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Fatullaev EI, Shavykin OV, Neelov IM. Molecular Dynamics of Lysine Dendrigrafts in Methanol-Water Mixtures. Int J Mol Sci 2023; 24:ijms24043063. [PMID: 36834474 PMCID: PMC9963150 DOI: 10.3390/ijms24043063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/22/2023] [Accepted: 01/27/2023] [Indexed: 02/08/2023] Open
Abstract
The molecular dynamics method was used to study the structure and properties of dendrigrafts of the first and second generations in methanol-water mixtures with various volume fractions of methanol. At a small volume fraction of methanol, the size and other properties of both dendrigrafts are very similar to those in pure water. A decrease in the dielectric constant of the mixed solvent with an increase in the methanol fraction leads to the penetration of counterions into the dendrigrafts and a reduction of the effective charge. This leads to a gradual collapse of dendrigrafts: a decrease in their size, and an increase in the internal density and the number of intramolecular hydrogen bonds inside them. At the same time, the number of solvent molecules inside the dendrigraft and the number of hydrogen bonds between the dendrigraft and the solvent decrease. At small fractions of methanol in the mixture, the dominant secondary structure in both dendrigrafts is an elongated polyproline II (PPII) helix. At intermediate volume fractions of methanol, the proportion of the PPII helix decreases, while the proportion of another elongated β-sheet secondary structure gradually increases. However, at a high fraction of methanol, the proportion of compact α-helix conformations begins to increase, while the proportion of both elongated conformations decreases.
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Affiliation(s)
- Emil I. Fatullaev
- School of Computer Technologies and Control, St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia
| | - Oleg V. Shavykin
- School of Computer Technologies and Control, St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia
- Physics Department, Lomonosov Moscow State University, Leninskie Gory 1-2, 119991 Moscow, Russia
- Department of Mathematics, Tver State University, Sadoviy per. 35, 170102 Tver, Russia
| | - Igor M. Neelov
- School of Computer Technologies and Control, St. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia
- Institute of Macromolecular Compounds of the Russian Academy of Sciences, 199004 St. Petersburg, Russia
- Correspondence:
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Altay BN, Fleming PD, Rahman MA, Pekarovicova A, Myers B, Aydemir C, Karademir A. Controlling unequal surface energy results caused by test liquids: the case of UV/O3 Treated PET. Sci Rep 2022; 12:6772. [PMID: 35474087 PMCID: PMC9043197 DOI: 10.1038/s41598-022-10816-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Accepted: 04/11/2022] [Indexed: 11/29/2022] Open
Abstract
Ultraviolet/ozone (UV/O3) treatment has been reported to be an effective method to modify properties such as wettability, adhesion or adsorption of plastic surfaces. The change in the surface is measured by contact angle analysis, which employs liquids and their surface tensions (ST) to estimate the surface energy (SE). We found two different practices in the scientific community: (1) the majority of researchers adopted the ST value of liquids from the literature, while (2) other researchers conducted real-time measurements in the lab under ambient conditions prior to SE estimation. To the best of our knowledge, there is no study that compares the difference between the two practices. One study was found to show different SE methods generating unequal SE values for the same substrate. However, there was no definitive conclusion backed by general thermodynamics rules. In this study, we presented (1) a statistical significance test that showed the literature and experimental ST values are significantly different, and studied (2) the effect of different liquid pairs on the SE estimation for UV/O3 treated poly(ethylene terephthalate) (PET) substrate. Modification techniques such as atmospheric pressure plasma or chemical modification were studied previously to examine PET’s wettability and the SE. The UV/O3 treatment was studied to improve adhesion and to modify its chemical properties for adsorption. In contrast, we studied (3) the effect of UV/O3 on wettability at different timeframes and addressed (4) how to control unequal SE based on a method that was refined on a rigorous thermodynamic three-phase system. It must be noted that this method can be generalized to other types of solid surfaces to estimate thermodynamically self-consistent SE values. This work also provides (5) a web-based calculator that complements computational findings available to the readership in the data availability section.
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Affiliation(s)
- Bilge Nazli Altay
- College of Engineering Technology, Print and Graphic Media Science, Rochester Institute of Technology, Rochester, NY, 14623-5608, USA. .,Chemical and Paper Engineering, Western Michigan University, Kalamazoo, MI, 49008-5462, USA. .,Institute of Pure and Applied Sciences, Printing Technologies, Marmara University, 34722, Istanbul, Turkey.
| | - Paul D Fleming
- Chemical and Paper Engineering, Western Michigan University, Kalamazoo, MI, 49008-5462, USA
| | - Md Arifur Rahman
- Thermoplastic Polyurethane Research, BASF Corporation, 1609 Biddle Ave., Wyandotte, MI, 48192, USA
| | - Alexandra Pekarovicova
- Chemical and Paper Engineering, Western Michigan University, Kalamazoo, MI, 49008-5462, USA
| | - Bruce Myers
- College of Engineering Technology, Print and Graphic Media Science, Rochester Institute of Technology, Rochester, NY, 14623-5608, USA
| | - Cem Aydemir
- Institute of Pure and Applied Sciences, Printing Technologies, Marmara University, 34722, Istanbul, Turkey
| | - Arif Karademir
- Faculty of Forestry, Forestry Industry Engineering, Division of Pulp and Paper, Bursa Technical University, 16310, Bursa, Turkey
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3
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Francoia JP, Vial L. Everything You Always Wanted to Know about Poly-l-lysine Dendrigrafts (But Were Afraid to Ask). Chemistry 2018; 24:2806-2814. [PMID: 29034997 DOI: 10.1002/chem.201704147] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Revised: 10/12/2017] [Indexed: 12/12/2022]
Abstract
Less than a decade ago, dendrigrafts of poly-l-lysine (DGLs) joined the family of polycationic dendritic macromolecules. Resulting from the iterative polycondensation of an N-carboxyanhydride in water, four generations of the dendrigraft can be obtained on a multigram scale and without chromatographic purification. DGLs share features with both dendrimers and hyperbranched polymers, but turned out to have unique biophysical and bioactive properties. The macromolecules-in their native form or functionalized-have been extensively characterized by various analytical and computational methods, and have already found numerous applications in the biomedical field, such as drug and gene delivery, biomaterials, tissue engineering, bioimaging, and biosensing. Despite a growing interest for DGLs, there is still plenty of room for further exciting developments that could result from a better exposure of these macromolecules, which is the ambition of this short review.
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Affiliation(s)
| | - Laurent Vial
- Institut des Biomolécules Max Mousseron, UMR 5247 CNRS-Université de Montpellier-ENSCM, Place Eugène, Bataillon, 34296, Montpellier cedex 5, France.,Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, UMR 5246 CNRS-Université Claude Bernard, Lyon 1-CPE Lyon-INSA, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne cedex, France
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Francoia JP, Rossi JC, Monard G, Vial L. Digitizing Poly-l-lysine Dendrigrafts: From Experimental Data to Molecular Dynamics Simulations. J Chem Inf Model 2017; 57:2173-2180. [PMID: 28853871 DOI: 10.1021/acs.jcim.7b00258] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Despite the growing use of poly-l-lysine dendrigrafts in biomedical applications, a deeper understanding of the molecular level properties of these macromolecules is missing. Herein, we report a simple methodology for the construction of three-dimensional structures of poly-l-lysine dendrigrafts and the subsequent investigation of their structural features using microsecond molecular dynamics simulations. This methodology relies on the encoding of the polymers' experimental characterizations (i.e., composition, degrees of polymerization, branching ratios, charges) into alphanumeric strings that are readable by the Amber simulation package. Such an original approach opens avenues toward the in silico exploration of dendrigrafts and hyperbranched polymers.
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Affiliation(s)
- Jean-Patrick Francoia
- Institut des Biomolécules Max Mousseron, UMR 5247 CNRS, Université de Montpellier, ENSCM , Place Eugéne Bataillon, 34296 Montpellier cedex 5, France
| | - Jean-Christophe Rossi
- Institut des Biomolécules Max Mousseron, UMR 5247 CNRS, Université de Montpellier, ENSCM , Place Eugéne Bataillon, 34296 Montpellier cedex 5, France
| | - Gerald Monard
- Université de Lorraine, UMR 7565 SRSMC , Boulevard des Aiguillettes B.P. 70239, F-54506 Vandoeuvre-les-Nancy, France.,CNRS, UMR 7565 SRSMC , Boulevard des Aiguillettes B.P. 70239, F-54506 Vandoeuvre-les-Nancy, France
| | - Laurent Vial
- Institut des Biomolécules Max Mousseron, UMR 5247 CNRS, Université de Montpellier, ENSCM , Place Eugéne Bataillon, 34296 Montpellier cedex 5, France.,Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, UMR 5246 CNRS, Université Claude Bernard Lyon 1, CPE Lyon, INSA , 43 Boulevard du 11 Novembre 1918, 69622 Villeurbanne cedex, France
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Ba OM, Marmey P, Anselme K, Duncan AC, Ponche A. Surface composition XPS analysis of a plasma treated polystyrene: Evolution over long storage periods. Colloids Surf B Biointerfaces 2016; 145:1-7. [DOI: 10.1016/j.colsurfb.2016.04.026] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Revised: 04/07/2016] [Accepted: 04/12/2016] [Indexed: 11/26/2022]
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Wu L, Wu S, Xu Z, Qiu Y, Li S, Xu H. Modified nanoporous titanium dioxide as a novel carrier for enzyme immobilization. Biosens Bioelectron 2016; 80:59-66. [DOI: 10.1016/j.bios.2016.01.045] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2015] [Revised: 01/05/2016] [Accepted: 01/16/2016] [Indexed: 11/25/2022]
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Khelifa F, Ershov S, Habibi Y, Snyders R, Dubois P. Free-Radical-Induced Grafting from Plasma Polymer Surfaces. Chem Rev 2016; 116:3975-4005. [PMID: 26943005 DOI: 10.1021/acs.chemrev.5b00634] [Citation(s) in RCA: 138] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
With the advances in science and engineering in the second part of the 20th century, emerging plasma-based technologies continuously find increasing applications in the domain of polymer chemistry, among others. Plasma technologies are predominantly used in two different ways: for the treatment of polymer substrates by a reactive or inert gas aiming at a specific surface functionalization or for the synthesis of a plasma polymer with a unique set of properties from an organic or mixed organic-inorganic precursor. Plasma polymer films (PPFs), often deposited by plasma-enhanced chemical vapor deposition (PECVD), currently attract a great deal of attention. Such films are widely used in various fields for the coating of solid substrates, including membranes, semiconductors, metals, textiles, and polymers, because of a combination of interesting properties such as excellent adhesion, highly cross-linked structures, and the possibility of tuning properties by simply varying the precursor and/or the synthesis parameters. Among the many appealing features of plasma-synthesized and -treated polymers, a highly reactive surface, rich in free radicals arising from deposition/treatment specifics, offers a particular advantage. When handled carefully, these reactive free radicals open doors to the controllable surface functionalization of materials without affecting their bulk properties. The goal of this review is to illustrate the increasing application of plasma-based technologies for tuning the surface properties of polymers, principally through free-radical chemistry.
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Affiliation(s)
- Farid Khelifa
- University of Mons (UMONS) , Institute of Research in Science and Engineering of Materials, Place du Parc, 23, 7000 Mons, Belgium
| | - Sergey Ershov
- University of Mons (UMONS) , Institute of Research in Science and Engineering of Materials, Place du Parc, 23, 7000 Mons, Belgium.,Materials Research and Technology Department (MRT), Luxembourg Institute of Science and Technology (LIST) , Rue du Brill 41, 4422 Belvaux, Luxembourg
| | - Youssef Habibi
- Materials Research and Technology Department (MRT), Luxembourg Institute of Science and Technology (LIST) , Rue du Brill 41, 4422 Belvaux, Luxembourg
| | - Rony Snyders
- University of Mons (UMONS) , Institute of Research in Science and Engineering of Materials, Place du Parc, 23, 7000 Mons, Belgium
| | - Philippe Dubois
- University of Mons (UMONS) , Institute of Research in Science and Engineering of Materials, Place du Parc, 23, 7000 Mons, Belgium.,Materials Research and Technology Department (MRT), Luxembourg Institute of Science and Technology (LIST) , Rue du Brill 41, 4422 Belvaux, Luxembourg
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Chamieh J, Biron JP, Cipelletti L, Cottet H. Monitoring Biopolymer Degradation by Taylor Dispersion Analysis. Biomacromolecules 2015; 16:3945-51. [DOI: 10.1021/acs.biomac.5b01260] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Joseph Chamieh
- Institut des Biomolécules
Max Mousseron (IBMM, UMR 5247 CNRS, Université de Montpellier,
Ecole Nationale Supérieure de Chimie de Montpellier), Campus Triolet, Place Eugène Bataillon,
CC 1706, 34095 Montpellier
Cedex 5, France
| | - Jean Philippe Biron
- Institut des Biomolécules
Max Mousseron (IBMM, UMR 5247 CNRS, Université de Montpellier,
Ecole Nationale Supérieure de Chimie de Montpellier), Campus Triolet, Place Eugène Bataillon,
CC 1706, 34095 Montpellier
Cedex 5, France
| | - Luca Cipelletti
- Laboratoire Charles
Coulomb (L2C), UMR 5221 CNRS, Université de Montpellier, Montpellier, F-France
| | - Hervé Cottet
- Institut des Biomolécules
Max Mousseron (IBMM, UMR 5247 CNRS, Université de Montpellier,
Ecole Nationale Supérieure de Chimie de Montpellier), Campus Triolet, Place Eugène Bataillon,
CC 1706, 34095 Montpellier
Cedex 5, France
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Shi C, He Y, Feng X, Fu D. ε-Polylysine and next-generation dendrigraft poly-L-lysine: chemistry, activity, and applications in biopharmaceuticals. JOURNAL OF BIOMATERIALS SCIENCE-POLYMER EDITION 2015; 26:1343-56. [DOI: 10.1080/09205063.2015.1095023] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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10
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Das A, Theato P. Activated Ester Containing Polymers: Opportunities and Challenges for the Design of Functional Macromolecules. Chem Rev 2015; 116:1434-95. [DOI: 10.1021/acs.chemrev.5b00291] [Citation(s) in RCA: 285] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Anindita Das
- Institute
for Technical and
Macromolecular Chemistry, University of Hamburg, D-20146 Hamburg, Germany
| | - Patrick Theato
- Institute
for Technical and
Macromolecular Chemistry, University of Hamburg, D-20146 Hamburg, Germany
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