1
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Jiang Z, He Y, Zeng M, Zhang Y, Xu X, Zhang M. Revealing critical functional enzymes in anammox nitrogen removal and rate-limiting step in catalytic pathways: Insight into metaproteomics and density functional theory. BIORESOURCE TECHNOLOGY 2024; 406:131090. [PMID: 38986880 DOI: 10.1016/j.biortech.2024.131090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2024] [Revised: 07/06/2024] [Accepted: 07/06/2024] [Indexed: 07/12/2024]
Abstract
To reveal the key enzymes in the nitrogen removal pathway and to further elucidate the mechanism of the catalytic reaction, this study utilized metaproteomics combined with molecular dynamics and density functional theory calculation. K. stuttgartiensis provided the proteins up to 88.37 % in the anammox-based system. Hydrazine synthase (HZS) and hydrazine dehydrogenase (HDH) accounted for 15.94 % and 3.45 % of the total proteins expressed by K. stuttgartiensis, thus were considered as critical enzymes in the nitrogen removal pathway. The process of HZSγ binding to NO with lowest binding free energy of -4.91 ± 1.33 kJ/mol. The reaction catalyzed by HZSα was calculated to be the rate-limiting catalyzing step, because it transferred the proton from NH3 to ·OH by crossing an energy barrier of up to 190.29 kJ/mol. This study provided molecular level insights to enhance the performance of nitrogen removal in anammox-based system.
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Affiliation(s)
- Zhicheng Jiang
- College of Marine and Environmental Sciences, Tianjin University of Science & Technology, Tianjin, China
| | - Yuhang He
- College of Marine and Environmental Sciences, Tianjin University of Science & Technology, Tianjin, China
| | - Ming Zeng
- College of Marine and Environmental Sciences, Tianjin University of Science & Technology, Tianjin, China.
| | - Yinqing Zhang
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, China.
| | - Xinxin Xu
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, China
| | - Meng Zhang
- Department of Environmental Engineering, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, China
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2
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Xiao C, Wan K, Hu J, Deng X, Liu X, Zhou F, Yu J, Chi R. Performance changes in the anammox process under the stress of rare-earth element Ce(III) and the evolution of microbial community and functional genes. BIORESOURCE TECHNOLOGY 2023:129349. [PMID: 37336455 DOI: 10.1016/j.biortech.2023.129349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 06/14/2023] [Accepted: 06/16/2023] [Indexed: 06/21/2023]
Abstract
The high Ce(III) content in ionic rare-earth tailings wastewater has hindered the application of anammox process in this field. Here, the effect of Ce(III) on the performance of anammox processes was investigated, and the evolution of microbial communities and functional genes was explored using metagenomic sequencing. The results showed that the reactor nitrogen removal rate decreased when the Ce(III) concentration reached 25 mg/L, although ammonia nitrogen removal (92.31%) and nitrogen removal efficiency (81.33%) remained at a high level; however, both showed a significant decreasing trend. The relative abundance of anammox bacteria increased continuously from P1-P5, reaching 48.81%, whereas the relative abundance of Candidatus jettenia reached 33.71% at P5, which surpassed that of Candidatus brocadia as the most abundant anammox bacteria, and further analysis of functional genes and metabolic pathways revealed that Candidatus brocadia was richer in biochemical metabolic genes, whereas Candidatus jettenia had richer efflux genes.
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Affiliation(s)
- Chunqiao Xiao
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China; Hubei Three Gorges Laboratory, Yichang 443007, China.
| | - Kai Wan
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China; Hubei Three Gorges Laboratory, Yichang 443007, China
| | - Jinggang Hu
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Xiangyi Deng
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Xuemei Liu
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Fang Zhou
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Junxia Yu
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Ruan Chi
- Key Laboratory of Novel Biomass-Based Environmental and Energy Materials in Petroleum and Chemical Industry, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China; Hubei Three Gorges Laboratory, Yichang 443007, China
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3
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Lu Y, Natarajan G, Nguyen TQN, Thi SS, Arumugam K, Seviour T, Williams RBH, Wuertz S, Law Y. Controlling anammox speciation and biofilm attachment strategy using N-biotransformation intermediates and organic carbon levels. Sci Rep 2022; 12:21720. [PMID: 36522527 PMCID: PMC9755228 DOI: 10.1038/s41598-022-26069-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 12/08/2022] [Indexed: 12/23/2022] Open
Abstract
Conventional nitrogen removal in wastewater treatment requires a high oxygen and energy input. Anaerobic ammonium oxidation (anammox), the single-step conversion of ammonium and nitrite to nitrogen gas, is a more energy and cost effective alternative applied extensively to sidestream wastewater treatment. It would also be a mainstream treatment option if species diversity and physiology were better understood. Anammox bacteria were enriched up to 80%, 90% and 50% relative abundance, from a single inoculum, under standard enrichment conditions with either stepwise-nitrite and ammonia concentration increases (R1), nitric oxide supplementation (R2), or complex organic carbon from mainstream wastewater (R3), respectively. Candidatus Brocadia caroliniensis predominated in all reactors, but a shift towards Ca. Brocadia sinica occurred at ammonium and nitrite concentrations > 270 mg NH4-N L-1 and 340 mg NO2-N L-1 respectively. With NO present, heterotrophic growth was inhibited, and Ca. Jettenia coexisted with Ca. B. caroliniensis before diminishing as nitrite increased to 160 mg NO2-N L-1. Organic carbon supplementation led to the emergence of heterotrophic communities that coevolved with Ca. B. caroliniensis. Ca. B. caroliniensis and Ca. Jettenia preferentially formed biofilms on surfaces, whereas Ca. Brocadia sinica formed granules in suspension. Our results indicate that multiple anammox bacteria species co-exist and occupy sub-niches in anammox reactors, and that the dominant population can be reversibly shifted by, for example, changing nitrogen load (i.e. high nitrite concentration favors Ca. Brocadia caroliniensis). Speciation has implications for wastewater process design, where the optimum cell immobilization strategy (i.e. carriers vs granules) depends on which species dominates.
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Affiliation(s)
- Yang Lu
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.1003.20000 0000 9320 7537Present Address: The Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD 4072 Australia
| | - Gayathri Natarajan
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
| | - Thi Quynh Ngoc Nguyen
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.185448.40000 0004 0637 0221Present Address: Agency for Science, Technology and Research, Singapore, 138632 Singapore
| | - Sara Swa Thi
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
| | - Krithika Arumugam
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
| | - Thomas Seviour
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.7048.b0000 0001 1956 2722Centre for Water Technology (WATEC) & Department of Biological and Chemical Engineering, Aarhus University, Universitetsbyen 36, 8000 Aarhus C, Denmark
| | - Rohan B. H. Williams
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, 119077 Singapore
| | - Stefan Wuertz
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore ,grid.59025.3b0000 0001 2224 0361School of Civil and Environmental Engineering, Nanyang Technological University, Singapore, 639798 Singapore
| | - Yingyu Law
- grid.484638.50000 0004 7703 9448Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551 Singapore
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4
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Xing CY, Li GY, Wang Q, Guo JS, Shen Y, Yan P, Fang F, Chen YP. Proteomics reveals the enhancing mechanism for eliminating toxic hydroxylamine from water by nanocompartments containing hydroxylamine oxidase. JOURNAL OF HAZARDOUS MATERIALS 2022; 440:129787. [PMID: 36007364 DOI: 10.1016/j.jhazmat.2022.129787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 07/27/2022] [Accepted: 08/13/2022] [Indexed: 06/15/2023]
Abstract
Hydroxylamine (NH2OH) is a potentially toxic pollutant when it is present in water, as it can damage both bacteria and the human body. It is still difficult to eliminate the toxic NH2OH in water. Here, we showed that the model bacterium (Escherichia coli) with nanocompartments encapsulated with hydroxylamine oxidase (HAO) can remove NH2OH from water. In addition, the removal efficiency of NH2OH by genetically modified bacteria (with HAO-nanocompartments) was 3.87 mg N L-1 h-1, and that of wild-type bacteria (without HAO-nanocompartments) was only 1.86 mg N L-1 h-1. Label-free quantitative proteomics indicated that the nanocompartments containing HAO enhanced bacterial activity by inducing the up-regulation of proteins involved in stress and stimulus responses, and decreased their intracellular NH2OH concentration. Moreover, the synthesis of proteins involved in energy metabolism, gene expression, and other processes in bacterial was enhanced under hydroxylamine stress, and these changes increased the resistance of bacterial to NH2OH. This work can aid our understanding of the toxic effects of NH2OH on bacteria as well as the development of new approaches to eliminate NH2OH in water.
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Affiliation(s)
- Chong-Yang Xing
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China; Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligence Technology, Chinese Academy of Sciences, Chongqing 400714, China; Chongqing School, University of Chinese Academy of Sciences, Chongqing 400714, China
| | - Guang-Yi Li
- Shanghai Advanced Research Institute Chinese of Sciences, Shanghai 201210, China
| | - Que Wang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - Jin-Song Guo
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - Yu Shen
- National Base of International Science and Technology Cooperation for Intelligent Manufacturing Service, Chongqing Technology and Business University, Chongqing 400067, China
| | - Peng Yan
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - Fang Fang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - You-Peng Chen
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China.
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5
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Huang T, Zhao J, Hu B, Zhao J, Yuan C. Effective restoration of partial nitritation and anammox biofilm process by short-term hydroxylamine dosing: Mechanism and microbial interaction. BIORESOURCE TECHNOLOGY 2021; 341:125910. [PMID: 34523549 DOI: 10.1016/j.biortech.2021.125910] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2021] [Revised: 08/28/2021] [Accepted: 09/03/2021] [Indexed: 06/13/2023]
Abstract
The one-stage partial nitritation and anammox (PN-A) process frequently experiences deterioration from ammonium accumulation and nitrate build-up. In this study, hydroxylamine was dosed to restore the process from deterioration in a continuously aerated PN-A sequencing biofilm batch reactor, and the impact of hydroxylamine on the metabolism of PN-A process was studied. PN-A process was totally restored in 5 days via 10 mg N·L-1 hydroxylamine dosing, reducing nitrate-produced/ammonium-removed ratio from 28.5% to less than 11.0%. hydroxylamine dosing promoted biological production of nitric oxide and nitrous oxide and reduced the production of nitrate in the PN-A process. This study advanced the understanding of the metabolism versatility of hydroxylamine and nitric oxide as well as their function in interaction between aerobic ammonium oxidation bacteria and anaerobic ammonium oxidation bacteria, and proposed the potential application of hydroxylamine dosing in ammonium-contained wastewater treatment.
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Affiliation(s)
- Ting Huang
- School of Civil Engineering, Chang'an University, Xi'an 710064, Shaanxi, China
| | - Jianqiang Zhao
- School of water and environment, Chang'an University, Xi'an 710064, Shaanxi, China; Key Laboratory of Subsurface Hydrology and Ecological Effect in Arid Region of Ministry of Education, Xi'an 710064, Shaanxi, China.
| | - Bo Hu
- School of Civil Engineering, Chang'an University, Xi'an 710064, Shaanxi, China
| | - Junkai Zhao
- School of water and environment, Chang'an University, Xi'an 710064, Shaanxi, China
| | - Chunbo Yuan
- School of Civil Engineering, Chang'an University, Xi'an 710064, Shaanxi, China
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6
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Feng F, Tang X, Qu C, Lu X, Liu Z, Tang J, Tang CJ, Chai L. Hydroxylamine addition enhances fast recovery of anammox activity suffering Cr(VI) inhibition. BIORESOURCE TECHNOLOGY 2021; 329:124920. [PMID: 33677423 DOI: 10.1016/j.biortech.2021.124920] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 02/23/2021] [Accepted: 02/24/2021] [Indexed: 06/12/2023]
Abstract
Hydroxylamine (NH2OH), one of the most important intermediates of anammox was employed to test the recovery performance because of its stimulation to anammox bacteria. Batch test indicated simultaneous addition of 1.83 ~ 9.17 mg N /L NH2OH relieved Cr(VI) inhibition because of extracellular reduction to Cr(III). The recovery efficiency (RE) was over 166%, with the effluent Cr(VI) and Cr(III) below 0.25 and 0.12 mg/L, respectively. Anammox activity after Cr(VI) inhibition was effectively recovered by 8 mg N/L NH2OH with RE at 218%. The long-term operation showed 1 ~ 2 mg N/L NH2OH accelerated the recover speed of nitrogen removal rate with 2.84 folds, as well as improving NH4+ conversion ratio and reducing NO3- production. After 55 days recovery, extracellular polymeric substance concentration, anammox activity and heme content recovered better with NH2OH addition. This study will provide the theoretical basis for rapid recovery of anammox activity by NH2OH when suffering Cr(VI) inhibition.
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Affiliation(s)
- Fan Feng
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China
| | - Xi Tang
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China
| | - Caiyan Qu
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China
| | - Xuan Lu
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China
| | - Zhigong Liu
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China
| | - Jia Tang
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China
| | - Chong-Jian Tang
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China.
| | - Liyuan Chai
- Department of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China; National Engineering Research Centre for Control and Treatment of Heavy Metal Pollution, Changsha 410083, China
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7
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Xing CY, Fan YC, Chen X, Guo JS, Shen Y, Yan P, Fang F, Chen YP. A self-assembled nanocompartment in anammox bacteria for resisting intracelluar hydroxylamine stress. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 717:137030. [PMID: 32062250 DOI: 10.1016/j.scitotenv.2020.137030] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 01/29/2020] [Accepted: 01/29/2020] [Indexed: 06/10/2023]
Abstract
Anammox bacteria play an important role in the global nitrogen cycle, but research on anammoxosome structure is still in its initial stages. In particular, the anammox bacteria genome contains nanocompartments gene loci. However, the function and structure of the nanocompartments in anammox bacteria is poorly understood. We apply genetic engineering to demonstrate the self-assembled nanocompartments of anammox bacteria. The encapsulin shell protein (cEnc) and cargo protein hydroxylamine oxidoreductase (HAO) can self-assemble to form regular nanocompartments (about 128 nm in diameter) in vitro. Cell growth curve tests show that nanocompartments help model bacteria resist hydroxylamine (NH2OH) stress. Batch test results and transcriptional data show that cEnc and HAO are highly expressed in response to the negative effects of NH2OH on anammox efficiency, predicting a potential role of nanocompartments in helping anammox bacteria resist NH2OH stress. These findings improve our understanding of the mechanisms by which anammox bacteria respond to harmful environmental metabolites.
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Affiliation(s)
- Chong-Yang Xing
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligence Technology, Chinese Academy of Sciences, Chongqing 400714, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu-Chen Fan
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - Xuan Chen
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - Jin-Song Guo
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - Yu Shen
- National Base of International Science and Technology Cooperation for Intelligent Manufacturing Service, Chongqing Technology and Business University, Chongqing 400067, China
| | - Peng Yan
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - Fang Fang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China
| | - You-Peng Chen
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligence Technology, Chinese Academy of Sciences, Chongqing 400714, China; University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments of MOE, Chongqing University, Chongqing 400045, China.
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8
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Liu Y, Yuan X, Liu Z. Optimization, purification, and characterization of hydroxylamine oxidoreductase from Acinetobacter sp. Y1. Biotechnol Appl Biochem 2019; 66:494-501. [PMID: 30905079 DOI: 10.1002/bab.1745] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Accepted: 03/11/2019] [Indexed: 01/14/2023]
Abstract
Hydroxylamine oxidoreductase (HAO) is a key enzyme involved in ammonium removal pathway. To further study the enzyme, HAO was purified from heterotrophic nitrifier Acinetobacter sp. Y1 and its property was investigated. Results of single-factor experiments showed that the optimal carbon source, nitrogen source, and C/N ratio were trisodium citrate, ammonium sulfate, and 14, respectively, with incubation time of 16 H. DEAE SefinoseTM FF anion-exchange chromatography was used to purify HAO, followed by SefinoseTM CL-6B gel filtration chromatography. SDS-PAGE revealed that a 47 kDa enzyme was purified successfully, with a purification fold of 7.32 and a recovery rate of 19.40%. The optimized enzyme activity of purified HAO was tested at pH 8.0 and 30 °C. The results showed that the activity was increased by 43.78% and 25.64% in the presence of 1 mM Fe2+ and Fe3+ , respectively. HAO activity was increased with the increase of Na+ and K+ , Mn2+ , Zn2+ , Cu2+ , Ca2+ , Ba2+ inhibited the HAO activity at three concentrations. In addition, HAO activity was activated by ethylenediaminetetraacetic acid at 0.4 mM, and a negative effect arose as the dose increased. The purified enzyme from Y1 is different from other reported HAOs. Further study should be conducted to investigate the enzyme.
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Affiliation(s)
- Yuxiang Liu
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, Shanxi, People's Republic of China
| | - Xin Yuan
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, Shanxi, People's Republic of China
| | - Zeying Liu
- Key Laboratory of Coal Science and Technology of Shanxi Province and Ministry of Education, Taiyuan University of Technology, Taiyuan, Shanxi, People's Republic of China
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9
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Park H, Brotto AC, van Loosdrecht MCM, Chandran K. Discovery and metagenomic analysis of an anammox bacterial enrichment related to Candidatus "Brocadia caroliniensis" in a full-scale glycerol-fed nitritation-denitritation separate centrate treatment process. WATER RESEARCH 2017; 111:265-273. [PMID: 28088723 DOI: 10.1016/j.watres.2017.01.011] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2016] [Revised: 01/03/2017] [Accepted: 01/04/2017] [Indexed: 06/06/2023]
Abstract
A distinctive red biofilm was observed in a glycerol-fed digester liquid effluent treatment process coupling partial nitrification (nitritation) and partial denitrification (denitritation) processes. Based on initial phylogenetic screening using 16S rRNA clone libraries and quantitative polymerase chain reaction, the biofilm was enriched in novel anaerobic ammonium oxidizing bacteria (AMX/anammox) closely related to Candidatus "Brocadia caroliniensis". The metabolic functionality of the C. "Brocadia caroliniensis" enrichment was further explored using high-throughput sequencing and de novo metagenome assembly. The population anammox genome that was binned from the metagenome consisted of 209 contigs with a total of 3.73 Mbp consensus sequences having 43.3% GC content, and 27.4 average coverage depth. The assembled metagenome bin was comprised of 3582 open reading frames (ORFs). Based on 16S rRNA similarity the binned metagenome was closely related with Candidatus "Brocadia caroliniensis", Candidatus "Brocadia fulgida", planctomycete KSU-1, and Candidatus "Kuenenia stuttgartiensis" with 99%, 96%, 92% and 93% similarity, respectively. Essential genes in anammox metabolic functions including ammonium and nitrite transport, hydrazine synthesis, electron transfer for catabolism, and inorganic carbon fixation, among several other anabolic pathways, were also observed in the population genome of the C. "Brocadia caroliniensis" related enrichment. Our results demonstrate the wider profusion of anammox bacteria in engineered nitrogen removal systems than expected. The utility of metagenomics approaches to deciphering such novel functionality in these systems is also highlighted.
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Affiliation(s)
- Hongkeun Park
- Department of Earth and Environmental Engineering, Columbia University, New York, NY 10027, USA
| | - Ariane C Brotto
- Department of Earth and Environmental Engineering, Columbia University, New York, NY 10027, USA
| | - Mark C M van Loosdrecht
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628BC Delft, The Netherlands
| | - Kartik Chandran
- Department of Earth and Environmental Engineering, Columbia University, New York, NY 10027, USA.
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10
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Yu C, Song YX, Chai LY, Duan CS, Tang CJ, Ali M, Peng C. Comparative evaluation of short-term stress of Cd(II), Hg(II), Pb(II), As(III) and Cr(VI) on anammox granules by batch test. J Biosci Bioeng 2016; 122:722-729. [DOI: 10.1016/j.jbiosc.2016.06.008] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Revised: 06/12/2016] [Accepted: 06/14/2016] [Indexed: 11/29/2022]
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11
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Chen J, Gu S, Hao H, Chen J. Characteristics and metabolic pathway of Alcaligenes sp. TB for simultaneous heterotrophic nitrification-aerobic denitrification. Appl Microbiol Biotechnol 2016; 100:9787-9794. [PMID: 27678119 DOI: 10.1007/s00253-016-7840-x] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Revised: 08/20/2016] [Accepted: 09/01/2016] [Indexed: 10/20/2022]
Abstract
A novel heterotrophic nitrification-aerobic denitrification bacterium, Alcaligenes sp. TB (GenBank accession no. JQ044686), was isolated from a rotating drum biofilter for NO removal. Its characteristics and metabolic pathway for NO removal were comprehensively investigated. Experimental results showed that the nitrification and denitrification efficiency reached 99.42 and 96.44 %, respectively, after 44 h under the conditions of pH 7.2, 30 °C, and 120 rpm. The tests with the addition of Pb2+ and Na2WO4 as the reductase inhibitor revealed that nitrite was the key intermediate to produce the nitrogen gas as the final product in the simultaneous heterotrophic nitrification and denitrification by strain TB. Based on the experimental results, the metabolic pathway of strain TB has been proposed that it carries out shortcut/complete simultaneous nitrification and denitrification with nitrite as an intermediate and nitrogen gas as a final product. The two potential metabolic pathways existing in strain TB can be described as NH4+ → NH2OH → NO2- → N2O → N2 and NH4+ → NH2OH → NO2- → NO3- → NO2- → N2O → N2. This work indicates that the strain TB may be a good candidate for the denitrification of the sewage.
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Affiliation(s)
- Jun Chen
- Engineering Research Center of the Ministry of Education for Bioconversion and Biopurification, Zhejiang University of Technology, Hangzhou, 310032, People's Republic of China
| | - Siyang Gu
- College of Environment, Zhejiang University of Technology, Hangzhou, 310032, People's Republic of China
| | - Honghong Hao
- College of Environment, Zhejiang University of Technology, Hangzhou, 310032, People's Republic of China
| | - Jianmeng Chen
- Engineering Research Center of the Ministry of Education for Bioconversion and Biopurification, Zhejiang University of Technology, Hangzhou, 310032, People's Republic of China.
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Parey K, Fielding AJ, Sörgel M, Rachel R, Huber H, Ziegler C, Rajendran C. In meso
crystal structure of a novel membrane-associated octaheme cytochrome c
from the Crenarchaeon Ignicoccus hospitalis. FEBS J 2016; 283:3807-3820. [DOI: 10.1111/febs.13870] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2016] [Revised: 08/17/2016] [Accepted: 08/31/2016] [Indexed: 11/29/2022]
Affiliation(s)
- Kristian Parey
- Department of Structural Biology; Max Planck Institute of Biophysics; Frankfurt am Main Germany
| | - Alistair J. Fielding
- School of Chemistry and the Photon Science Institute; University of Manchester; UK
| | - Matthias Sörgel
- Biogeochemistry Department; Max Planck Institute for Chemistry; Mainz Germany
| | - Reinhard Rachel
- Department of Microbiology; University of Regensburg; Germany
| | - Harald Huber
- Department of Microbiology; University of Regensburg; Germany
| | | | - Chitra Rajendran
- Department of Structural Biology; University of Regensburg; Germany
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13
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Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer. ISME JOURNAL 2016; 10:2106-17. [PMID: 26943628 PMCID: PMC4989316 DOI: 10.1038/ismej.2016.25] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2015] [Revised: 01/06/2016] [Accepted: 01/10/2016] [Indexed: 11/29/2022]
Abstract
Groundwater ecosystems are conventionally thought to be fueled by surface-derived allochthonous organic matter and dominated by heterotrophic microbes living under often-oligotrophic conditions. However, in a 2-month study of nitrate amendment to a perennially suboxic aquifer in Rifle (CO), strain-resolved metatranscriptomic analysis revealed pervasive and diverse chemolithoautotrophic bacterial activity relevant to C, S, N and Fe cycling. Before nitrate injection, anaerobic ammonia-oxidizing (anammox) bacteria accounted for 16% of overall microbial community gene expression, whereas during the nitrate injection, two other groups of chemolithoautotrophic bacteria collectively accounted for 80% of the metatranscriptome: (1) members of the Fe(II)-oxidizing Gallionellaceae family and (2) strains of the S-oxidizing species, Sulfurimonas denitrificans. Notably, the proportion of the metatranscriptome accounted for by these three groups was considerably greater than the proportion of the metagenome coverage that they represented. Transcriptional analysis revealed some unexpected metabolic couplings, in particular, putative nitrate-dependent Fe(II) and S oxidation among nominally microaerophilic Gallionellaceae strains, including expression of periplasmic (NapAB) and membrane-bound (NarGHI) nitrate reductases. The three most active groups of chemolithoautotrophic bacteria in this study had overlapping metabolisms that allowed them to occupy different yet related metabolic niches throughout the study. Overall, these results highlight the important role that chemolithoautotrophy can have in aquifer biogeochemical cycling, a finding that has broad implications for understanding terrestrial carbon cycling and is supported by recent studies of geochemically diverse aquifers.
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Zekker I, Rikmann E, Tenno T, Loorits L, Kroon K, Fritze H, Tuomivirta T, Vabamäe P, Raudkivi M, Mandel A, Dc Rubin SSC, Tenno T. Nitric oxide for anammox recovery in a nitrite-inhibited deammonification system. ENVIRONMENTAL TECHNOLOGY 2015; 36:2477-2487. [PMID: 25827614 DOI: 10.1080/09593330.2015.1034791] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The anaerobic ammonium oxidation (anammox) process is widely used for N-rich wastewater treatment. In the current research the deammonification reactor in a reverse order (first anammox, then the nitrifying biofilm cultivation) was started up with a high maximum N removal rate (1.4 g N m(-2) d(-1)) in a moving bed biofilm reactor. Cultivated biofilm total nitrogen removal rates were accelerated the most by anammox intermediate - nitric oxide (optimum 58 mg NO-N L(-1)) addition. Furthermore, NO was added in order to eliminate inhibition caused by nitrite concentrations (>50 mg [Formula: see text]) increasing [Formula: see text] (2/1, respectively) along with a higher ratio of [Formula: see text] (0.6/1, respectively) than stoichiometrical for this optimal NO amount added during batch tests. Planctomycetales clone P4 sequences, which was the closest (98% and 99% similarity, respectively) relative to Candidatus Brocadia fulgida sequences quantities increase to 1 × 10(6) anammox gene copies g(-1) total suspended solids to till day 650 were determined by quantitative polymerase chain reaction.
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Affiliation(s)
- Ivar Zekker
- a Institute of Chemistry, University of Tartu , 14a Ravila St., 50411 Tartu , Estonia
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