Molecular systematics of the genus Necromys (Rodentia: Cricetidae: Sigmodontinae) reveals two cryptic and syntopic species in western Cerrado of Brazil

Geoclimatic drivers of diversification in the largest arid and semi-arid environment of the Neotropics: Perspectives from phylogeography

The South American Dry Diagonal, also called the Diagonal of Open Formations, is a large region of seasonally dry vegetation extending from northeastern Brazil to northern Argentina, comprising the Caatinga, Cerrado, and Chaco subregions. A growing body of phylogeography literature has determined that a complex history of climatic changes coupled with more ancient geological events has produced a diverse and endemic-rich Dry Diagonal biota. However, the exact drivers are still under investigation, and their relative strengths and effects are controversial. Pleistocene climatic fluctuations structured lineages via vegetation shifts, refugium formation, and corridors between the Amazon and Atlantic forests. In some taxa, older geological events, such as the reconfiguration of the São Francisco River, uplift of the Central Brazilian Plateau, or the Miocene inundation of the Chaco by marine incursions, were more important. Here, we review the Dry Diagonal phylogeography literature, discussing each hypothesized driver of diversification and assessing degree of support. Few studies statistically test these hypotheses, with most support drawn from associating encountered phylogeographic patterns such as population structure with the timing of ancient geoclimatic events. Across statistical studies, most hypotheses are well supported, with the exception of the Pleistocene Arc Hypothesis. However, taxonomic and regional biases persist, such as a proportional overabundance of herpetofauna studies, and the under-representation of Chaco studies. Overall, both Pleistocene climate change and Neogene geological events shaped the evolution of the Dry Diagonal biota, though the precise effects are regionally and taxonomically varied. We encourage further use of model-based analyses to test evolutionary scenarios, as well as interdisciplinary collaborations to progress the field beyond its current focus on the traditional set of geoclimatic hypotheses.

Chromosomal rearrangements played an important role in the speciation of rice rats of genus Cerradomys (Rodentia, Sigmodontinae, Oryzomyini)

Rodents of the genus Cerradomys belong to tribe Oryzomyini, one of the most diverse and speciose groups in Sigmodontinae (Rodentia, Cricetidae). The speciation process in Cerradomys is associated with chromosomal rearrangements and biogeographic dynamics in South America during the Pleistocene era. As the morphological, molecular and karyotypic aspects of Myomorpha rodents do not evolve at the same rate, we strategically employed karyotypic characters for the construction of chromosomal phylogeny to investigate whether phylogenetic relationships using chromosomal data corroborate the radiation of Cerradomys taxa recovered by molecular phylogeny. Comparative chromosome painting using Hylaeamys megacephalus (HME) whole chromosome probes in C. langguthi (CLA), Cerradomys scotii (CSC), C. subflavus (CSU) and C. vivoi (CVI) shows that karyotypic variability is due to 16 fusion events, 2 fission events, 10 pericentric inversions and 1 centromeric repositioning, plus amplification of constitutive heterochromatin in the short arms of the X chromosomes of CSC and CLA. The chromosomal phylogeny obtained by Maximum Parsimony analysis retrieved Cerradomys as a monophyletic group with 97% support (bootstrap), with CSC as the sister to the other species, followed by a ramification into two clades (69% of branch support), the first comprising CLA and the other branch including CVI and CSU. We integrated the chromosome painting analysis of Eumuroida rodents investigated by HME and Mus musculus (MMU) probes and identified several syntenic blocks shared among representatives of Cricetidae and Muridae. The Cerradomys genus underwent an extensive karyotypic evolutionary process, with multiple rearrangements that shaped extant karyotypes. The chromosomal phylogeny corroborates the phylogenetic relationships proposed by molecular analysis and indicates that karyotypic diversity is associated with species radiation. Three syntenic blocks were identified as part of the ancestral Eumuroida karyotype (AEK): MMU 7/19 (AEK 1), MMU 14 (AEK 10) and MMU 12 (AEK 11). Besides, MMU 5/10 (HME 18/2/24) and MMU 8/13 (HME 22/5/11) should be considered as signatures for Cricetidae, while MMU 5/9/14, 5/7/19, 5 and 8/17 for Sigmodontinae.

New data on the recently described Brazilian Cerrado hotspot endemic Cerradomys akroai Bonvicino, Casado et Weksler, 2014 (Rodentia: Cricetidae)

Cerradomys akroai is a recently described rodent species, known from two localities in the Brazilian Cerrado, in southeastern Tocantins state (type locality), and in southwestern Piauí state. Herein we add a third locality recorded from a specimen collected in central Tocantins state, in a “cerrado sensu stricto” habitat. Morphological and molecular analyses confirm the identification. The three localities now known for the species are restricted to northern Cerrado domain, and two are located in sites severely impacted by anthropogenic activities. Current conservation category of Cerradomys akroai is Data Deficient, and additional information on its distribution and biology is required.

Winners and Losers: How Woody Encroachment Is Changing the Small Mammal Community Structure in a Neotropical Savanna

Years of fire suppression, decreases in herbivores, and global climate change have led to shifts in savannas worldwide. Natural open vegetation such as grasslands and shrublands is increasing in wood density, but the effects for small mammals are not well understood. While most of the mammal studies from the Brazilian Cerrado are concentrated in the core area of this large Neotropical savanna, its southern portions are suffering from biome shifting through woody encroachment. Herein, we surveyed a small mammal community from the southeastern boundary of Cerrado (Santa Bárbara Ecological Station) and evaluated the micro and macro environmental variables shaping community structure in order to investigate how the woody encroachment in the last 15 years may have influenced this assemblage. We recorded 17 species of marsupials and rodents along five distinct habitats in a gradient from grasslands to woodlands. Although richness was not affected by microhabitat variables, total and relative abundance varied according to habitat type and in relation to herbaceous, shrub, and tree density. Rodents such as Calomys tener and Clyomys laticeps were positively affected by increasing herb cover, Cerradomys scotti and Oligoryzomys nigripes by shrub cover, while the marsupial Didelphis albiventris had higher association with increasing tree cover. We detected an increase of 27.4% in vegetation density (EVI) between 2003 and 2018 in our study site, and this woody encroachment negatively affected the abundance of some small mammals. The open-area specialists Cryptonanus chacoensis and C. scotti had a decrease in abundance, while D. albiventris and O. nigripes were favored by woody encroachment. Our data suggest that woody encroachment is shifting community composition: small mammals often associated with grasslands and open savannas are likely to be negatively affected by woody encroachment; while species that rely on tree-covered habitats are likely to benefit from an increasing woody landscape. Therefore, forest-dwellers are gradually replacing open-vegetation inhabitants. Active management of open formations (e.g., with prescribed burning) may be needed to maintain Cerrado biodiversity, especially considering the open-area endemics.