serine or phosphoric acid subsequently producing the ions of S(2) P(4) H(1) (1+) , which can be further dissociated by the loss of phosphoric acid molecules in turn and form the protonated serine dimer and monomer. However, for the doubly protonated ions, the dissociation pathways change from the loss of a protonated serine dimer for the ions of S(7) P(9) H(2) (2+) to the neutral loss of H(3) PO(4) for the ions of S(7) P(12) H(2) (2+) or the neutral loss of serine or H(3) PO(4) for the larger clusters, indicating the effect of cluster sizes on the process of dissociation. The structure of S(2) P(4) H(1) (1+) is suggested based on B3LYP/6-31G(d,p) calculations. The diversity and structural orderliness of the hetero-cluster ions are mainly attributed to the network of hydrogen bonds inside the cluster ions and the extraordinary amphotericity of the components.

Fragmentation of the tryptophan cluster [Trp9-2H]2- induced by different activation methods

Electrospray ionization (ESI) of tryptophan gives rise to multiply charged, non-covalent tryptophan cluster anions, [Trp(n)-xH](x-), in a linear ion trap mass spectrometer, as confirmed by high-resolution experiments performed on a Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. The smallest multiply charged clusters that can be formed in the linear ion trap as a function of charge state are: x = 2, n = 7; x = 3, n = 16; x = 4, n = 31. The fragmentation of the dianionic cluster [Trp(9)-2H](2-) was examined via low-energy collision-induced dissociation (CID), ultraviolet photodissociation (UVPD) at 266  nm and electron-induced dissociation (EID) at electron energies ranging from >0 to 30  eV. CID proceeds mostly via charge separation and evaporation of neutral tryptophan. The smallest doubly charged cluster that can be formed via evaporation of neutral tryptophans is [Trp(7)-2H](2-), consistent with the observation of this cluster in the ESI mass spectrum. UVPD gives singly charged tryptophan clusters ranging from n = 2 to n = 9. The latter ion arises from ejection of an electron to give the radical anion cluster, [Trp(9)-2H](-·). The types of gas-phase EID reactions observed are dependent on the energy of the electrons. Loss of neutral tryptophan is an important channel at lower energies, with the smallest doubly charged ion, [Trp(7)-2H](2-), being observed at 19.8  eV. Coulomb explosion starts to occur at 19.8  eV to form the singly charged cluster ions [Trp(x)-H](-) (x = 1-8) via highly asymmetric fission. At 21.8  eV a small amount of [Trp(2)-H-NH(3)](-) is observed. Thus CID, UVPD and EID are complementary techniques for the study of the fragmentation reactions of cluster ions.

Direct quantitation of peptide mixtures without standards using clusters formed by electrospray ionization mass spectrometry

In electrospray ionization mass spectrometry, ion abundances depend on a number of different factors, including analyte surface activity, competition between analytes for charge, analyte concentration, as well as instrumental factors, including mass-dependent ion transmission and detection. Here, a novel method for obtaining quantitative information about solution-phase concentrations of peptide mixtures is described and demonstrated for five different peptide mixtures with relative concentrations ranging from 0.05% to 50%. In this method, the abundances of large clusters containing anywhere from 0 to 13 impurity molecules are measured and directly related to the relative solution-phase concentration of the peptides. For clusters containing approximately 15 or more peptides, the composition of the clusters approaches the statistical value indicating that these clusters are formed nonspecifically and that any differences in ion detection or ionization efficiency are negligible at these large cluster sizes. This method is accurate to within approximately 20% or better, even when the relative ion intensities of the protonated monomers can differ by over an order of magnitude compared to their solution-phase concentrations. Although less accurate than other quantitation methods that employ internal standards, this method does have the key advantages of speed, simplicity, and the ability to quantitate components in solution even when the identities of the components are unknown.