Variation of the microbial community in thermophilic anaerobic digestion of pig manure mixed with different ratios of rice straw

Influence of organic loading rate and temperature fluctuation caused by solar energy heating on food waste anaerobic digestion

Anaerobic digestion, one of the most currently remarkable techniques for biogas production, has provided a method of high organic solid waste disposal. Operating temperature, especially in the winter of northern city, makes biomass degradation less efficient. The microorganisms that take on the role of gas production are greatly affected by temperature. In our study, solar energy was selected for anaerobic digestion and winter was selected as the experimental environment. Anaerobic digestion was performed with solar heating and electric heating separately. Parameters were tested (pH, soluble chemical oxygen demand, total ammonia nitrogen, total volatile fatty acids), and microbial structure was monitored. The volume of methane produced was measured over 60 days. The methane yield differed by 15.92% under different conditions. It is clearly shown that methane yield can be improved by a steady temperature environment. Nevertheless, dominant bacteria and microbial structure did not seem to be much different. This study may provide more energy-saving ideas for winter anaerobic digestion projects in northern regions.

Co-Fermentation of Microalgae Biomass and Miscanthus × giganteus Silage—Assessment of the Substrate, Biogas Production and Digestate Characteristics

The development of a sustainable bioenergy market is currently largely fueled by energy crops, whose ever-increasing production competes with the global food and feed supply. Consequently, non-food crops need to be considered as alternatives for energy biomass production. Such alternatives include microalgal biomass, as well as energy crops grown on non-agricultural land. The aim of the present study was to evaluate how co-digestion of microalgal biomass with giant miscanthus silage affects feedstock properties, the biogas production process, biogas yields, methane fractions and the digestate profile. Combining giant miscanthus silage with microbial biomass was found to produce better C/N ratios than using either substrate alone. The highest biogas and methane production rates—628.00 ± 20.05 cm3/gVS and 3045.56 ± 274.06 cm3 CH4/d—were obtained with 40% microalgae in the feedstock. In all variants, the bulk of the microbial community consisted of bacteria (EUB338) and archaea (ARC915).

Effect of lignin on short-chain fatty acids production from anaerobic fermentation of waste activated sludge

Lignin, a biological resource with great potential, can be as high as ∼16% of the total organics in the waste activated sludge (WAS). This work therefore aims to fill the knowledge gap about the effect of lignin on short-chain fatty acids (SCFAs) production from anaerobic fermentation of sludge. Experimental results showed that lignin promoted rather than inhibited SCFAs production. Specifically, the presence of 15% lignin promoted the SCFAs production from 129.1 ± 6.5 to 223.14 ± 7.8 mg COD/g VSS compared with the control, and the proportion of acetic increased by 61.8%, while that of propionic decreased by 44.9%. Mechanism exploration revealed that lignin improved the solubilization of biodegradable substrates due to its hydrophobic characteristics. In addition, lignin enhanced the acidogenesis process, possibly by perfecting the electron transfer chain in the fermentation system, and the quinone structure in lignin may compete electrons with methanogens to inhibit the consumption of SCFAs. Microbiological analysis showed that the abundance of microorganisms related to acidogenesi, especially the acetogenesis, including Proteiniclasticum sp., Acetoanaerobium sp., in the fermenter with lignin increased, which caused the community to shift towards specialized and diverse SCFAs production.

Improving two-stage thermophilic-mesophilic anaerobic co-digestion of swine manure and rice straw by digestate recirculation

The anaerobic co-digestion (coAD) of swine manure (SM) and rice straw (RS) is appealing for renewable energy recovery and waste treatment worldwidely. Improving its performance is very important for its application. In this study, long-term semi-continuous experiments were conducted to evaluate the improving effects of digestate recirculation on the performance, energy recovery, and microbial community of two-stage thermophilic-mesophilic coAD of swine manure (SM) and rice straw (RS). The experimental results indicated that the coAD systems of SM and RS (mixing ratio of 3:1) with or without digestate recirculation could not realize phase separation. The reactors of both coAD systems were characterized by pH values ranging from 7.74 to 7.85, methane production as 0.41 ± 0.02 and 0.44 ± 0.03 L/L/d, and stable operation. Notably, digestate recirculation increased total methane production, organic matter removal, and reaction rate of the coAD system by 9.92 ± 5.08, 5.22 ± 1.94, and 9.73-12.60%, respectively. Digestate recirculation improved the performance of the coAD by significantly increasing the abundance of Methanosarcina (from 4.1% to 7.5%-10.7% and 35.7%) and decreasing that of Methanothermobacter (from 94.2% to 87.3%-83.6% and 56.8%). Thus, the main methanogenesis pathway of the coAD system was changed by digestate recirculation and the methane production was effectively improved. Although the energy input of the coAD system increased by 30.26%, digestate recirculation improved the energy balance of the total system by 6.83%.

Effect of feeding practices and manure quality on CH4 and N2O emissions from uncovered cattle manure heaps in Kenya

Countries in sub-Saharan Africa (SSA) rely on IPCC emission factors (EF) for GHG emission reporting. However, these were derived for industrialized livestock farms and do not represent conditions of smallholder farms (small, low-producing livestock breeds, poor feed quality, feed scarcity). Here, we present the first measurements of CH₄ and N₂O emissions from cattle-manure heaps representing feeding practices typical for smallholder farms in the highlands of East Africa: 1) cattle fed below maintenance energy requirements to represent feed scarcity, and 2) cattle fed tropical forage grasses (Napier, Rhodes, Brachiaria). Sub-maintenance feeding reduced cumulative manure N₂O emissions compared to cattle receiving sufficient feed but did not change EF_N2O. Sub-maintenance feeding did not affect cumulative manure CH₄ emissions or EF_CH4. When cattle were fed tropical forage grasses, cumulative manure N₂O emissions did not differ between diets, but manure EF_N2O from Brachiaria and Rhodes diets were lower than the IPCC EF_N2O for solid storage (1%, 2019 Refinement of IPCC Guidelines). Manure CH₄ emissions were lower in the Rhodes grass diet than when feeding Napier or Brachiaria, and manure EF_CH4 from all three grasses were lower than the IPCC default (4.4 gCH₄kg^-1 VS, 2019 Refinement of IPCC Guidelines). Regression analysis revealed that manure N concentration and C:N were important drivers of N₂O emissions, with low N concentrations and high C:N reducing N₂O emissions. Our results show that IPCC EFs overestimate excreta GHG emissions, which calls for additional measurements to develop localized EFs for smallholder livestock systems in SSA.

Effects of organic loading rate and temperature fluctuation on the microbial community and performance of anaerobic digestion of food waste

Semi-continuous anaerobic fermentation of food waste was carried out using a solar-assisted heat reactor to explore effects of temperature fluctuation and organic loading rate (OLR: 2.0, 4.0, 6.0, 7.0 kg/(m³ day)VS on the reactor performance and microbial community structure. The results showed that the best methane production was achieved when OLR was 6.0 kg/(m³ day)VS because the reactors did not operate stably at 7.0 kg/(m³ day)VS. Compared with fluctuation of fermentation temperature, methane production at stable fermentation temperature increased by 21.72%, but higher power consumption occured. The results of high-throughput sequencing showed that OLR played a decisive role in succession of microbial community structure, while temperature fluctuation was more likely to affect microbial activity. When OLR was lower than 4.0 kg/(m³ day)VS, aceticlastic methanogens Methanosaeta were the dominant bacteria, while at 6.0 kg/(m³ day)VS, relative abundance of hydrogenotrophic methanogens Methanoregula and Methanospirillum increased.

Eco-compatible biochar mitigates volatile fatty acids stress in high load thermophilic solid-state anaerobic reactors treating agricultural waste

A high concentration of accumulated volatile fatty acids (VFAs) is one of the most important factors resulting in reactor failure during solid-state anaerobic digestion. In this study, the feedstock-to-inoculum (F/I) ratio (0.5, 2, 3, 4 and 6) and the recovery method after failure (biochar addition or inoculum addition) were investigated in batch solid-state anaerobic digestion fed with rice straw and pig urine. An F/I ratio of 3 was the threshold for stable operation, while the reactors failed at F/I ratios of 4 and 6 because of high accumulated VFAs concentrations (above 30 g HAc/kg). Biochar addition (10% or 20% (wet weight) of the mixture) was as effective as inoculum addition (by adjusting the F/I ratio to 2 or 3) in promoting VFAs degradation in failed reactors within a short period (<1 day). The buffering capacity of biochar was important in promoting VFAs degradation.

Responses of microbial communities to a gradient of pig manure amendment in red paddy soils

Microbial communities play a key role in maintaining agroecosystem functioning and sustainability, but their response to excessive animal manure application and relevant mechanisms have not been thoroughly elucidated to date. This study investigated the responses of soil bacterial and fungal communities to pig manure (PM) amendment in red paddy soils. High-throughput sequencing revealed that PM amendment significantly reduced the relative abundance of Acidobacteria yet increased that of Bacteroidetes, Ignavibacteriae, Firmicutes, and Rozellomycota. The Cu and available phosphorus were the primary impact factors influencing bacterial and fungal diversity, respectively. Bacterial alpha-diversity tended to sharply decrease when the content of soil Cu was >30.70 mg kg^-1, while fungal alpha-diversity did not continuously increase when the content of soil available phosphorus was >82.84 mg kg^-1. Bacterial communities with a wider niche breadth showed significantly lower structural variation, whereas fungal communities with a narrower niche breadth showed greater variation in community structure. Soil heavy metals, primarily Cu and Zn, were the primary factors that affected bacterial communities, whereas soil fungal communities were mainly influenced by soil phosphorus. Bacterial and fungal communities showed distinct co-occurrence patterns, with bacterial communities showing a higher degree, a clustering coefficient, and betweenness centrality, but a lower closeness centrality. The findings highlighted that bacteria and fungi responded differently to PM amendment because of their discrepant niche breadth, interspecific relationships, and different tolerance to heavy metal and soil nutrient.

Microbial Community Analysis of Digested Liquids Exhibiting Different Methane Production Potential in Methane Fermentation of Swine Feces

Batch methane fermentation was conducted using seed sludge collected from six methane fermentation facilities. Swine feces were centrifuged and autoclaved, followed by its use as a substrate for methanogenesis. This "swine feces supernatant medium" facilitates the cultivation of the microbes of the seed sludge, sampling of the digested liquid using a syringe, and subculturing of the digested liquid in a subsequent medium using a syringe. Through 15 subcultures, digested liquids with high and low methane production potential were obtained, which were named "H-DS" and "L-DS," respectively. On the day 10 of cultivation, chemical oxygen demand (COD) of H-DS significantly decreased by 31% and that of L-DS did not differ significantly compared with that on the day 0 of cultivation. Acetic acid concentration of H-DS (1009 mg/L) was significantly lower than that of L-DS (2686 mg/L). These chemical characteristics indicate that organics decomposition in L-DS was not successful and suggest that H-DS has high relative abundance of bacteria decomposing organic matter and methanogen utilizing acetic acid compared with those in L-DS. Microbial community analysis revealed that Shannon index of H-DS was significantly higher than that of L-DS, and the relative abundance of acetogenic bacteria (e.g., Syntrophomonas) and acetic acid-utilizing methanogen (Methanosarcina) in H-DS was significantly higher than that in L-DS. Thus, the high methane production potential of H-DS might be attributable to the smooth flow from acetogenesis to methanogenesis step in the methane fermentation, compared with the case of L-DS.

Microbial Profile of the Leachate from Mexico City’s Bordo Poniente Composting Plant: An Inoculum to Digest Organic Waste

In recent years, municipal solid waste (MSW) management has become a complex problem worldwide. Similarly, Mexico City is facing such a situation for the management and treatment of organic fraction of municipal solid waste (OFMSW). Therefore, in this work, we investigated whether leachate from the composting plant, Bordo Poniente, located in Mexico City can be used as an inoculum for the treatment of OFMSW using thermophilic anaerobic digestion (AD) with a hydraulic retention time of 30 days. We analyzed the physicochemical properties of the leachate and performed a biochemical methane potential test. Archaeal and bacterial diversity was also identified using high throughput DNA sequencing of 16S rDNA libraries. Methane yield was 0.29 m3 CH4/kg VSadded in the positive control and 0.16 m3 CH4/kg VSadded in the treatment group. The phylum, Bacteroidetes, and genus, Methanosarcina, prevailed in the leachate. However, in thermophilic conditions, the microbial communities changed, and the phylum, Firmicutes, genera, Methanoculleus, and candidate genus, vadinCA11, were dominant in the treatment group. We concluded that the leachate contains a suitable initial charge of many active bacteria and methanogenic archaea which contribute to the AD process, hence it can be used as an inoculum for the treatment of OFMSW.

Meta-omics based analyses of microbiome involved in biomethanation of rice straw in a thermophilic anaerobic bioreactor under optimized conditions

Biomethanation of rice straw was performed at 55 °C without thermochemical pretreatment using cattle dung supplemented with Methanothermobacter thermautotrophicus strains. Methane yield of 323 ml g^-1 VS obtained under optimized conditions such as particle size (1 mm), carbon to nitrogen ratio (15:1), substrate to inoculum ratio (1:1), organic loading rate (7.5% w/v) and hydraulic retention time (20 days), was one of the highest ever reported from rice straw. Metagenome analysis revealed several putative novel taxa among resident microbes. The genomes of Clostridium, Hungateiclostridium, Alkaliphilus, Anaerocolumna, Olsenella, Paenibacillus, Pseudoclostridium, Tepidanaerobacter and Turicibacter were recovered as metagenome assisted genomes. Clostridium spp. and M. thermautotrophicus were the dominant hydrolytic and methanogenic microbes, respectively. Syntrophic acetate oxidation coupled to hydrogenotrophic methanogenesis was found to be the major pathway for methane production. Efficient thermophilic biomethanation of rice straw without thermochemical pretreatment using cattle dung supplemented with M. thermautotrophicus is reported for the first time.

Novel insight into high solid anaerobic digestion of swine manure after thermal treatment: Kinetics and microbial community properties

Compared to traditional anaerobic digestion (AD), high solid anaerobic digestion (HSAD) had the advantages of small digester, low heating energy and less digestate. However, the methane production was poor. In our previous study, thermal treatment (70 ± 1 °C, 3 days) without any dilution could satisfactorily enhance the methane production rate of HSAD by up to 39.5%. However, effects of solid content on HSAD after thermal treatment were not yet studied. In this study, HSAD was conducted at 11.7-17.6% solid content, and the control experiment was conducted at low solid content (4.4% solid content). Results showed that HSAD's methane production rate was the highest at 11.7% solid content (158 mL CH₄/g VS), and could reach up to 89.2% of that at 4.4% solid content. The utilization of organics was revealed by kinetics analysis that the readily biodegradable organics could be utilized at increasing solid content with decreasing hydrolysis rate. Furthermore, it was notable that methylotrophic methanogens predominated in HSAD with the abundance of 82.6%. This was quite unique from the general belief that AD system was usually dominated by acetoclastic or hydrogenotrophic methanogenic pathways. In this study, the microbial community structure of HSAD after thermal treatment was firstly studied, its unique specific methanogenic pathways was firstly revealed.

Higher Temperatures Do Not Always Achieve Better Antibiotic Resistance Gene Removal in Anaerobic Digestion of Swine Manure

This study employed high-throughput quantitative PCR and 16S rRNA sequencing to evaluate the effect of temperature and residual antibiotics on the dynamics of antibiotic resistance genes (ARGs) and microbial communities during anaerobic digestion of swine manure. The abundances of total ARGs and 16S rRNA genes significantly decreased in all of four treatments (25°C, 37°C, and 37°C with 50 mg of wet weight antibiotics of body weight, and 55°C). The abundances of most ARG types were significantly correlated with those of the 16S rRNA gene and transposase gene (P < 0.01). However, the abundances of total ARGs at 55°C were much higher than those of other treatments. Meanwhile, the microbial communities at 55°C, where the Streptococcus pathogen remained at a relatively high abundance and cellulose degraders and hydrogen producers, such as Ethanoligenens and Coprococcus bacteria, increased, were markedly different from those of other treatments. Redundancy analysis indicates that temperature, pH, and the genus Streptococcus had the highest explanation for ARG variation among experimental factors, chemical properties, and representative genera, respectively. Network analysis further showed that the genus Streptococcus contributed greatly to the higher ARG abundance at 55°C. The moderate antibiotic residue only caused a slight and transitory inhibition for microbially diverse populations and promotion for ARG abundance, probably due to the degradation of antibiotics and microbial adaptability. Our results clarify the cooperativity of gene transfer-related items on ARG variation and intensively prove that higher temperature cannot always achieve better ARG removal in anaerobic digestion unless pathogens and gene transfer elements are more efficiently inhibited.IMPORTANCE Antibiotic resistance genes (ARGs) are frequently detected with high abundance in manure-applied soils. Anaerobic digestion is one of widely used processes for animal waste treatment. Thus, it is critical to understand the potential of anaerobic digestion to attenuate ARGs. Although some previous studies recommended thermophilic digestion for ARG removal, they did not get sufficient evidence to support this view. The antibiotics applied to animals are mostly excreted through feces and urine because of incomplete metabolism. It is indispensable to know whether residual antibiotics in manure will hinder ARG attenuation in anaerobic digesters. The significance of our research is in comprehensively understanding the evolution and mechanism of ARGs in anaerobic digestion of swine manure affected by temperature and residual antibiotics, which will allow the development of an ARG elimination strategy before their release into the environment.

Impact of turning waste on performance and energy balance in thermophilic solid-state anaerobic digestion of agricultural waste

Mixing is an important operation in solid-state anaerobic digestion (SS-AD) to improve the mass transfer of the solid phase. This study proposed simple turning by loader in common garage-type digester without commonly used mixer or percolation system (simplified SS-AD). In simplified-SS-AD, turning is conducted in open condition. Thus, oxidation of anaerobic sludge during turning would influence digestion performance. Therefore, in this study, the effect of turning wastes by mixing during digestion on a simplified SS-AD fed with rice straw and pig urine was investigated. Four different mixing frequency levels-no mixing (M0) and mixing once a day (M-1/1), once every 3 days (M-1/3) and once a week (M-1/7)-were conducted. Methane yields of M0, M-1/3 and M-1/7 were comparable with each other. Methane yield and lag period of M-1/1 were approximately 61% and 155% of M0 (351.2  mL/g VS and 4.7 days), respectively. Furthermore, the chemical oxygen demand (COD) of acetate accumulated in the digestate of M-1/1 was comparable to the difference in the COD of methane production between M-1/1 and the other treatments. Mixing every day also resulted in a higher oxidation-reduction potential and carbon dioxide content. These findings suggest that methanogenesis was inhibited in M-1/1 by frequent mixing in the atmosphere. Net energy analysis of SS-AD plant operation showed that M0 can obtain the highest net energy gain, whereas net energy production of M-1/7 was reduced by rewarming after mixing. Therefore, no mixing is the most effective approach for the proposed simplified process.

Influence of feedstock-to-inoculum ratio on performance and microbial community succession during solid-state thermophilic anaerobic co-digestion of pig urine and rice straw

This study investigated the effect of the feedstock-to-inoculum (F/I) ratio on performance of the solid-state anaerobic co-digestion of pig urine and rice straw inoculated with a solid digestate, and clarified the microbial community succession. A 44-day biochemical methane potential test at F/I ratios of 0.5, 1, 2 and 3 at 55 °C and a 35-day large-scale batch test at F/I ratios of 0.5 and 3 at 55 °C were conducted to investigate the effects of F/I ratio on anaerobic digestibility and analyze microbial community succession, respectively. The highest cumulative methane yield was 353.7 m³/t VS in the large-scale batch test. Volatile fatty acids did not accumulate at any F/I ratios. The volatile solids reduction rate was highest at a F/I ratio of 0.5. Microbial community structures were similar between F/I ratios of 3 and 0.5, despite differences in digestion performance, suggesting that stable operation can be achieved at these ratios.

A critical review on the interaction of substrate nutrient balance and microbial community structure and function in anaerobic co-digestion

Anaerobic co-digestion generally results in a higher yield of biogas than mono-digestion, hence co-digestion has become a topic of general interest in recent studies of anaerobic digestion. Compared with mono-digestion, co-digestion utilizes multiple substrates. The balance of substrate nutrient in co-digestion comprises better adjustments of C/N ratio, pH, moisture, trace elements, and dilution of toxic substances. All of these changes could result in positive shifts in microbial community structure and function in the digestion processes and consequent augmentation of biogas production. Nevertheless, there have been few reviews on the interaction of nutrient and microbial community in co-digestions. The objective of this review is to investigate recent achievements and perspectives on the interaction of substrate nutrient balance and microbial community structure and function. This may provide valuable information on the optimization of combinations of substrates and prediction of bioreactor performance.