Enhancing aerobic biodegradation of 1,2-dibromoethane in groundwater using ethane or propane and inorganic nutrients

Acetylene Tunes Microbial Growth During Aerobic Cometabolism of Trichloroethene

Microbial aerobic cometabolism is a possible treatment approach for large, dilute trichloroethene (TCE) plumes at groundwater contaminated sites. Rapid microbial growth and bioclogging pose a persistent problem in bioremediation schemes. Bioclogging reduces soil porosity and permeability, which negatively affects substrate distribution and contaminant treatment efficacy while also increasing the operation and maintenance costs of bioremediation. In this study, we evaluated the ability of acetylene, an oxygenase enzyme-specific inhibitor, to decrease biomass production while maintaining aerobic TCE cometabolism capacity upon removal of acetylene. We first exposed propane-metabolizing cultures (pure and mixed) to 5% acetylene (v v-1) for 1, 2, 4, and 8 d and we then verified TCE aerobic cometabolic activity. Exposure to acetylene overall decreased biomass production and TCE degradation rates while retaining the TCE degradation capacity. In the mixed culture, exposure to acetylene for 1-8 d showed minimal effects on the composition and relative abundance of TCE cometabolizing bacterial taxa. TCE aerobic cometabolism and incubation conditions exerted more notable effects on microbial ecology than did acetylene. Acetylene appears to be a viable approach to control biomass production that may lessen the likelihood of bioclogging during TCE cometabolism. The findings from this study may lead to advancements in aerobic cometabolism remediation technologies for dilute plumes.

Dual C-Br Isotope Fractionation Indicates Distinct Reductive Dehalogenation Mechanisms of 1,2-Dibromoethane in Dehalococcoides- and Dehalogenimonas-Containing Cultures

Brominated organic compounds such as 1,2-dibromoethane (1,2-DBA) are highly toxic groundwater contaminants. Multi-element compound-specific isotope analysis bears the potential to elucidate the biodegradation pathways of 1,2-DBA in the environment, which is crucial information to assess its fate in contaminated sites. This study investigates for the first time dual C-Br isotope fractionation during in vivo biodegradation of 1,2-DBA by two anaerobic enrichment cultures containing organohalide-respiring bacteria (i.e., either Dehalococcoides or Dehalogenimonas). Different ε_bulk^C values (-1.8 ± 0.2 and -19.2 ± 3.5‰, respectively) were obtained, whereas their respective ε_bulk^Br values were lower and similar to each other (-1.22 ± 0.08 and -1.2 ± 0.5‰), leading to distinctly different trends (Λ_C-Br = Δδ¹³C/Δδ⁸¹Br ≈ ε_bulk^C/ε_bulk^Br) in a dual C-Br isotope plot (1.4 ± 0.2 and 12 ± 4, respectively). These results suggest the occurrence of different underlying reaction mechanisms during enzymatic 1,2-DBA transformation, that is, concerted dihaloelimination and nucleophilic substitution (S_N2-reaction). The strongly pathway-dependent Λ_C-Br values illustrate the potential of this approach to elucidate the reaction mechanism of 1,2-DBA in the field and to select appropriate ε_bulk^C values for quantification of biodegradation. The results of this study provide valuable information for future biodegradation studies of 1,2-DBA in contaminated sites.

Draft Genome Sequences of Four Aerobic Isobutane-Metabolizing Bacteria

Here, we report the draft genome sequences of four aerobic gaseous alkane-oxidizing bacteria isolated from soil by enrichment culture using isobutane (2-methylpropane) as the sole carbon and energy source. The sequences all reveal microorganisms with multiple alkane-oxidizing monooxygenases, including soluble di-iron monooxygenases (SDIMOs), copper-containing monooxygenases (CuMMOs), and alkane hydroxylases (AHs).

Here, we report the draft genome sequences of four aerobic gaseous alkane-oxidizing bacteria isolated from soil by enrichment culture using isobutane (2-methylpropane) as the sole carbon and energy source. The sequences all reveal microorganisms with multiple alkane-oxidizing monooxygenases, including soluble di-iron monooxygenases (SDIMOs), copper-containing monooxygenases (CuMMOs), and alkane hydroxylases (AHs).

Profiling microbial community structures and functions in bioremediation strategies for treating 1,4-dioxane-contaminated groundwater

Microbial community compositions and functional profiles were analyzed in microcosms established using aquifer materials from a former automobile factory site, where 1,4-dioxane was identified as the primary contaminant of concern. Propane or oxygen biostimulation resulted in limited 1,4-dioxane degradation, which was markedly enhanced with the addition of nutrients, resulting in abundant Mycobacterium and Methyloversatilis taxa and high expressions of propane monooxygenase gene, prmA. In bioaugmented treatments, Pseudonocardia dioxanivorans CB1190 or Rhodococcus ruber ENV425 strains dominated immediately after augmentation and degraded 1,4-dioxane rapidly which was consistent with increased representation of xenobiotic and lipid metabolism-related functions. Although the bioaugmented microbes decreased due to insufficient growth substrates and microbial competition, they did continue to degrade 1,4-dioxane, presumably by indigenous propanotrophic and heterotrophic bacteria, inducing similar community structures across bioaugmentation conditions. In various treatments, functional redundancy acted as buffer capacity to ensure a stable microbiome, drove the restoration of the structure and microbial functions to original levels, and induced the decoupling between basic metabolic functions and taxonomy. The results of this study provided valuable information for design and decision-making for ex-situ bioreactors and in-situ bioremediation applications. A metagenomics-based understanding of the treatment process will enable efficient and accurate adjustments when encountering unexpected issues in bioremediation.

Effects of two surfactants on microbial diversity of a PCE-degrading microbial consortium

The effects of two representative surfactants, Rhamnolipids and Tween 80, on the microbial diversity of a PCE-degrading consortium during surfactant-enhanced biodegradation, were explored. The biodegradation efficiency was increased from 47.25% to 73.44%, and 47.25%-66.69%, with the addition of Rhamnolipid at 10 mg/L and Tween 80 at 50 mg/L, respectively. PCE biodegradation kinetics can be described by the pseudo-first-order reaction model for both scenarios. Analyses of alpha and beta indices of the microbial consortium showed that the microbial diversity of both groups exposed to either surfactant was not significantly different from the PCE only group. However, the bacterial abundance in the consortium changed significantly at both the phylum and genus levels. The results demonstrated that the composition of the PCE-degrading consortium is relatively stable, but the exposure to both surfactants results in the enrichment of some genera, which could contribute to the increased biodegradation efficiency.

Enhanced removal of tetrachloroethylene from aqueous solutions by biodegradation coupled with nZVI modified by layered double hydroxide

Chlorinated volatile organic compounds, such as tetrachloroethylene (PCE), are the most commonly detected toxic contaminants in groundwater. In this study, the performance of PCE removal by a microbial consortium combined with nZVI modified by layered double hydroxide (nZVI-LDH) was evaluated. The enriched PCE-degrading consortium consisted of 44.49% Clostridium and other potential PCE degraders, and 0.5-2.5 mg/L PCE was completely biodegraded within 4 days. The characterization of nZVI-LDH indicated that LDH was coated on the surfaces of nZVI particles with an increased surface area. The PCE removal kinetics by nZVI-LDH was well described by a second-order model, and the removal rate constant of nZVI-LDH was 0.12 L h/mg, higher than that of native nZVI (0.02 L h/mg). Interestingly, the presence of Cu²⁺ improved the removal efficiency of PCE by nZVI-LDH, owing to its role as a catalyst or medium for charge transfer during reduction. Removal of PCE was enhanced by coupling the PCE-degrading consortium and nZVI-LDH. The initial removal of PCE was mainly dominated by the abiotic degradation and adsorption of nZVI-LDH, and biodegradation then played a major role in the exhaustion of nZVI-LDH. These results suggest that biodegradation coupled with nZVI-LDH has a great potential for applications in the remediation of chlorinated-solvent contaminated groundwater.

Field demonstration of N-Nitrosodimethylamine (NDMA) treatment in groundwater using propane biosparging

N-Nitrosodimethylamine (NDMA) is found in groundwater and drinking water from industrial, agricultural, water treatment, and military/aerospace sources, and it must often be treated to part-per-trillion (ng/L) concentrations. The most effective remedial technology for NDMA in groundwater is pump-and-treat with ultraviolet irradiation (UV), but this approach is expensive because it requires ex situ infrastructure and high energy input. The objective of this project was to evaluate an in situ biological treatment approach for NDMA. Previous laboratory studies have revealed that propane-oxidizing bacteria are capable of biodegrading NDMA from μg/L to low ng/L concentrations (Fournier et al., 2009; Webster et al., 2013). During this field study, air and propane gas were sparged into an NDMA-contaminated aquifer for more than 1 year. Groundwater samples were collected throughout the study from a series of monitoring wells within, downgradient, and sidegradient of the zone of influence of the biosparge system. Over the course of the study, NDMA concentrations declined by 99.7% to >99.9% in the four monitoring wells within the zone of influence of the biosparge system, reaching low ng/L concentrations whereas the control well declined by only 14%. Pseudo first-order degradation rate constants for NDMA in system monitoring wells ranged from ∼0.019 day ^-1 to 0.037 day ^-1 equating to half-lives ranging from 19 to 36 days. Native propanotrophs increased by more than one order of magnitude in the propane-impacted wells but not in the control well. The field data show for the first time that propane biosparging can be an effective in situ approach to reduce the concentrations of NDMA in a groundwater to ng/L concentrations.

Aerobic and Anaerobic Biodegradation of 1,2-Dibromoethane by a Microbial Consortium under Simulated Groundwater Conditions

This study was conducted to explore the potential for 1,2-Dibromoethane (EDB) biodegradation by an acclimated microbial consortium under simulated dynamic groundwater conditions. The enriched EDB-degrading consortium consisted of anaerobic bacteria Desulfovibrio, facultative anaerobe Chromobacterium, and other potential EDB degraders. The results showed that the biodegradation efficiency of EDB was more than 61% at 15 °C, and the EDB biodegradation can be best described by the apparent pseudo-first-order kinetics. EDB biodegradation occurred at a relatively broad range of initial dissolved oxygen (DO) from 1.2 to 5.1 mg/L, indicating that the microbial consortium had a strong ability to adapt. The addition of 40 mg/L of rhamnolipid and 0.3 mM of sodium lactate increased the biodegradation. A two-phase biodegradation scheme was proposed for the EDB biodegradation in this study: an aerobic biodegradation to carbon dioxide and an anaerobic biodegradation via a two-electron transfer pathway of dihaloelimination. To our knowledge, this is the first study that reported EDB biodegradation by an acclimated consortium under both aerobic and anaerobic conditions, a dynamic DO condition often encountered during enhanced biodegradation of EDB in the field.

In situ bioremediation of 1,2-dibromoethane (EDB) in groundwater to part-per-trillion concentrations using cometabolism

1,2-Dibromoethane (ethylene dibromide; EDB) is a probable human carcinogen that was historically added to leaded gasoline as a scavenger to prevent the build-up of lead oxide deposits in engines. Studies indicate that EDB is present at thousands of past fuel spill sites above its stringent EPA Maximum Contaminant Level (MCL) of 0.05 μg/L. There are currently no proven in situ options to enhance EDB degradation in groundwater to meet this requirement. Based on successful laboratory studies showing that ethane can be used as a primary substrate to stimulate the aerobic, cometabolic biodegradation of EDB to <0.015 μg/L (Hatzinger et al., 2015), a groundwater recirculation system was installed at the FS-12 EDB plume on Joint Base Cape Cod (JBCC), MA to facilitate in situ treatment. Groundwater was taken from an existing extraction well, amended with ethane, oxygen, and inorganic nutrients and then recharged into the aquifer upgradient of the extraction well creating an in situ reactive zone. The concentrations of EDB, ethane, oxygen, and anions in groundwater were measured with time in a series of nested monitoring wells installed between the extraction and injection well. EDB concentrations in the six monitoring wells that were hydraulically well-connected to the pumping system declined from ~ 0.3 μg/L (the average concentration in the recirculation cell after 3 months of operation without amendment addition) to <0.02 μg/L during the 4-month amendment period, meeting both the federal MCL and the more stringent Massachusetts MCL (0.02 μg/L). The data indicate that cometabolic treatment is a promising in situ technology for EDB, and that low regulatory levels can be achieved with this biological approach.

Potential for cometabolic biodegradation of 1,4-dioxane in aquifers with methane or ethane as primary substrates

The objective of this research was to evaluate the potential for two gases, methane and ethane, to stimulate the biological degradation of 1,4-dioxane (1,4-D) in groundwater aquifers via aerobic cometabolism. Experiments with aquifer microcosms, enrichment cultures from aquifers, mesophilic pure cultures, and purified enzyme (soluble methane monooxygenase; sMMO) were conducted. During an aquifer microcosm study, ethane was observed to stimulate the aerobic biodegradation of 1,4-D. An ethane-oxidizing enrichment culture from these samples, and a pure culture capable of growing on ethane (Mycobacterium sphagni ENV482) that was isolated from a different aquifer also biodegraded 1,4-D. Unlike ethane, methane was not observed to appreciably stimulate the biodegradation of 1,4-D in aquifer microcosms or in methane-oxidizing mixed cultures enriched from two different aquifers. Three different pure cultures of mesophilic methanotrophs also did not degrade 1,4-D, although each rapidly oxidized 1,1,2-trichloroethene (TCE). Subsequent studies showed that 1,4-D is not a substrate for purified sMMO enzyme from Methylosinus trichosporium OB3b, at least not at the concentrations evaluated, which significantly exceeded those typically observed at contaminated sites. Thus, our data indicate that ethane, which is a common daughter product of the biotic or abiotic reductive dechlorination of chlorinated ethanes and ethenes, may serve as a substrate to enhance 1,4-D degradation in aquifers, particularly in zones where these products mix with aerobic groundwater. It may also be possible to stimulate 1,4-D biodegradation in an aerobic aquifer through addition of ethane gas. Conversely, our results suggest that methane may have limited importance in natural attenuation or for enhancing biodegradation of 1,4-D in groundwater environments.

Dual Carbon-Bromine Stable Isotope Analysis Allows Distinguishing Transformation Pathways of Ethylene Dibromide

The present study investigated dual carbon-bromine isotope fractionation of the common groundwater contaminant ethylene dibromide (EDB) during chemical and biological transformations, including aerobic and anaerobic biodegradation, alkaline hydrolysis, Fenton-like degradation, debromination by Zn(0) and reduced corrinoids. Significantly different correlation of carbon and bromine isotope fractionation (ΛC/Br) was observed not only for the processes following different transformation pathways, but also for abiotic and biotic processes with, the presumed, same formal chemical degradation mechanism. The studied processes resulted in a wide range of ΛC/Br values: ΛC/Br = 30.1 was observed for hydrolysis of EDB in alkaline solution; ΛC/Br between 4.2 and 5.3 were determined for dibromoelimination pathway with reduced corrinoids and Zn(0) particles; EDB biodegradation by Ancylobacter aquaticus and Sulfurospirillum multivorans resulted in ΛC/Br = 10.7 and 2.4, respectively; Fenton-like degradation resulted in carbon isotope fractionation only, leading to ΛC/Br ∞. Calculated carbon apparent kinetic isotope effects ((13)C-AKIE) fell with 1.005 to 1.035 within expected ranges according to the theoretical KIE, however, biotic transformations resulted in weaker carbon isotope effects than respective abiotic transformations. Relatively large bromine isotope effects with (81)Br-AKIE of 1.0012-1.002 and 1.0021-1.004 were observed for nucleophilic substitution and dibromoelimination, respectively, and reveal so far underestimated strong bromine isotope effects.

Cometabolic degradation of lincomycin in a Sequencing Batch Biofilm Reactor (SBBR) and its microbial community

Cometabolism technology was employed to degrade lincomycin wastewater in Sequencing Batch Biofilm Reactor (SBBR). In contrast with the control group, the average removal rate of lincomycin increased by 56.0% and Total Organic Carbon (TOC) increased by 52.5% in the cometabolic system with glucose as growth substrate. Under the same condition, Oxidation-Reduction Potential (ORP) was 85.1±7.3mV in cometabolic system and 198.2±8.4mV in the control group, indicating that glucose changed the bulk ORP and created an appropriate growing environment for function bacteria. Functional groups of lincomycin were effectively degraded in cometabolic system proved by FTIR and GC-MS. Meanwhile, results of DGGE and 16S rDNA showed great difference in dominant populations between cometabolic system and the control group. In cometabolic system, Roseovarius (3.35%), Thiothrix (2.74%), Halomonas (2.49%), Ignavibacterium (2.02%), and TM7_genus_incertae_sedis (1.93%) were verified as dominant populations at genus level. Cometabolism may be synergistically caused by different functional dominant bacteria.