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Jo SY, Lim SH, Lee JY, Son J, Choi JI, Park SJ. Microbial production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate), from lab to the shelf: A review. Int J Biol Macromol 2024; 274:133157. [PMID: 38901504 DOI: 10.1016/j.ijbiomac.2024.133157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 06/11/2024] [Accepted: 06/12/2024] [Indexed: 06/22/2024]
Abstract
Polyhydroxyalkanoates (PHAs) are natural biopolyesters produced by microorganisms that represent one of the most promising candidates for the replacement of conventional plastics due to their complete biodegradability and advantageous material properties which can be modulated by varying their monomer composition. Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [P(3HB-co-3HV)] has received particular research attention because it can be synthesized based on the same microbial platform developed for poly(3-hydroxybutyrate) [P(3HB)] without much modification, with as high productivity as P(3HB). It also offers more useful mechanical and thermal properties than P(3HB), which broaden its application as a biocompatible and biodegradable polyester. However, a significant commercial disadvantage of P(3HB-co-3HV) is its rather high production cost, thus many studies have investigated the economical synthesis of P(3HB-co-3HV) from structurally related and unrelated carbon sources in both wild-type and recombinant microbial strains. A large number of metabolic engineering strategies have also been proposed to tune the monomer composition of P(3HB-co-3HV) and thus its material properties. In this review, recent metabolic engineering strategies designed for enhanced production of P(3HB-co-3HV) are discussed, along with their current status, limitations, and future perspectives.
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Affiliation(s)
- Seo Young Jo
- Department of Chemical Engineering and Materials Science, Graduate Program in System Health Science and Engineering, Ewha Womans University, Seoul 03760, Republic of Korea
| | - Seo Hyun Lim
- Department of Chemical Engineering and Materials Science, Graduate Program in System Health Science and Engineering, Ewha Womans University, Seoul 03760, Republic of Korea
| | - Ji Yeon Lee
- Department of Chemical Engineering and Materials Science, Graduate Program in System Health Science and Engineering, Ewha Womans University, Seoul 03760, Republic of Korea
| | - Jina Son
- Department of Chemical Engineering and Materials Science, Graduate Program in System Health Science and Engineering, Ewha Womans University, Seoul 03760, Republic of Korea
| | - Jong-Il Choi
- Department of Biotechnology and Bioengineering, Chonnam National University, Gwangju 61186, Republic of Korea.
| | - Si Jae Park
- Department of Chemical Engineering and Materials Science, Graduate Program in System Health Science and Engineering, Ewha Womans University, Seoul 03760, Republic of Korea.
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Kim SM, Lee HI, Nam SW, Jin DH, Jeong GT, Nam SW, Burns B, Jeon YJ. The Halophilic Bacterium Paracoccus haeundaensis for the Production of Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) from Single Carbon Sources. J Microbiol Biotechnol 2024; 34:74-84. [PMID: 37997264 PMCID: PMC10840474 DOI: 10.4014/jmb.2305.05025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 10/29/2023] [Accepted: 10/31/2023] [Indexed: 11/25/2023]
Abstract
The study objective was to evaluate the potential production of polyhydroxyalkanoates (PHAs), a biodegradable plastic material, by Paracoccus haeundaensis for which PHA production has never been reported. To identify the most effective nitrogen-limited culture conditions for PHAs production from this bacterium, batch fermentation using glucose concentrations ranging from 4 g l-1 to 20 g l-1 with a fixed ammonium concentration of 0.5 g l-1 was carried out at 30°C and pH 8.0. A glucose supplement of 12 g l-1 produced the highest PHA concentration (1.6 g l-1) and PHA content (0.63 g g-1) thereby identifying the optimal condition for PHA production from this bacterium. Gas chromatography-mass spectrometry analysis suggests that P. haeundaensis mostly produced copolymer types of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [P(3HB-co-3HV)] from glucose concentrations at 12 g l-1 or higher under the nitrogen-limited conditions. When several other single carbon sources were evaluated for the most efficient PHA production, fructose provided the highest biomass (2.8 g l-1), and PHAs (1.29 g l-1) concentrations. Results indicated that this bacterium mostly produced the copolymers P(3HB-co-3HV) from single carbon sources composing a range of 93-98% of 3-hydroxybutyrate and 2-7% of 3-hydroxyvalerate, whereas mannose-supplemented conditions produced the only homopolymer type of P(3HB). However, when propionic acid as a secondary carbon source were supplemented into the media, P. haeundaensis produced the copolymer P(3HB-co-3HV), composed of a 50% maximum monomeric unit of 3-hydroxyvaleric acid (3HV). However, as the concentration of propionic acid increased, cell biomass and PHAs concentrations substantially decreased due to cell toxicity.
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Affiliation(s)
- Seon Min Kim
- Department of Microbiology, College of Natural Sciences, Pukyong National University, Busan 48513, Republic of Korea
- School of Marine and Fisheries Life Science, Pukyong National University, Busan 48513, Republic of Korea
| | - Hye In Lee
- Department of Microbiology, College of Natural Sciences, Pukyong National University, Busan 48513, Republic of Korea
- School of Marine and Fisheries Life Science, Pukyong National University, Busan 48513, Republic of Korea
| | - Seung Won Nam
- Bioresources Collection and Research Team, Nakdonggang National Institute of Biological Resources, Sangju 37242, Republic of Korea
| | - Deok Hyeon Jin
- Bioresources Collection and Research Team, Nakdonggang National Institute of Biological Resources, Sangju 37242, Republic of Korea
| | - Gwi-Taek Jeong
- School of Marine and Fisheries Life Science, Pukyong National University, Busan 48513, Republic of Korea
- Department of Biotechnology, Pukyong National University, Busan 48513, Republic of Korea
| | - Soo-Wan Nam
- Department of Smart Bio-Health, Dong-eui University, Busan 47340, Republic of Korea
- Biomedical Engineering and Biotechnology Major, Division of Applied Bioengineering, College of Engineering, Dong-eui University, Busan 47340, Republic of Korea
| | - Brendan Burns
- School of Biotechnology & Biomolecular Science, The University of New South Wales, Sydney, NSW 2052, Australia
| | - Young Jae Jeon
- Department of Microbiology, College of Natural Sciences, Pukyong National University, Busan 48513, Republic of Korea
- School of Marine and Fisheries Life Science, Pukyong National University, Busan 48513, Republic of Korea
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Alves GC, da Silva TFR, Almeida LCH, Reis VM. Survival of five diazotrophic bacterial strains in different substrates used in sugarcane seedling propagation. Braz J Microbiol 2023; 54:2915-2926. [PMID: 37651089 PMCID: PMC10689310 DOI: 10.1007/s42770-023-01101-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 08/11/2023] [Indexed: 09/01/2023] Open
Abstract
An inoculant containing selected bacterial strains can be easily applied during the nursery please process, but in this case, substrate composition can affect its survival and, in consequence, bacterial colonization. The aim of this study was to evaluate the survival of five diazotrophic bacterial strains/species applied individually on 13 different substrates used in sugarcane seedling nurseries considering an active population higher than 105 cells g-1. In addition, one experiment was performed using two commercial substrates, coconut fiber, and Multiplant™, inoculated or not with a mixture of five bacterial strains to evaluate plant growth after 30 days. These strains are combined inoculants selected for sugarcane acting as plant growth promoters. Bacterial counts were determined every seven days using the Most Probable Number technique with four different semi-solid N-free media specific for each strain tested over 35 days. The survival order, independent of the substrate tested, was: Paraburkholderia tropica Pt-PPe8T > Nitrospirillum amazonense Na-CBAMc > Herbaspirillum seropedicae Hs-HRC54 = H. rubrisubalbicans Hr-HCC103 > Gluconacetobacter diazotrophicus Gd-PAL5T. All tested substrates influenced the bacterial survival, especially after 21 days of incubation. The population size can be partially controlled by the substrate pH and stimulated by the addition of slow-release fertilizer. Besides the differences in the bacterial population present in the two commercial substrates, plant growth was found to be stimulated by the inoculated bacteria, depending on the substrate and its sugarcane cultivar tested. The selection of a substrate used to produce new plantlets of sugarcane can contribute to bacterial survival and improve bacterial colonization.
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Affiliation(s)
- Gabriela Cavalcanti Alves
- Soil Department, Instituto de Agronomia, Universidade Federal Rural Do Rio de Janeiro-UFRRJ, Km 07 BR 465, Rio de Janeiro, 23890-000, Seropédica, Brazil
| | - Thamires Ferreira Rodrigues da Silva
- Soil Department, Instituto de Agronomia, Universidade Federal Rural Do Rio de Janeiro-UFRRJ, Km 07 BR 465, Rio de Janeiro, 23890-000, Seropédica, Brazil
| | - Lorraine Cristina Henrique Almeida
- Soil Department, Instituto de Agronomia, Universidade Federal Rural Do Rio de Janeiro-UFRRJ, Km 07 BR 465, Rio de Janeiro, 23890-000, Seropédica, Brazil
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Qin N, Li L, Wang Z, Shi S. Microbial production of odd-chain fatty acids. Biotechnol Bioeng 2023; 120:917-931. [PMID: 36522132 DOI: 10.1002/bit.28308] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Revised: 10/11/2022] [Accepted: 12/13/2022] [Indexed: 12/23/2022]
Abstract
Odd-chain fatty acids (OcFAs) and their derivatives have attracted much attention due to their beneficial physiological effects and their potential to be alternatives to advanced fuels. However, cells naturally produce even-chain fatty acids (EcFAs) with negligible OcFAs. In the process of biosynthesis of fatty acids (FAs), the acetyl-CoA serves as the starter unit for EcFAs, and propionyl-CoA works as the starter unit for OcFAs. The lack of sufficient propionyl-CoA, the precursor, is usually regarded as the main restriction for large-scale bioproduction of OcFAs. In recent years, synthetic biology strategies have been used to modify several microorganisms to produce more propionyl-CoA that would enable an efficient biosynthesis of OcFAs. This review discusses several reported and potential metabolic pathways for propionyl-CoA biosynthesis, followed by advances in engineering several cell factories for OcFAs production. Finally, trends and challenges of synthetic biology driven OcFAs production are discussed.
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Affiliation(s)
- Ning Qin
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China
| | - Lingyun Li
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China
| | - Zheng Wang
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China
| | - Shuobo Shi
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China
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From Organic Wastes and Hydrocarbons Pollutants to Polyhydroxyalkanoates: Bioconversion by Terrestrial and Marine Bacteria. SUSTAINABILITY 2022. [DOI: 10.3390/su14148241] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The use of fossil-based plastics has become unsustainable because of the polluting production processes, difficulties for waste management sectors, and high environmental impact. Polyhydroxyalkanoates (PHA) are bio-based biodegradable polymers derived from renewable resources and synthesized by bacteria as intracellular energy and carbon storage materials under nutrients or oxygen limitation and through the optimization of cultivation conditions with both pure and mixed culture systems. The PHA properties are affected by the same principles of oil-derived polyolefins, with a broad range of compositions, due to the incorporation of different monomers into the polymer matrix. As a consequence, the properties of such materials are represented by a broad range depending on tunable PHA composition. Producing waste-derived PHA is technically feasible with mixed microbial cultures (MMC), since no sterilization is required; this technology may represent a solution for waste treatment and valorization, and it has recently been developed at the pilot scale level with different process configurations where aerobic microorganisms are usually subjected to a dynamic feeding regime for their selection and to a high organic load for the intracellular accumulation of PHA. In this review, we report on studies on terrestrial and marine bacteria PHA-producers. The available knowledge on PHA production from the use of different kinds of organic wastes, and otherwise, petroleum-polluted natural matrices coupling bioremediation treatment has been explored. The advancements in these areas have been significant; they generally concern the terrestrial environment, where pilot and industrial processes are already established. Recently, marine bacteria have also offered interesting perspectives due to their advantageous effects on production practices, which they can relieve several constraints. Studies on the use of hydrocarbons as carbon sources offer evidence for the feasibility of the bioconversion of fossil-derived plastics into bioplastics.
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A Critical Review on the Economically Feasible and Sustainable Poly(3-Hydroxybutyrate- co-3-hydroxyvalerate) Production from Alkyl Alcohols. Polymers (Basel) 2022; 14:polym14040670. [PMID: 35215584 PMCID: PMC8876610 DOI: 10.3390/polym14040670] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 02/03/2022] [Accepted: 02/05/2022] [Indexed: 01/14/2023] Open
Abstract
Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (P(3HB-co-3HV)) is the most studied short-chain-length polyhydroxyalkanoates (PHA) with high application importance in various fields. The domination of high-cost propionate and valerate over other 3-hydroxyvalerate (3HV) precursors owing to their wide preference among PHA-producing bacteria has hindered the development of diverse production processes. As alkyl alcohols are mainly produced from inexpensive starting materials through oxo synthesis, they contribute a cost-effective advantage over propionate and valerate. Moreover, alkyl alcohols can be biosynthesized from natural substrates and organic wastes. Despite their great potential, their toxicity to most PHA-producing bacteria has been the major drawback for their wide implementation as 3HV precursors for decades. Although the standard PHA-producing bacteria Cupriavidus necator showed promising alcohol tolerance, the 3HV yield was discouraging. Continuous discovery of alkyl alcohols-utilizing PHA-producing bacteria has enabled broader choices in 3HV precursor selection for diverse P(3HB-co-3HV) production processes with higher economic feasibility. Besides continuous effort in searching for promising wild-type strains, genetic engineering to construct promising recombinant strains based on the understanding of the mechanisms involved in alkyl alcohols toxicity and tolerance is an alternative approach. However, more studies are required for techno-economic assessment to analyze the economic performance of alkyl alcohol-based production compared to that of organic acids.
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Rajesh Banu J, Ginni G, Kavitha S, Yukesh Kannah R, Kumar V, Adish Kumar S, Gunasekaran M, Tyagi VK, Kumar G. Polyhydroxyalkanoates synthesis using acidogenic fermentative effluents. Int J Biol Macromol 2021; 193:2079-2092. [PMID: 34774601 DOI: 10.1016/j.ijbiomac.2021.11.040] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2021] [Revised: 11/02/2021] [Accepted: 11/04/2021] [Indexed: 11/29/2022]
Abstract
Polyhydroxyalkanoates (PHA) are natural polyesters synthesized by microbes which consume excess amount of carbon and less amount of nutrients. It is biodegradable in nature, and it synthesized from renewable resources. It is considered as a future polymer, which act as an attractive replacement to petrochemical based polymers. The main hindrance to the commercial application of PHA is the high manufacturing cost. This article provides an overview of different cost-effective substrates, their characteristics and composition, major strains involved in economical production of PHA and biosynthetic pathways leading to accumulation of PHA. This review also covers the operational parameters, various fermentative modes including batch, fed-batch, repeated fed-batch and continuous fed-batch systems, along with advanced feeding strategies such as single pulse carbon feeding, feed forward control, intermittent carbon feeding, feast famine conditions to observe their effects for improving PHA synthesis and associated challenges. In addition, it also presents the economic analysis and future perspectives for the commercialization of PHA production process thereby making the process sustainable and lucrative with the possibility of commercial biomanufacturing.
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Affiliation(s)
- J Rajesh Banu
- Department of Life Sciences, Central University of Tamil Nadu, Neelakudi, Thiruvarur, Tamil Nadu 610005, India
| | - G Ginni
- Department of Civil Engineering, Amrita College of Engineering and Technology, Amritagiri, Nagercoil, Tamil Nadu, 629901, India
| | - S Kavitha
- Department of Civil Engineering, Anna University Regional Campus, Tirunelveli, Tamil Nadu, 627007, India
| | - R Yukesh Kannah
- Department of Civil Engineering, Anna University Regional Campus, Tirunelveli, Tamil Nadu, 627007, India; Department of Civil Engineering, National Institute of Technology Tiruchirappalli, Tamil Nadu, 620015, India
| | - Vinod Kumar
- School of Water, Energy and Environment, Cranfield University, Cranfield MK43 0AL, United Kingdom
| | - S Adish Kumar
- Department of Civil Engineering, Anna University Regional Campus, Tirunelveli, Tamil Nadu, 627007, India
| | - M Gunasekaran
- Department of Physics, Anna University Regional Campus, Tirunelveli, Tamil Nadu, 627007, India
| | - Vinay Kumar Tyagi
- Department of Civil Engineering, Indian Institute of Technology Roorkee, Roorkee, India
| | - Gopalakrishnan Kumar
- School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea; Institute of Chemistry, Bioscience and Environmental Engineering, Faculty of Science and Technology, University of Stavanger, Box 8600 Forus, 4036 Stavanger, Norway.
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Saratale RG, Cho SK, Saratale GD, Kumar M, Bharagava RN, Varjani S, Kadam AA, Ghodake GS, Palem RR, Mulla SI, Kim DS, Shin HS. An Overview of Recent Advancements in Microbial Polyhydroxyalkanoates (PHA) Production from Dark Fermentation Acidogenic Effluents: A Path to an Integrated Bio-Refinery. Polymers (Basel) 2021; 13:polym13244297. [PMID: 34960848 PMCID: PMC8704710 DOI: 10.3390/polym13244297] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Revised: 11/29/2021] [Accepted: 12/06/2021] [Indexed: 12/02/2022] Open
Abstract
Global energy consumption has been increasing in tandem with economic growth motivating researchers to focus on renewable energy sources. Dark fermentative hydrogen synthesis utilizing various biomass resources is a promising, less costly, and less energy-intensive bioprocess relative to other biohydrogen production routes. The generated acidogenic dark fermentative effluent [e.g., volatile fatty acids (VFAs)] has potential as a reliable and sustainable carbon substrate for polyhydroxyalkanoate (PHA) synthesis. PHA, an important alternative to petrochemical based polymers has attracted interest recently, owing to its biodegradability and biocompatibility. This review illustrates methods for the conversion of acidogenic effluents (VFAs), such as acetate, butyrate, propionate, lactate, valerate, and mixtures of VFAs, into the value-added compound PHA. In addition, the review provides a comprehensive update on research progress of VFAs to PHA conversion and related enhancement techniques including optimization of operational parameters, fermentation strategies, and genetic engineering approaches. Finally, potential bottlenecks and future directions for the conversion of VFAs to PHA are outlined. This review offers insights to researchers on an integrated biorefinery route for sustainable and cost-effective bioplastics production.
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Affiliation(s)
- Rijuta Ganesh Saratale
- Research Institute of Biotechnology and Medical Converged Science, Dongguk University-Seoul, Ilsandong-gu, Goyang-si 10326, Gyeonggido, Korea; (R.G.S.); (A.A.K.)
| | - Si-Kyung Cho
- Department of Biological and Environmental Science, Dongguk University, Ilsandong-gu, Goyang-si 10326, Gyonggido, Korea; (S.-K.C.); (G.S.G.)
| | - Ganesh Dattatraya Saratale
- Department of Food Science and Biotechnology, Dongguk University-Seoul, Ilsandong-gu, Goyang-si 10326, Gyeonggido, Korea;
- Correspondence:
| | - Manu Kumar
- Department of Life Science, Dongguk University-Seoul, 32 Dongguk-ro, Ilsandong-gu, Goyang-si 10326, Gyeonggi-do, Korea;
| | - Ram Naresh Bharagava
- Department of Environmental Microbiology, School for Environmental Sciences Babasaheb Bhimrao Ambedkar University, Vidya Vihar 226 025, Uttar Pradesh, India;
| | - Sunita Varjani
- Gujarat Pollution Control Board, Gandhinagar 382 010, Gujarat, India;
| | - Avinash A. Kadam
- Research Institute of Biotechnology and Medical Converged Science, Dongguk University-Seoul, Ilsandong-gu, Goyang-si 10326, Gyeonggido, Korea; (R.G.S.); (A.A.K.)
| | - Gajanan S. Ghodake
- Department of Biological and Environmental Science, Dongguk University, Ilsandong-gu, Goyang-si 10326, Gyonggido, Korea; (S.-K.C.); (G.S.G.)
| | - Ramasubba Reddy Palem
- Department of Medical Biotechnology, Dongguk University Biomedical, Campus 32, Seoul 10326, Korea;
| | - Sikandar I. Mulla
- Department of Biochemistry, School of Applied Sciences, REVA University, Bangalore 560 064, India;
| | - Dong-Su Kim
- Department of Environmental Science and Engineering, Ewha Womans University, Seoul 03760, Korea;
| | - Han-Seung Shin
- Department of Food Science and Biotechnology, Dongguk University-Seoul, Ilsandong-gu, Goyang-si 10326, Gyeonggido, Korea;
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Production and optimization of polyhydroxyalkanoates (PHAs) from paraburkholderia sp. PFN 29 under submerged fermentation. ELECTRON J BIOTECHN 2021. [DOI: 10.1016/j.ejbt.2021.12.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Malán AK, Tuleski T, Catalán AI, de Souza EM, Batista S. Herbaspirillum seropedicae expresses non-phosphorylative pathways for D-xylose catabolism. Appl Microbiol Biotechnol 2021; 105:7339-7352. [PMID: 34499201 DOI: 10.1007/s00253-021-11507-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 07/15/2021] [Accepted: 07/29/2021] [Indexed: 10/20/2022]
Abstract
Herbaspirillum seropedicae is a β-proteobacterium that establishes as an endophyte in various plants. These bacteria can consume diverse carbon sources, including hexoses and pentoses like D-xylose. D-xylose catabolic pathways have been described in some microorganisms, but databases of genes involved in these routes are limited. This is of special interest in biotechnology, considering that D-xylose is the second most abundant sugar in nature and some microorganisms, including H. seropedicae, are able to accumulate poly-3-hydroxybutyrate when consuming this pentose as a carbon source. In this work, we present a study of D-xylose catabolic pathways in H. seropedicae strain Z69 using RNA-seq analysis and subsequent analysis of phenotypes determined in targeted mutants in corresponding identified genes. G5B88_22805 gene, designated xylB, encodes a NAD+-dependent D-xylose dehydrogenase. Mutant Z69∆xylB was still able to grow on D-xylose, although at a reduced rate. This appears to be due to the expression of an L-arabinose dehydrogenase, encoded by the araB gene (G5B88_05250), that can use D-xylose as a substrate. According to our results, H. seropedicae Z69 uses non-phosphorylative pathways to catabolize D-xylose. The lower portion of metabolism involves co-expression of two routes: the Weimberg pathway that produces α-ketoglutarate and a novel pathway recently described that synthesizes pyruvate and glycolate. This novel pathway appears to contribute to D-xylose metabolism, since a mutant in the last step, Z69∆mhpD, was able to grow on this pentose only after an extended lag phase (40-50 h). KEY POINTS: • xylB gene (G5B88_22805) encodes a NAD+-dependent D-xylose dehydrogenase. • araB gene (G5B88_05250) encodes a L-arabinose dehydrogenase able to recognize D-xylose. • A novel route involving mhpD gene is preferred for D-xylose catabolism.
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Affiliation(s)
- Ana Karen Malán
- Laboratorio Microbiología Molecular- Depto. BIOGEM, Instituto de Investigaciones Biológicas Clemente Estable (IIBCE), Montevideo, Uruguay.
| | - Thalita Tuleski
- Department of Biochemistry and Molecular Biology, Universidade Federal Do Paraná, Curitiba, PR, Brazil
| | - Ana Inés Catalán
- Laboratorio Microbiología Molecular- Depto. BIOGEM, Instituto de Investigaciones Biológicas Clemente Estable (IIBCE), Montevideo, Uruguay
| | - Emanuel Maltempi de Souza
- Department of Biochemistry and Molecular Biology, Universidade Federal Do Paraná, Curitiba, PR, Brazil
| | - Silvia Batista
- Laboratorio Microbiología Molecular- Depto. BIOGEM, Instituto de Investigaciones Biológicas Clemente Estable (IIBCE), Montevideo, Uruguay
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Jeremy Wong HS, Huong KH, Shafie NAH, Amirul AAA. Genetic incorporation of oil-utilizing ability in Cupriavidus malaysiensis USMAA2-4 for sustainable polyhydroxyalkanoates production from palm olein and 1-pentanol. J Biotechnol 2021; 337:71-79. [PMID: 34233208 DOI: 10.1016/j.jbiotec.2021.07.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 06/29/2021] [Accepted: 07/01/2021] [Indexed: 11/25/2022]
Abstract
The sustainability in polyhydroxyalkanoates (PHA) production is drawing increasing attention as the effort to increase the economic feasibility for commercialization pursues. Oleic acid is widely preferred by bacteria but its employment for PHA production makes sustainability rather dubious. This study showed promising poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [P(3HB-co-3HV)] content of 68 wt % by lipase genes-harbouring Cupriavidus malaysiensis USMAA2-4 transformant from palm olein and 1-pentanol. High oleic acid content and low oil saturation caused palm olein to outperform crude palm oil, crude palm kernel oil and soybean oil due to its preference for oleic acid shown by previous screening. The transformant showed 8-fold and 40-fold higher lipase activity compared to C. necator H16 and its wild-type respectively. The transformant was unaffected by Co2+ but the growth of C. necator H16 was inversely proportional to Co2+ concentration and the employment of 1-pentanol also ceased its growth and PHA accumulation. Although the inhibitory effect of Fe2+, Cu2+ and Zn2+ at high molarity on LipA decreased PHA content of C. malaysiensis USMAA2-4 transformant by 23-24 wt %, the lipase activity was restorable with high molarity of Ca2+, thus resulted in higher PHA content. The transformant enabled the employment of low-cost 1-pentanol as the precursor for cost-effective PHA production and its preference for palm olein contributed to higher sustainability.
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Affiliation(s)
- Hau Seung Jeremy Wong
- School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, 11800, Malaysia; Centre for Chemical Biology, Sains@USM, Bayan Lepas, Penang, 11900, Malaysia.
| | - Kai Hee Huong
- School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, 11800, Malaysia; Centre for Chemical Biology, Sains@USM, Bayan Lepas, Penang, 11900, Malaysia.
| | | | - Al-Ashraf Abdullah Amirul
- School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, 11800, Malaysia; Centre for Chemical Biology, Sains@USM, Bayan Lepas, Penang, 11900, Malaysia.
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Huang L, Chen Z, Wen Q, Ji Y, Wu Z, Lee DJ. Toward flexible regulation of polyhydroxyalkanoate composition based on substrate feeding strategy: Insights into microbial community and metabolic features. BIORESOURCE TECHNOLOGY 2020; 296:122369. [PMID: 31732415 DOI: 10.1016/j.biortech.2019.122369] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2019] [Revised: 11/01/2019] [Accepted: 11/02/2019] [Indexed: 06/10/2023]
Abstract
The suitable feeding strategy considering both substrate preference (enrichment stage) and flexible regulation (PHA accumulation stage) were investigated, respectively, based on intracellular polymers synthesis peculiarities of the three types of cultures (M-Ac, M-Pr and M-Bu), which were enriched correspondingly using acetic type, propionic type and butyric type substrate. Compared to M-Ac and M-Bu cultures, maximum PHA content (PHAm) of M-Pr exhibited the most stable responses to varying fractions of propionic acid (fPr) of the substrate. The substrate composed of acetic acid and propionic acid (Mix-AP) demonstrated higher efficiency in regulation of polymer composition than that composed of butyric acid and propionic acid (Mix-BP). For the whole process of three-stage MC PHA production, propionic acid-dominated acidification products should be used for the long-term enrichment of PHA producers, and acidification products mainly composed of propionic and acetic acid are preferred considering the regulation of polymer composition in PHA accumulation stage.
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Affiliation(s)
- Long Huang
- School of Water Conservancy and Environment Engineering, Zhengzhou University, Zhengzhou 450002, China
| | - Zhiqiang Chen
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Qinxue Wen
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin 150090, China.
| | - Ye Ji
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Zening Wu
- School of Water Conservancy and Environment Engineering, Zhengzhou University, Zhengzhou 450002, China
| | - Duu-Jong Lee
- Department of Chemical Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan; Department of Chemical Engineering, National Taiwan University, Taipei 106, Taiwan
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