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Shen G, Yang L, Lv X, Zhang Y, Hou X, Li M, Zhou M, Pan L, Chen A, Zhang Z. Antibiofilm Activity and Mechanism of Linalool against Food Spoilage Bacillus amyloliquefaciens. Int J Mol Sci 2023; 24:10980. [PMID: 37446158 DOI: 10.3390/ijms241310980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 06/20/2023] [Accepted: 06/29/2023] [Indexed: 07/15/2023] Open
Abstract
Pellicle biofilm-forming bacteria Bacillus amyloliquefaciens are the major spoilage microorganisms of soy products. Due to their inherent resistance to antibiotics and disinfectants, pellicle biofilms formed are difficult to eliminate and represent a threat to food safety. Here, we assessed linalool's ability to prevent the pellicle of two spoilage B. amyloliquefaciens strains. The minimum biofilm inhibitory concentration (MBIC) of linalool against B. amyloliquefaciens DY1a and DY1b was 4 μL/mL and 8 μL/mL, respectively. The MBIC of linalool had a considerable eradication rate of 77.15% and 83.21% on the biofilm of the two strains, respectively. Scanning electron microscopy observations revealed that less wrinkly and thinner pellicle biofilms formed on a medium supplemented with 1/2 MBIC and 1/4 MBIC linalool. Also, linalool inhibited cell motility and the production of extracellular polysaccharides and proteins of the biofilm matrix. Furthermore, linalool exposure reduced the cell surface hydrophobicity, zeta potential, and cell auto-aggregation of B. amyloliquefaciens. Molecular docking analysis demonstrated that linalool interacted strongly with quorum-sensing ComP receptor and biofilm matrix assembly TasA through intermolecular hydrogen bonds, hydrophobic contacts, and van der Waals forces interacting with site residues. Overall, our findings suggest that linalool may be employed as a potential antibiofilm agent to control food spoilage B. amyloliquefaciens.
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Affiliation(s)
- Guanghui Shen
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Lu Yang
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Xinyu Lv
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Yingfan Zhang
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Xiaoyan Hou
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Meiliang Li
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Man Zhou
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Le Pan
- Chemical Engineering College, Xinjiang Agricultural University, Urumqi 830052, China
| | - Anjun Chen
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
| | - Zhiqing Zhang
- College of Food Science, Sichuan Agricultural University, Ya'an 625014, China
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Biodegradation of highly crystallized poly(ethylene terephthalate) through cell surface codisplay of bacterial PETase and hydrophobin. Nat Commun 2022; 13:7138. [PMID: 36414665 PMCID: PMC9681837 DOI: 10.1038/s41467-022-34908-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 11/10/2022] [Indexed: 11/23/2022] Open
Abstract
The process of recycling poly(ethylene terephthalate) (PET) remains a major challenge due to the enzymatic degradation of high-crystallinity PET (hcPET). Recently, a bacterial PET-degrading enzyme, PETase, was found to have the ability to degrade the hcPET, but with low enzymatic activity. Here we present an engineered whole-cell biocatalyst to simulate both the adsorption and degradation steps in the enzymatic degradation process of PETase to achieve the efficient degradation of hcPET. Our data shows that the adhesive unit hydrophobin and degradation unit PETase are functionally displayed on the surface of yeast cells. The turnover rate of the whole-cell biocatalyst toward hcPET (crystallinity of 45%) dramatically increases approximately 328.8-fold compared with that of purified PETase at 30 °C. In addition, molecular dynamics simulations explain how the enhanced adhesion can promote the enzymatic degradation of PET. This study demonstrates engineering the whole-cell catalyst is an efficient strategy for biodegradation of PET.
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Gomes LC, Saubade F, Amin M, Spall J, Liauw CM, Mergulhão F, Whitehead KA. A Comparison of Vegetable Leaves and Replicated Biomimetic Surfaces on the Binding of Escherichia coli and Listeria monocytogenes. FOOD AND BIOPRODUCTS PROCESSING 2022. [DOI: 10.1016/j.fbp.2022.11.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Prakash J, Venkataprasanna KS, Venkatasubbu GD. Investigation on visible light-driven antimicrobial and mechanistic activity of GO/TiO 2(V–N) nanocomposite against wound pathogens. NEW J CHEM 2022. [DOI: 10.1039/d2nj01634f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
GO/TiO2(V–N) is fabricated as a visible light driven efficient antimicrobial material. In the presence of light, GO/TiO2(V–N) was employed as a photocatalytic active material against wound pathogens.
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Affiliation(s)
- J. Prakash
- Department of Nanotechnology, SRM Institute of Science and Technology, Kattankulathur, Chengalpattu District, 603 203, Tamil Nadu, India
| | | | - G. Devanand Venkatasubbu
- Department of Nanotechnology, SRM Institute of Science and Technology, Kattankulathur, Chengalpattu District, 603 203, Tamil Nadu, India
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Surface Properties and Adherence of Bradyrhizobium diazoefficiens to Glycine max Roots Are Altered When Grown in Soil Extracted Nutrients. NITROGEN 2021. [DOI: 10.3390/nitrogen2040031] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Soybean roots are colonized and nodulated by multiple strains of compatible nitrogen-fixing rhizobia primarily belonging to the Genus Bradyrhizobium. Motility towards the root and attachment to root hairs are key determinants of competitive colonization and subsequent nodulation. Bacterial surface properties and motility are known to vary with chemical composition of the culture medium, and root adhesion and nodulation occur in a soil environment rather than laboratory medium. We asked whether the nodulation-promoting factors motility, surface hydrophobicity and surface adhesion of Bradyrhizobium are affected by growth in a soil nutrient environment. B. diazoefficiens USDA 110, 126, 3384, and B. elkanii USDA 26 were grown in mineral salt medium with peptone, yeast extract and arabinose (PSY), and in a soil extracted soluble organic matter (SESOM) medium. Surface hydrophobicity was determined by partitioning into hydrocarbon, motility by transition through soft agar, and surface-exposed saccharides by lectin profiling, followed by biofilm formation and soybean root adhesion capacity of populations. SESOM-grown populations were generally less motile and more hydrophobic. They bound fewer lectins than PSY-grown populations, indicating a simpler surface saccharide profile. SESOM populations of USDA 110 did not form detectable biofilm, but showed increased binding to soy roots. Our results indicate that growth in a soil environment impacts surface properties, motility, and subsequent soy root adhesion propensity. Hence, evaluation of Bradyrhizobium for nodulation efficiency should be performed using soil from the specific field where the soybeans are to be planted, rather than laboratory culture media.
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Photo induced mechanistic activity of GO/Zn(Cu)O nanocomposite against infectious pathogens: Potential application in wound healing. Photodiagnosis Photodyn Ther 2021; 34:102291. [PMID: 33862280 DOI: 10.1016/j.pdpdt.2021.102291] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 03/26/2021] [Accepted: 04/09/2021] [Indexed: 11/23/2022]
Abstract
Treating infection causing microorganisms is one of the major challenges in wound healing. These may gain resistance due to the overuse of conventional antibiotics. A promising technique is antimicrobial photodynamic therapy (aPDT) used to selectively cause damage to infectious pathogenic cells via generation of reactive oxygen species (ROS). We report on biocompatable nanomaterials that can serve as potential photosensitizers for aPDT. GO/Zn(Cu)O nanocomposite was synthesized by co-precipitation method. Graphene Oxide (GO) is known for its high surface to volume ratio, excellent surface functionality and enhanced antimicrobial property. ZnO nanoparticle induces the generation of reactive oxygen species (ROS) under light irradiation and it leads to recombination of electron-hole pair. Nanocomposites of GO and Cu doped ZnO increases visible light absorption and enhances the photocatalytic property. It generates more ROS and increases the bacterial inhibition. GO/Zn(Cu)O nanocomposite was tested against Staphylococcus aureus (S. aureus), Enterococcus faecium (E. faecium), Escherichia coli (E. coli), Salmonella typhi (S. typhi), Shigella flexneri (S. flexneri) and Pseudomonas aeruginosa (P. aeruginosa) by well diffusion method, growth curve, colony count, biofilm formation under both dark and visible light condition. Reactive Oxygen Species assay (ROS), Lactate dehydrogenase leakage (LDH) assay, Protein estimation assay and membrane integrity study proves the mechanism of inhibition of bacteria. Inhibition kinetics shows the sensitivity between bacteria and GO/Zn(Cu)O nanocomposite.
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Alotaibi GF. Occurrence of Potentially Pathogenic Bacteria in Epilithic Biofilm Forming Bacteria isolated from Porter Brook River-stones, Sheffield, UK. Saudi J Biol Sci 2020; 27:3405-3414. [PMID: 33304149 PMCID: PMC7715045 DOI: 10.1016/j.sjbs.2020.09.030] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Revised: 09/13/2020] [Accepted: 09/14/2020] [Indexed: 10/24/2022] Open
Abstract
Biofilms in aquatic ecosystems develop on wet benthic surfaces and are primarily comprised of various allochthonous microorganisms, including bacteria embedded within a self-produced matrix of extracellular polymeric substances (EPS). In such environment, where there is a continuous flow of water, attachment of microbes to surfaces prevents cells being washed out of a suitable habitat with the added benefits of the water flow and the surface itself providing nutrients for growth of attached cells. When watercourses are contaminated with pathogenic bacteria, these can become incorporated into biofilms. This study aimed to isolate and identify the bacterial species within biofilms retrieved from river-stones found in the Porter Brook, Sheffield based on morphological, biochemical characteristics and molecular characteristics, such as 16S rDNA sequence phylogeny analysis. Twenty-two bacterial species were identified. Among these were 10 gram-negative pathogenic bacteria, establishing that potential human pathogens were present within the biofilms. Klebsiella pneumoniae MBB9 isolate showed the greatest ability to form a biofilm using a microtiter plate-based crystal violet assay. Biofilm by K. pneumoniae MBB9 formed rapidly (within 6 h) under static conditions at 37 °C and then increased up to 24 h of incubation before decreasing with further incubation (48 h), whereas the applied shear forces (horizontal orbital shaker; diameter of 25 mm at 150 rpm) had no effect on K. pneumoniae MBB9 biofilm formation.
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Affiliation(s)
- Ghazay F. Alotaibi
- Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom
- Department of Environment and Marine Biology, Saline Water Desalination Technologies Research Institute, P.O. 8328 Al-Jubail 31951 Al-Jubail, Saudi Arabia
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Sharma M, Saleh D, Charron JB, Jabaji S. A Crosstalk Between Brachypodium Root Exudates, Organic Acids, and Bacillus velezensis B26, a Growth Promoting Bacterium. Front Microbiol 2020; 11:575578. [PMID: 33123106 PMCID: PMC7573104 DOI: 10.3389/fmicb.2020.575578] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 09/10/2020] [Indexed: 12/23/2022] Open
Abstract
Plant growth-promoting rhizobacteria (PGPR) are associated with plant roots and use organic compounds that are secreted from root exudates as food and energy source. Root exudates can chemoattract and help bacteria to colonize the surface of plant roots by inducing chemotactic responses of rhizospheric bacteria. In this study, we show that root colonization of Brachypodium distachyon by Bacillus velezensis strain B26 depends on several factors. These include root exudates, organic acids, and their biosynthetic genes, chemotaxis, biofilm formation and the induction of biofilm encoding genes. Analysis of root exudates by GC-MS identified five intermediates of the TCA cycle; malic, fumaric, citric, succinic, oxaloacetic acids, and were subsequently evaluated. The strongest chemotactic responses were induced by malic, succinic, citric, and fumaric acids. In comparison, the biofilm formation was induced by all organic acids with maximal induction by citric acid. Relative to the control, the individual organic acids, succinic and citric acids activated the epsD gene related to EPS biofilm, and also the genes encoding membrane protein (yqXM) and hydrophobin component (bslA) of the biofilm of strain B26. Whereas epsA and epsB genes were highly induced genes by succinic acid. Similarly, concentrated exudates released from inoculated roots after 48 h post-inoculation also induced all biofilm-associated genes. The addition of strain B26 to wild type and to icdh mutant line led to a slight induction but not biologically significant relative to their respective controls. Thus, B26 has no effect on the expression of the ICDH gene, both in the wild type and the mutant backgrounds. Our results indicate that root exudates and individual organic acids play an important role in selective recruitment and colonization of PGPR and inducing biofilm. The current study increases the understanding of molecular mechanisms behind biofilm induction by organic acids.
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Affiliation(s)
- Meha Sharma
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, Montreal, QC, Canada
| | - Dina Saleh
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, Montreal, QC, Canada
| | - Jean-Benoit Charron
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, Montreal, QC, Canada
| | - Suha Jabaji
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, Montreal, QC, Canada
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Ibrahim S, Abdul Khalil K, Zahri KNM, Gomez-Fuentes C, Convey P, Zulkharnain A, Sabri S, Alias SA, González-Rocha G, Ahmad SA. Biosurfactant Production and Growth Kinetics Studies of the Waste Canola Oil-Degrading Bacterium Rhodococcus erythropolis AQ5-07 from Antarctica. Molecules 2020; 25:E3878. [PMID: 32858796 PMCID: PMC7503493 DOI: 10.3390/molecules25173878] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 07/27/2020] [Accepted: 07/28/2020] [Indexed: 11/26/2022] Open
Abstract
With the progressive increase in human activities in the Antarctic region, the possibility of domestic oil spillage also increases. Developing means for the removal of oils, such as canola oil, from the environment and waste "grey" water using biological approaches is therefore desirable, since the thermal process of oil degradation is expensive and ineffective. Thus, in this study an indigenous cold-adapted Antarctic soil bacterium, Rhodococcus erythropolis strain AQ5-07, was screened for biosurfactant production ability using the multiple approaches of blood haemolysis, surface tension, emulsification index, oil spreading, drop collapse and "MATH" assay for cellular hydrophobicity. The growth kinetics of the bacterium containing different canola oil concentration was studied. The strain showed β-haemolysis on blood agar with a high emulsification index and low surface tension value of 91.5% and 25.14 mN/m, respectively. Of the models tested, the Haldane model provided the best description of the growth kinetics, although several models were similar in performance. Parameters obtained from the modelling were the maximum specific growth rate (qmax), concentration of substrate at the half maximum specific growth rate, Ks% (v/v) and the inhibition constant Ki% (v/v), with values of 0.142 h-1, 7.743% (v/v) and 0.399% (v/v), respectively. These biological coefficients are useful in predicting growth conditions for batch studies, and also relevant to "in field" bioremediation strategies where the concentration of oil might need to be diluted to non-toxic levels prior to remediation. Biosurfactants can also have application in enhanced oil recovery (EOR) under different environmental conditions.
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Affiliation(s)
- Salihu Ibrahim
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia; (S.I.); (K.N.M.Z.)
| | - Khalilah Abdul Khalil
- School of Biology, Faculty of Applied Sciences, Universiti Teknologi MARA, Shah Alam, Selangor 40450, Malaysia;
| | - Khadijah Nabilah Mohd Zahri
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia; (S.I.); (K.N.M.Z.)
| | - Claudio Gomez-Fuentes
- Department of Chemical Engineering, Universidad de Magallanes, Avda. Bulnes 01855, Punta Arenas, Región de Magallanes y Antártica Chilena, Chile;
| | - Peter Convey
- British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge CB3 0ET, UK;
| | - Azham Zulkharnain
- Department of Bioscience and Engineering, College of system Engineering and Science, Shibaura Institute of Technology, 307 Fukasaku, Minuma-ku, Saitama 337-8570, Japan;
| | - Suriana Sabri
- Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia;
| | - Siti Aisyah Alias
- National Antarctic Research Centre, B303 Level 3, Block B, IPS Building, Universiti Malaya, Kuala Lumpur 50603, Malaysia;
- Institute of Ocean and Earth Sciences, Universiti Malaya, B303 Level 3, Block B, Lembah Pantai, Kuala Lumpur 50603, Malaysia
| | - Gerardo González-Rocha
- Laboratorio de Investigacion en Agentes Antibacterianos, Facultad de Ciencias Biologicas, Universidad de Concepcion, Concepcion 4070386, Chile;
| | - Siti Aqlima Ahmad
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia; (S.I.); (K.N.M.Z.)
- National Antarctic Research Centre, B303 Level 3, Block B, IPS Building, Universiti Malaya, Kuala Lumpur 50603, Malaysia;
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Biophysical methods to quantify bacterial behaviors at oil-water interfaces. J Ind Microbiol Biotechnol 2020; 47:725-738. [PMID: 32743734 DOI: 10.1007/s10295-020-02293-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 07/16/2020] [Indexed: 02/03/2023]
Abstract
Motivated by the need for improved understanding of physical processes involved in bacterial biodegradation of catastrophic oil spills, we review biophysical methods to probe bacterial motility and adhesion at oil-water interfaces. This review summarizes methods that probe bulk, average behaviors as well as local, microscopic behaviors, and highlights opportunities for future work to bridge the gap between biodegradation and biophysics.
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Saleh D, Sharma M, Seguin P, Jabaji S. Organic acids and root exudates of Brachypodium distachyon: effects on chemotaxis and biofilm formation of endophytic bacteria. Can J Microbiol 2020; 66:562-575. [PMID: 32348684 DOI: 10.1139/cjm-2020-0041] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Root colonization by plant-growth-promoting bacteria could not be useful without the beneficial properties of the bacterium itself. Thus, it is necessary to evaluate the bacterial capacity to form biofilms and establish a successful interaction with the plant roots. We assessed the ability of growth-promoting bacterial strains to form biofilm and display chemotactic behaviour in response to organic acids and (or) root exudates of the model plant Brachypodium distachyon. This assessment was based on the evaluation of single strains of bacteria and a multispecies consortium. The strains coexisted together and formed biofilm under biotic (living root) and abiotic (glass) surfaces. Citric acid stimulated biofilm formation in all individual strains, indicating a strong chemotactic behaviour towards organic acids. Recognizing that the transition from single strains of bacteria to a "multicellular" system would not happen without the presence of adhesion, the alginate and exopolysaccharide (EPS) contents were evaluated. The EPS amounts were comparable in single strains and consortium forms. Alginate production increased 160% in the consortium subjected to drought stress (10% PEG). These findings demonstrated that (i) bacteria-bacteria interaction is the hub of various factors that would not only affect their relation but also could indirectly affect the balanced plant-microbe relation and (ii) root exudates could be very selective in recruiting a highly qualified multispecies consortium.
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Affiliation(s)
- Dina Saleh
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada.,Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada
| | - Meha Sharma
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada.,Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada
| | - Philippe Seguin
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada.,Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada
| | - Suha Jabaji
- Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada.,Department of Plant Science, Faculty of Agricultural and Environmental Sciences, McGill University, 21 111 Lakeshore Drive, Sainte-Anne-de-Bellevue, Quebec H9X 3V9, Canada
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Gupta B, Puri S, Thakur IS, Kaur J. Comparative evaluation of growth kinetics for pyrene degradation by Acinetobacter pittii NFL and Enterobacter cloacae BT in the presence of biosurfactant. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.biteb.2019.100369] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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13
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May HC, Yu JJ, Shrihari S, Seshu J, Klose KE, Cap AP, Chambers JP, Guentzel MN, Arulanandam BP. Thioredoxin Modulates Cell Surface Hydrophobicity in Acinetobacter baumannii. Front Microbiol 2019; 10:2849. [PMID: 31921031 PMCID: PMC6927278 DOI: 10.3389/fmicb.2019.02849] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 11/25/2019] [Indexed: 12/04/2022] Open
Abstract
Acinetobacter baumannii, a Gram-negative coccobacillus, has become a prevalent nosocomial health threat affecting the majority of hospitals both in the U.S. and around the globe. Microbial cell surface hydrophobicity (CSH) has previously been correlated with virulence, uptake by immune cells, and attachment to epithelial cells. A mutant strain of A. baumannii (ΔtrxA) lacking the redox protein thioredoxin A was found to be more hydrophobic than its wild type (WT) and complemented counterparts, as measured by both Microbial Adhesion to Hydrocarbon (MATH) and salt aggregation. The hydrophobicity of the mutant could be abrogated through treatment with sodium cyanoborohydride (SCBH). This modulation correlated with reduction of disulfide bonds, as SCBH was able to reduce 5,5′-dithio-bis-[2-nitrobenzoic acid] and treatment with the known disulfide reducer, β-mercaptoethanol, also decreased ΔtrxA CSH. Additionally, the ΔtrxA mutant was more readily taken up than WT by J774 macrophages and this differential uptake could be abrogated though SCBH treatment. When partitioned into aqueous and hydrophobic phases, ΔtrxA recovered from the hydrophobic partition was phagocytosed more readily than from the aqueous phase further supporting the contribution of CSH to A. baumannii uptake by phagocytes. A second Gram-negative bacterium, Francisella novicida, also showed the association of TrxA deficiency (FnΔtrxA) with increased hydrophobicity and uptake by J774 cells. We previously have demonstrated that modification of the type IV pilus system (T4P) was associated with the A. baumannii ΔtrxA phenotype, and the Francisella FnΔtrxA mutant also was found to have a marked T4P deficiency. Interestingly, a F. novicida mutant lacking pilT also showed increased hydrophobicity over FnWT. Collective evidence presented in this study suggests that Gram-negative bacterial thioredoxin mediates CSH through multiple mechanisms including disulfide-bond reduction and T4P modulation.
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Affiliation(s)
- Holly C May
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
| | - Jieh-Juen Yu
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
| | - Swathi Shrihari
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
| | - Janakiram Seshu
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
| | - Karl E Klose
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
| | - Andrew P Cap
- Acute Combat Casualty Care Research Division, U.S. Army Institute for of Surgical Research, JBSA-Fort Sam Houston, San Antonio, TX, United States
| | - James P Chambers
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
| | - M Neal Guentzel
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
| | - Bernard P Arulanandam
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, United States
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Synthesis of titanium oxide nanoparticles using Aloe barbadensis mill and evaluation of its antibiofilm potential against Pseudomonas aeruginosa PAO1. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2019; 201:111667. [DOI: 10.1016/j.jphotobiol.2019.111667] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Revised: 08/28/2019] [Accepted: 10/21/2019] [Indexed: 11/22/2022]
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15
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Iyer D, Gulyuk AV, Reddy P, Kirste R, Collazo R, LaJeunesse DR, Ivanisevic A. Behavior of E. coli with Variable Surface Morphology Changes on Charged Semiconductor Interfaces. ACS APPLIED BIO MATERIALS 2019; 2:4044-4051. [PMID: 35021338 PMCID: PMC10167750 DOI: 10.1021/acsabm.9b00573] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Bacterial behavior is often controlled by structural and composition elements of their cell wall. Using genetic mutant strains that change specific aspects of their surface structure, we modified bacterial behavior in response to semiconductor surfaces. We monitored the adhesion, membrane potential, and catalase activity of the Gram-negative bacterium Escherichia coli (E. coli) that were mutant for genes encoding components of their surface architecture, specifically flagella, fimbriae, curli, and components of the lipopolysaccharide membrane, while on gallium nitride (GaN) surfaces with different surface potentials. The bacteria and the semiconductor surface properties were recorded prior to the biofilm studies. The data from the materials and bioassays characterization supports the notion that alteration of the surface structure of the E. coli bacterium resulted in changes to bacterium behavior on the GaN medium. Loss of specific surface structure on the E. coli bacterium reduced its sensitivity to the semiconductor interfaces, while other mutations increase bacterial adhesion when compared to the wild-type control E. coli bacteria. These results demonstrate that bacterial behavior and responses to GaN semiconductor materials can be controlled genetically and can be utilized to tune the fate of living bacteria on GaN surfaces.
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Affiliation(s)
- Divya Iyer
- Department of Nanoscience, Joint School of Nanoscience and Nanoengineering, University of North Carolina-Greensboro, Greensboro, North Carolina 27401, United States
| | - Alexey V. Gulyuk
- Department of Materials Science and Engineering, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Pramod Reddy
- Adroit Materials, 2054 Kildaire Farm Road, Suite 205, Cary, North Carolina 27518, United States
| | - Ronny Kirste
- Adroit Materials, 2054 Kildaire Farm Road, Suite 205, Cary, North Carolina 27518, United States
| | - Ramon Collazo
- Department of Materials Science and Engineering, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Dennis R. LaJeunesse
- Department of Nanoscience, Joint School of Nanoscience and Nanoengineering, University of North Carolina-Greensboro, Greensboro, North Carolina 27401, United States
| | - Albena Ivanisevic
- Department of Materials Science and Engineering, North Carolina State University, Raleigh, North Carolina 27695, United States
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16
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Nachtigall C, Weber C, Rothenburger S, Jaros D, Rohm H. Test parameters and cell chain length of Streptococcus thermophilus affect the microbial adhesion to hydrocarbons assay: a methodical approach. FEMS Microbiol Lett 2019; 366:5528314. [DOI: 10.1093/femsle/fnz150] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Accepted: 07/01/2019] [Indexed: 01/01/2023] Open
Abstract
ABSTRACTThe microbial adhesion to hydrocarbons (MATH) test is one of the most common method to determine the hydrophobicity of cell surfaces. Despite its prevalence, no standard test parameters are used in literature, making a direct comparison of data almost impossible. Criticism also focuses on test parameters that may mask hydrophobic interactions and hence lead to erroneous test results. We methodically investigated the impact of different MATH test parameters on the calculation of the cell surface hydrophobicity of Streptococcus thermophilus, a widespread exopolysaccharide-producing lactic acid bacterium used in the production of fermented milk products. Besides composition and ionic strength of the buffer used for cell re-suspension, we observed a pronounced time dependency of the turbidity of the cell suspension during phase separation due to sedimentation and/or cell lysis. A new modification of the MATH assay was applied to enable the determination of cell surface hydrophobicity of long chain-forming bacteria. As the cell surface hydrophobicity was not altered during exponential growth phase, we assume that the cell surface and its capsular exopolysaccharide layer are not changed during cultivation.
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Affiliation(s)
- Carsten Nachtigall
- Chair of Food Engineering, Institute of Natural Materials Technology, Technische Universität Dresden, D-01062 Dresden, Germany
| | - Carmen Weber
- Chair of Food Engineering, Institute of Natural Materials Technology, Technische Universität Dresden, D-01062 Dresden, Germany
| | - Sandra Rothenburger
- Chair of Food Engineering, Institute of Natural Materials Technology, Technische Universität Dresden, D-01062 Dresden, Germany
| | - Doris Jaros
- Chair of Food Engineering, Institute of Natural Materials Technology, Technische Universität Dresden, D-01062 Dresden, Germany
| | - Harald Rohm
- Chair of Food Engineering, Institute of Natural Materials Technology, Technische Universität Dresden, D-01062 Dresden, Germany
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17
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Controllable and durable release of BMP-2-loaded 3D porous sulfonated polyetheretherketone (PEEK) for osteogenic activity enhancement. Colloids Surf B Biointerfaces 2018; 171:668-674. [DOI: 10.1016/j.colsurfb.2018.08.012] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Revised: 08/02/2018] [Accepted: 08/07/2018] [Indexed: 01/07/2023]
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18
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Chen SW, Hsu JT, Chou YA, Wang HT. The application of digestive tract lactic acid bacteria with high esterase activity for zearalenone detoxification. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2018; 98:3870-3879. [PMID: 29364505 DOI: 10.1002/jsfa.8904] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 01/15/2018] [Accepted: 01/15/2018] [Indexed: 06/07/2023]
Abstract
BACKGROUND Zearalenone (ZEA) is an estrogenic mycotoxin produced by several Fusarium species and frequently contaminates cereals used for food or animal feed. This study attempted to select lactic acid bacteria (LAB) with high esterase activity from the digestive tract, with the goal of using these bacteria for ZEA detoxification. RESULTS No ZEA activity-related biotransformation products were observed in three isolates (B1, B2 and D10) during incubation in the presence of ZEA. All three LAB strains were Lactobacillus plantarum, but the API 50 CHL results suggested that the three isolates were different strains. Increased esterase activity was associated with an increase in cell growth, and the ZEA-detoxifying capabilities of isolates rely on the concentration of bacteria in the culture medium. The lipolytic activity and ZEA removal assay indicated that ZEA degradation by the supernatant fraction was dependent on esterase activity; the supernatant of B2 strain showed the highest ZEA degradation ability and did not release the binding ZEA back into the medium. The D10 strain showed fast ZEA binding ability during the late log phase but began to release the bound ZEA back into the medium after the early stationary phase. All isolates showed good acid and bile salt tolerance ability but all strains showed low adhesion ability to epithelial cells. CONCLUSION Based on the ZEA removal characterization and ability of the isolates, it is suggested that the isolates could be applied to ZEA detoxification of contaminated feed, but the with the requirement of high cell number for ZEA binding and limited degradation time before absorption of ZEA in the digestive tract. © 2018 Society of Chemical Industry.
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Affiliation(s)
- Shiau-Wei Chen
- Department of Animal Science and Technology, National Taiwan University, Taipei, Taiwan
| | - Jih-Tay Hsu
- Department of Animal Science and Technology, National Taiwan University, Taipei, Taiwan
| | - Yan-An Chou
- Department of Animal Science and Technology, National Taiwan University, Taipei, Taiwan
| | - Han-Tsung Wang
- Department of Animal Science and Technology, National Taiwan University, Taipei, Taiwan
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19
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McLay RB, Nguyen HN, Jaimes-Lizcano YA, Dewangan NK, Alexandrova S, Rodrigues DF, Cirino PC, Conrad JC. Level of Fimbriation Alters the Adhesion of Escherichia coli Bacteria to Interfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:1133-1142. [PMID: 28976770 DOI: 10.1021/acs.langmuir.7b02447] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Adhesion of bacteria to interfaces is the first step in pathogenic infection, in biofilm formation, and in bioremediation of oil spills and other pollutants. Bacteria use a variety of surface structures to promote interfacial adhesion, with the level of expression of these structures varying in response to local conditions and environmental signals. Here, we investigated how overexpression of type 1 fimbriae, one such appendage, modifies the ability of Escherichia coli to adhere to solid substrates, via biofilm formation and yeast agglomeration, and to oil/water interfaces, via a microbial adhesion to hydrocarbon assay. A plasmid that enables inducible expression of E. coli MG1655 type 1 fimbriae was transformed into fimbriae-deficient mutant strain MG1655ΔfimA. The level of fimH gene expression in the engineered strain, measured using quantitative real-time PCR, could be tuned by changing the concentration of inducer isopropyl β-d-1-thiogalactopyranoside (IPTG), and was higher than that in strain MG1655. Increasing the degree of fimbriation only slightly modified the surface energy and zeta potential of the bacteria, but enhanced their ability to agglomerate yeast cells and to adhere to solid substrates (as measured by biofilm formation) and to oil/water interfaces. We anticipate that the tunable extent of fimbriation accessible with this engineered strain can be used to investigate how adhesin expression modifies the ability of bacteria to adhere to interfaces and to actively self-assemble there.
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Affiliation(s)
- Ryan B McLay
- Department of Chemical and Biomolecular Engineering, University of Houston , Houston, Texas 77204-4004, United States
| | - Hang N Nguyen
- Department of Civil and Environmental Engineering, University of Houston , Houston, Texas 77204-4003, United States
| | - Yuly Andrea Jaimes-Lizcano
- Department of Chemical and Biomolecular Engineering, University of Houston , Houston, Texas 77204-4004, United States
| | - Narendra K Dewangan
- Department of Chemical and Biomolecular Engineering, University of Houston , Houston, Texas 77204-4004, United States
| | - Simone Alexandrova
- Department of Chemical and Biomolecular Engineering, University of Houston , Houston, Texas 77204-4004, United States
| | - Debora F Rodrigues
- Department of Civil and Environmental Engineering, University of Houston , Houston, Texas 77204-4003, United States
| | - Patrick C Cirino
- Department of Chemical and Biomolecular Engineering, University of Houston , Houston, Texas 77204-4004, United States
- Department of Biology and Biochemistry, University of Houston , Houston, Texas 77204-5008, United States
| | - Jacinta C Conrad
- Department of Chemical and Biomolecular Engineering, University of Houston , Houston, Texas 77204-4004, United States
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20
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Wong KKW, Olsson ALJ, Asadishad B, van der Bruggen B, Tufenkji N. Role of Cell Appendages in Initial Attachment and Stability of E. coli on Silica Monitored by Nondestructive TIRF Microscopy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:4066-4075. [PMID: 28368615 DOI: 10.1021/acs.langmuir.7b00314] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Total internal reflection fluorescence (TIRF) microscopy was used to investigate initial attachment and stability of wild-type, curli-deficient (ΔcsgA), flagella-deficient (ΔflhDC), and type-1 fimbriae-deficient (Δfim) mutant E. coli strains. Suspended bacteria were injected into a flow cell where they deposited on a silica coverslip, and images were acquired over a 2 min period. TIRF microscope image analysis revealed that curli- and flagella-deficient mutants attached closer to the surface and required a longer time to find their equilibrium position (i.e., bond maturation) as compared to the wild-type and fimbriae-deficient mutants. Analysis of the change in bacterial surface area over the 2 min period also indicated that curli- and flagella-deficient mutants have less initial stability than the wild-type and fimbriae-deficient mutants, evidenced by their fluctuating position at equilibrium. TIRF observations at the microscopic level were complemented macroscopically using quartz crystal microbalance with dissipation (QCM-D) and sand-packed column experiments, which support the distinctive behavior observed at the microscopic scale. For each mutant strain, as fluorescence intensity increased in TIRF, the negative frequency shift in QCM-D (related to the attached mass of bacteria) also increased. Packed-column experiments indicated that curli- and flagella-deficient mutants exhibited a characteristically different attachment behavior and more retention as compared to the wild-type and fimbriae-deficient strains. This study utilized a new approach to understand bacterial attachment/detachment and provides new insights into the role of various appendages on initial attachment and stability.
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Affiliation(s)
- Kerwin K W Wong
- Department of Chemical Engineering, McGill University , Montreal, QC, Canada
- Department of Chemical Engineering, University of Leuven , Leuven, Belgium
| | - Adam L J Olsson
- Department of Chemical Engineering, McGill University , Montreal, QC, Canada
| | - Bahareh Asadishad
- Department of Chemical Engineering, McGill University , Montreal, QC, Canada
| | - Bart van der Bruggen
- Department of Chemical Engineering, University of Leuven , Leuven, Belgium
- Faculty of Engineering and the Built Environment, Tshwane University of Technology , Pretoria, South Africa
| | - Nathalie Tufenkji
- Department of Chemical Engineering, McGill University , Montreal, QC, Canada
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21
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Cao Z, Zhang M, Zhang J, Zhang H. Impact of continuous and intermittent supply of electric assistance on high-strength 2,4-dichlorophenol (2,4-DCP) degradation in electro-microbial system. BIORESOURCE TECHNOLOGY 2016; 212:138-143. [PMID: 27092992 DOI: 10.1016/j.biortech.2016.03.165] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Revised: 03/30/2016] [Accepted: 03/31/2016] [Indexed: 06/05/2023]
Abstract
The high-strength 2,4-DCP, which exists in two states: dissolved and colloidal, was studied by a continuously electro-microbial system (CEMS) and an intermittently electro-microbial system (IEMS). The hydrolysis rate of colloidal 2,4-DCP in the IEMS without electric assistance was much higher than that in the CEMS. However, the degradation rate of the dissolved 2,4-DCP and the dissolved intermediates (2-chlorophenol and 4-chlorophenol) in the IEMS without electric assistance were much lower than that in the CEMS. By adjusting the intermittent operation mode, the degradation time of 2,4-DCP was shortened greatly. Microbial characteristics in the CEMS and the IEMS were different. The correlation analysis for the main factors affecting the hydrolysis was performed by SPSS, and it was found that the correlation coefficient (rp) was -0.912 for extracellular polymeric substances (EPS) content, 0.823 for zeta potential and 0.632 for relative hydrophobicity, respectively.
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Affiliation(s)
- Zhanping Cao
- School of Environmental and Chemical Engineering, Tianjin Polytechnic University, Tianjin 300387, China.
| | - Minghui Zhang
- School of Environmental and Chemical Engineering, Tianjin Polytechnic University, Tianjin 300387, China
| | - Jingli Zhang
- School of Environmental and Municipal Engineering, Tianjin Chengjian University, Tianjin 300384, China
| | - Hongwei Zhang
- School of Environmental and Chemical Engineering, Tianjin Polytechnic University, Tianjin 300387, China
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22
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Mitzel MR, Sand S, Whalen JK, Tufenkji N. Hydrophobicity of biofilm coatings influences the transport dynamics of polystyrene nanoparticles in biofilm-coated sand. WATER RESEARCH 2016; 92:113-120. [PMID: 26845456 DOI: 10.1016/j.watres.2016.01.026] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Revised: 01/06/2016] [Accepted: 01/12/2016] [Indexed: 06/05/2023]
Abstract
Engineered nanoparticles (ENPs) are used in the manufacture of over 2000 industrial and consumer products to enhance their material properties and functions or to enable new nanoparticle-dependent functions. The widespread use of ENPs will result in their release to the subsurface and aquatic environments, where they will interact with indigenous biota. Laboratory column experiments were designed to understand the influence of two different Pseudomonas aeruginosa biofilms on the mobility of polystyrene latex nanoparticles in granular porous media representative of groundwater aquifers or riverbank filtration settings. The transport behavior of 20 nm carboxylate-modified (CLPs) and sulfate (SLPs) polystyrene latex ENPs suspended in NaCl or CaCl2 (1 and 10 mM ionic strength, pH 7) was studied in columns packed with quartz sand coated with biofilms formed by two P. aeruginosa strains that differed in cell surface hydrophobicity (P. aeruginosa 9027™, relatively hydrophilic and P. aeruginosa PAO1, relatively hydrophobic). Biofilm-coated quartz sand retained more of the electrostatically-stabilized latex ENPs than clean, uncoated sand, regardless of the serotype. As IS increased, clear differences in the shape of the ENP breakthrough curves were observed for each type of biofilm coating. ENP breakthrough in the P. aeruginosa PAO1 biofilm-coated sand was generally constant with time whereby breakthrough in the P. aeruginosa 9027 biofilm-coated sand showed dynamic behavior. This indicates a fundamental difference in the mechanisms of ENP deposition onto hydrophilic or hydrophobic biofilm coatings due to the hydration properties of these biofilms. The results of this study demonstrate the importance of considering the surface properties of aquifer grain coatings when evaluating ENP fate in natural subsurface environments.
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Affiliation(s)
- Michael R Mitzel
- Department of Chemical Engineering, McGill University, Montreal, Quebec, H3A 0C5, Canada; Department of Natural Resource Sciences, McGill University, Montreal, Quebec, H3A 0C5, Canada
| | - Stefanie Sand
- Department of Chemical Engineering, McGill University, Montreal, Quebec, H3A 0C5, Canada; Department of Water Science, Universität Duisburg-Essen, Universitätsstr. 5, 45141, Essen, Germany
| | - Joann K Whalen
- Department of Natural Resource Sciences, McGill University, Montreal, Quebec, H3A 0C5, Canada
| | - Nathalie Tufenkji
- Department of Chemical Engineering, McGill University, Montreal, Quebec, H3A 0C5, Canada.
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23
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Lu T, Lin Z, Ren J, Yao P, Wang X, Wang Z, Zhang Q. The Non-Specific Binding of Fluorescent-Labeled MiRNAs on Cell Surface by Hydrophobic Interaction. PLoS One 2016; 11:e0149751. [PMID: 26930565 PMCID: PMC4773022 DOI: 10.1371/journal.pone.0149751] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Accepted: 02/04/2016] [Indexed: 11/18/2022] Open
Abstract
BACKGROUND MicroRNAs are small noncoding RNAs about 22 nt long that play key roles in almost all biological processes and diseases. The fluorescent labeling and lipofection are two common methods for changing the levels and locating the position of cellular miRNAs. Despite many studies about the mechanism of DNA/RNA lipofection, little is known about the characteristics, mechanisms and specificity of lipofection of fluorescent-labeled miRNAs. METHODS AND RESULTS Therefore, miRNAs labeled with different fluorescent dyes were transfected into adherent and suspension cells using lipofection reagent. Then, the non-specific binding and its mechanism were investigated by flow cytometer and laser confocal microscopy. The results showed that miRNAs labeled with Cy5 (cyanine fluorescent dye) could firmly bind to the surface of adherent cells (Hela) and suspended cells (K562) even without lipofection reagent. The binding of miRNAs labeled with FAM (carboxyl fluorescein) to K562 cells was obvious, but it was not significant in Hela cells. After lipofectamine reagent was added, most of the fluorescently labeled miRNAs binding to the surface of Hela cells were transfected into intra-cell because of the high transfection efficiency, however, most of them were still binding to the surface of K562 cells. Moreover, the high-salt buffer which could destroy the electrostatic interactions did not affect the above-mentioned non-specific binding, but the organic solvent which could destroy the hydrophobic interactions eliminated it. CONCLUSIONS These results implied that the fluorescent-labeled miRNAs could non-specifically bind to the cell surface by hydrophobic interaction. It would lead to significant errors in the estimation of transfection efficiency only according to the cellular fluorescence intensity. Therefore, other methods to evaluate the transfection efficiency and more appropriate fluorescent dyes should be used according to the cell types for the accuracy of results.
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Affiliation(s)
- Ting Lu
- Division of Endocrinology and Metabolism, Shandong Provincial Hospital affiliated to Shandong University, Jinan, China
| | - Zongwei Lin
- The Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education and Chinese Ministry of Health; The State and Shandong Province Joint Key Laboratory of Translational Cardiovascular Medicine, Qilu Hospital of Shandong University, Jinan, China
| | - Jianwei Ren
- Health Division of Guard Bureau, General Staff Department of Chinese PLA, Beijing, China
| | - Peng Yao
- Traditional Chinese Medicine Department, Jinan Firefighting Hospital, Jinan, China
| | - Xiaowei Wang
- The Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education and Chinese Ministry of Health; The State and Shandong Province Joint Key Laboratory of Translational Cardiovascular Medicine, Qilu Hospital of Shandong University, Jinan, China
| | - Zhe Wang
- Division of Endocrinology and Metabolism, Shandong Provincial Hospital affiliated to Shandong University, Jinan, China
| | - Qunye Zhang
- The Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education and Chinese Ministry of Health; The State and Shandong Province Joint Key Laboratory of Translational Cardiovascular Medicine, Qilu Hospital of Shandong University, Jinan, China
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24
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Headd B, Bradford SA. Use of aerobic spores as a surrogate for cryptosporidium oocysts in drinking water supplies. WATER RESEARCH 2016; 90:185-202. [PMID: 26734779 DOI: 10.1016/j.watres.2015.12.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Revised: 12/10/2015] [Accepted: 12/13/2015] [Indexed: 05/06/2023]
Abstract
Waterborne illnesses are a growing concern among health and regulatory agencies worldwide. The United States Environmental Protection Agency has established several rules to combat the contamination of water supplies by cryptosporidium oocysts, however, the detection and study of cryptosporidium oocysts is hampered by methodological and financial constraints. As a result, numerous surrogates for cryptosporidium oocysts have been proposed by the scientific community and efforts are underway to evaluate many of the proposed surrogates. The purpose of this review is to evaluate the suitability of aerobic bacterial spores to serve as a surrogate for cryptosporidium oocysts in identifying contaminated drinking waters. To accomplish this we present a comparison of the biology and life cycles of aerobic spores and oocysts and compare their physical properties. An analysis of their surface properties is presented along with a review of the literature in regards to the transport, survival, and prevalence of aerobic spores and oocysts in the saturated subsurface environment. Aerobic spores and oocysts share many commonalities with regard to biology and survivability, and the environmental prevalence and ease of detection make aerobic spores a promising surrogate for cryptosporidium oocysts in surface and groundwater. However, the long-term transport and release of aerobic spores still needs to be further studied, and compared with available oocyst information. In addition, the surface properties and environmental interactions of spores are known to be highly dependent on the spore taxa and purification procedures, and additional research is needed to address these issues in the context of transport.
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Affiliation(s)
- Brendan Headd
- U.S. Salinity Lab USDA, ARS, 450 W. Big Springs Road, Riverside, CA 92507-4617, USA
| | - Scott A Bradford
- U.S. Salinity Lab USDA, ARS, 450 W. Big Springs Road, Riverside, CA 92507-4617, USA.
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25
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Sakthipriya N, Doble M, Sangwai JS. Influence of thermophilic Bacillus subtilis YB7 on the biodegradation of long chain paraffinic hydrocarbons (C16H34 to C36H74). RSC Adv 2016. [DOI: 10.1039/c6ra18774a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The long chain paraffinic hydrocarbons (waxes) present in crude oil pose serious issues in the upstream oil and gas industries.
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Affiliation(s)
- N. Sakthipriya
- Flow Assurance Laboratory
- Petroleum Engineering Program
- Department of Ocean Engineering
- Indian Institute of Technology Madras
- Chennai – 600 036
| | - Mukesh Doble
- Bio Engineering Laboratory
- Department of Biotechnology
- Indian Institute of Technology Madras
- Chennai – 600 036
- India
| | - Jitendra S. Sangwai
- Flow Assurance Laboratory
- Petroleum Engineering Program
- Department of Ocean Engineering
- Indian Institute of Technology Madras
- Chennai – 600 036
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26
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Vaccari L, Allan DB, Sharifi-Mood N, Singh AR, Leheny RL, Stebe KJ. Films of bacteria at interfaces: three stages of behaviour. SOFT MATTER 2015; 11:6062-6074. [PMID: 26135879 DOI: 10.1039/c5sm00696a] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We report an investigation of the formation of films by bacteria at an oil-water interface using a combination of particle tracking and pendant drop elastometry. The films display a remarkably varied series of dynamical and mechanical properties as they evolve over the course of minutes to hours following the creation of an initially pristine interface. At the earliest stage of formation, which we interrogate using dispersions of colloidal probes, the interface is populated with motile bacteria. Interactions with the bacteria dominate the colloidal motion, and the interface displays canonical features of active matter in a quasi-two-dimensional context. This active stage gives way to a viscoelastic transition, presumably driven by the accumulation at the interface of polysaccharides and surfactants produced by the bacteria, which instill the interface with the hallmarks of soft glassy rheology that we characterize with microrheology. Eventually, the viscoelastic film becomes fully elastic with the capability to support wrinkling upon compression, and we investigate this final stage with the pendant drop measurements. We characterize quantitatively the dynamic and mechanical properties of the films during each of these three stages - active, viscoelastic, and elastic - and comment on their possible significance for the interfacial bacterial colony. This work also brings to the forefront the important role that interfacial mechanics may play in bacterial suspensions with free surfaces.
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Affiliation(s)
- Liana Vaccari
- Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA 19104, USA.
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27
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Lin CW, Wang PH, Ismail W, Tsai YW, El Nayal A, Yang CY, Yang FC, Wang CH, Chiang YR. Substrate uptake and subcellular compartmentation of anoxic cholesterol catabolism in Sterolibacterium denitrificans. J Biol Chem 2014; 290:1155-69. [PMID: 25418128 DOI: 10.1074/jbc.m114.603779] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Cholesterol catabolism by actinobacteria has been extensively studied. In contrast, the uptake and catabolism of cholesterol by Gram-negative species are poorly understood. Here, we investigated microbial cholesterol catabolism at the subcellular level. (13)C metabolomic analysis revealed that anaerobically grown Sterolibacterium denitrificans, a β-proteobacterium, adopts an oxygenase-independent pathway to degrade cholesterol. S. denitrificans cells did not produce biosurfactants upon growth on cholesterol and exhibited high cell surface hydrophobicity. Moreover, S. denitrificans did not produce extracellular catabolic enzymes to transform cholesterol. Accordingly, S. denitrificans accessed cholesterol by direction adhesion. Cholesterol is imported through the outer membrane via a putative FadL-like transport system, which is induced by neutral sterols. The outer membrane steroid transporter is able to selectively import various C27 sterols into the periplasm. S. denitrificans spheroplasts exhibited a significantly higher efficiency in cholest-4-en-3-one-26-oic acid uptake than in cholesterol uptake. We separated S. denitrificans proteins into four fractions, namely the outer membrane, periplasm, inner membrane, and cytoplasm, and we observed the individual catabolic reactions within them. Our data indicated that, in the periplasm, various periplasmic and peripheral membrane enzymes transform cholesterol into cholest-4-en-3-one-26-oic acid. The C27 acidic steroid is then transported into the cytoplasm, in which side-chain degradation and the subsequent sterane cleavage occur. This study sheds light into microbial cholesterol metabolism under anoxic conditions.
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Affiliation(s)
- Ching-Wen Lin
- From the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and
| | - Po-Hsiang Wang
- From the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and
| | - Wael Ismail
- the Life Sciences Department, Biotechnology Program, College of Graduate Studies, Arabian Gulf University, Manama 329, Kingdom of Bahrain
| | - Yu-Wen Tsai
- From the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and
| | - Ashraf El Nayal
- the Life Sciences Department, Biotechnology Program, College of Graduate Studies, Arabian Gulf University, Manama 329, Kingdom of Bahrain
| | - Chia-Ying Yang
- From the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and
| | - Fu-Chun Yang
- From the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and
| | - Chia-Hsiang Wang
- From the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and
| | - Yin-Ru Chiang
- From the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and
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28
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Kinetics of diesel degradation by an acrylamide-degrading bacterium. RENDICONTI LINCEI-SCIENZE FISICHE E NATURALI 2014. [DOI: 10.1007/s12210-014-0344-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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29
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Darvish Alipour Astaneh S, Rasooli I, Mousavi Gargari SL. The role of filamentous hemagglutinin adhesin in adherence and biofilm formation in Acinetobacter baumannii ATCC19606(T). Microb Pathog 2014; 74:42-9. [PMID: 25086432 DOI: 10.1016/j.micpath.2014.07.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2014] [Revised: 06/14/2014] [Accepted: 07/21/2014] [Indexed: 11/17/2022]
Abstract
Filamentous hemagglutinin adhesins (FHA) are key factors for bacterial attachment and subsequent cell accumulation on substrates. Here an FHA-like Outer membrane (OM) adhesin of Acinetobacter baumannii ATCC19606(T) was displayed on Escherichia coli. The candidate autotransporter (AT) genes were identified in A. baumannii ATCC19606(T) genome. The exoprotein (FhaB1) and transporter (FhaC1) were produced independently within the same cell (FhaB1C1). The fhaC1 was mutated. In vitro adherence to epithelial cells of the recombinant FhaB1C1 and the mutant strains were compared with A. baumanni ATCC19606(T). A bivalent chimeric protein (K) composed of immunologically important portions of fhaB1 (B) and fhaC1 (C) was constructed. The mice vaccinated with chimeric protein were challenged with A. baumannii ATCC19606(T) and FhaB1C1 producing recombinant E. coli. Mutations in the fhaC1 resulted in the absence of FhaB1 in the OM. Expression of FhaB1C1 enhanced the adherence of recombinant bacteria to A546 bronchial cell line. The results revealed association of FhaB1 with bacterial adhesion and biofilm formation. Immunization with a combination of recombinant B and K proteins proved protective against A. baumanni ATCC19606(T). The findings may be applied in active and passive immunization strategies against A. baumannii.
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Affiliation(s)
| | - Iraj Rasooli
- Department of Biology, Shahed University, Opposite Imam Khomeini's Shrine, Tehran-Qom Express Way, Tehran, Iran; Molecular Microbiology Research Center, Shahed University, Tehran, Iran.
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Technological characterization and probiotic traits of yeasts isolated from Altamura sourdough to select promising microorganisms as functional starter cultures for cereal-based products. Food Microbiol 2014; 38:26-35. [DOI: 10.1016/j.fm.2013.08.006] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2013] [Revised: 07/30/2013] [Accepted: 08/14/2013] [Indexed: 11/19/2022]
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Chao Y, Guo F, Fang HH, Zhang T. Hydrophobicity of diverse bacterial populations in activated sludge and biofilm revealed by microbial adhesion to hydrocarbons assay and high-throughput sequencing. Colloids Surf B Biointerfaces 2014; 114:379-85. [DOI: 10.1016/j.colsurfb.2013.10.028] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2013] [Revised: 10/17/2013] [Accepted: 10/21/2013] [Indexed: 12/01/2022]
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Asadishad B, Ghoshal S, Tufenkji N. Role of cold climate and freeze-thaw on the survival, transport, and virulence of Yersinia enterocolitica. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2013; 47:14169-14177. [PMID: 24283700 DOI: 10.1021/es403726u] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Surface and near-surface soils in cold climate regions experience low temperature and freeze-thaw (FT) conditions in the winter. Microorganisms that are of concern to groundwater quality may have the potential to survive low temperature and FT in the soil and aqueous environments. Although there is a body of literature on the survival of pathogenic bacteria at different environmental conditions, little is known about their transport behavior in aquatic environments at low temperatures and after FT. Herein, we studied the survival, transport, and virulence of a Gram-negative bacterial pathogen, Yersinia enterocolitica, when subjected to low temperature and several FT cycles at two solution ionic strengths (10 and 100 mM) in the absence of nutrients. Our findings demonstrate that this bacterium exhibited higher retention on sand after exposure to FT. Increasing the number of FT cycles resulted in higher bacterial cell surface hydrophobicity and impaired the swimming motility and viability of the bacterium. Moreover, the transcription of flhD and fliA, the flagellin-encoding genes, and lpxR, the lipid A 3'-O-deacylase gene, was reduced in low temperature and after FT treatment while the transcription of virulence factors such as ystA, responsible for enterotoxin production, ail, attachment invasion locus gene, and rfbC, O-antigen gene, was increased. Y. enterocolitica tends to persist in soil for long periods and may become more virulent at low temperature in higher ionic strength waters in cold regions.
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Affiliation(s)
- Bahareh Asadishad
- Department of Chemical Engineering, McGill University , Montreal, Quebec H3A 2B2, Canada
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Abbasnezhad H, Gray M, Foght JM. Influence of adhesion on aerobic biodegradation and bioremediation of liquid hydrocarbons. Appl Microbiol Biotechnol 2011; 92:653-75. [DOI: 10.1007/s00253-011-3589-4] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2011] [Revised: 08/27/2011] [Accepted: 09/15/2011] [Indexed: 01/14/2023]
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Bacterial adhesion to hydrocarbons: Role of asphaltenes and resins. Colloids Surf B Biointerfaces 2010; 79:219-26. [DOI: 10.1016/j.colsurfb.2010.03.054] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2010] [Revised: 03/29/2010] [Accepted: 03/31/2010] [Indexed: 11/24/2022]
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