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Pishbin E, Sadri F, Dehghan A, Kiani MJ, Hashemi N, Zare I, Mousavi P, Rahi A. Recent advances in isolation and detection of exosomal microRNAs related to Alzheimer's disease. ENVIRONMENTAL RESEARCH 2023; 227:115705. [PMID: 36958383 DOI: 10.1016/j.envres.2023.115705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Revised: 03/11/2023] [Accepted: 03/15/2023] [Indexed: 05/08/2023]
Abstract
Alzheimer's disease, a progressive neurological condition, is associated with various internal and external risk factors in the disease's early stages. Early diagnosis of Alzheimer's disease is essential for treatment management. Circulating exosomal microRNAs could be a new class of valuable biomarkers for early Alzheimer's disease diagnosis. Different kinds of biosensors have been introduced in recent years for the detection of these valuable biomarkers. Isolation of the exosomes is a crucial step in the detection process which is traditionally carried out by multi-step ultrafiltration. Microfluidics has improved the efficiency and costs of exosome isolation by implementing various effects and forces on the nano and microparticles in the microchannels. This paper reviews recent advancements in detecting Alzheimer's disease related exosomal microRNAs based on methods such as electrochemical, fluorescent, and SPR. The presented devices' pros and cons and their efficiencies compared with the gold standard methods are reported. Moreover, the application of microfluidic devices to detect Alzheimer's disease related biomarkers is summarized and presented. Finally, some challenges with the performance of novel technologies for isolating and detecting exosomal microRNAs are addressed.
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Affiliation(s)
- Esmail Pishbin
- Bio-microfluidics Laboratory, Department of Electrical Engineering and Information Technology, Iranian Research Organization for Science and Technology, Tehran, Iran
| | - Fatemeh Sadri
- Department of Medical Genetics, Faculty of Medicine, Hormozgan University of Medical Sciences, Bandar Abbas, Iran
| | - Amin Dehghan
- School of Mechanical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Mohammad Javad Kiani
- School of Mechanical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Nader Hashemi
- Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Iman Zare
- Research and Development Department, Sina Medical Biochemistry Technologies Co. Ltd., Shiraz 7178795844, Iran
| | - Pegah Mousavi
- Molecular Medicine Research Center, Hormozgan Health Institute, Hormozgan University of Medical Sciences, Bandar Abbas, Iran.
| | - Amid Rahi
- Cell Therapy and Regenerative Medicine Comprehensive Center, Kerman University of Medical Sciences, Kerman, Iran.
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Choi HK, Yoon J. Nanotechnology-Assisted Biosensors for the Detection of Viral Nucleic Acids: An Overview. BIOSENSORS 2023; 13:208. [PMID: 36831973 PMCID: PMC9953881 DOI: 10.3390/bios13020208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 01/21/2023] [Accepted: 01/28/2023] [Indexed: 06/18/2023]
Abstract
The accurate and rapid diagnosis of viral diseases has garnered increasing attention in the field of biosensors. The development of highly sensitive, selective, and accessible biosensors is crucial for early disease detection and preventing mortality. However, developing biosensors optimized for viral disease diagnosis has several limitations, including the accurate detection of mutations. For decades, nanotechnology has been applied in numerous biological fields such as biosensors, bioelectronics, and regenerative medicine. Nanotechnology offers a promising strategy to address the current limitations of conventional viral nucleic acid-based biosensors. The implementation of nanotechnologies, such as functional nanomaterials, nanoplatform-fabrication techniques, and surface nanoengineering, to biosensors has not only improved the performance of biosensors but has also expanded the range of sensing targets. Therefore, a deep understanding of the combination of nanotechnologies and biosensors is required to prepare for sanitary emergencies such as the recent COVID-19 pandemic. In this review, we provide interdisciplinary information on nanotechnology-assisted biosensors. First, representative nanotechnologies for biosensors are discussed, after which this review summarizes various nanotechnology-assisted viral nucleic acid biosensors. Therefore, we expect that this review will provide a valuable basis for the development of novel viral nucleic acid biosensors.
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Affiliation(s)
- Hye Kyu Choi
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Jinho Yoon
- Department of Biomedical-Chemical Engineering, The Catholic University of Korea, Bucheon-si 14662, Gyeonggi-do, Republic of Korea
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Yildiz E, Yurdacan B, Erac Y, Erdem A. Diagnostic kit based on halloysite nanoclay-ionic liquid nanocomposite modified electrode for electrochemical determination of cancer biomarker. Talanta 2023; 252:123854. [PMID: 36029681 DOI: 10.1016/j.talanta.2022.123854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 08/12/2022] [Accepted: 08/16/2022] [Indexed: 12/29/2022]
Abstract
Nucleic acid hybridization is occurred between the selective single-stranded nucleic acid sequence and its target sequence, which is one of the essential procedure for electrochemical detection of nucleic acid. microRNA-21 (miRNA-21) is known as a biomarker in various cancers. The determination of miRNA-21 was attained through by hybridization of inosine substituted miRNA-21 specific DNA probe (Pinosine) with its target miRNA-21. In this study, the surface of pencil graphite electrode (PGE) was firstly modified with halloysite nanoclay-ionic liquid (HNT/IL) nanocomposite. The characterization of surface was performed by Scanning Electron Microscope (SEM) images and Energy Dispersive X-Ray Analysis (EDX) analysis, and the differences at surface modifications were also shown by electrochemical methods with electrochemical impedance spectroscopy (EIS) and cyclic voltammetry (CV). For sensitive and selective determination of miRNA-21, Pinosine and target miRNA concentration, immobilization and hybridization time were optimized by using HNT/IL modified PGE in combination with differential pulse voltammetry (DPV). The detection limit was achieved as 0.17 μg/mL (equals to 23.69 nM) in the linear range of 0.25-2 μg/mL miRNA-21. The selectivity of voltammetric method based on HNT/IL-PGE developed for miRNA-21 was examined in the presence of mismatch (MM) and non-complementary (NC) sequences. Because miRNA-21 is over-expressed in cancer cells, it has been tested in total RNA samples isolated from cancer cell line (breast cancer cell line, MCF-7). In the total RNA samples obtained from MCF-7, the detection limit was calculated as 0.28 μg/mL in the linear range of 1-4 μg/mL. Besides, the healthy cell line (human embryonic kidney cell line, HEK-293) was used as a control group and the results obtained by MCF-7 total RNA samples were compared to the results using HEK-293 total RNA samples in terms of miRNA-21 level.
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Affiliation(s)
- Esma Yildiz
- The Institute of Natural and Applied Sciences, Biomedical Technologies Department, Ege University, Bornova, 35100, Izmir, Turkey; Faculty of Pharmacy, Analytical Chemistry Department, Ege University, Bornova, 35100, Izmir, Turkey
| | - Beste Yurdacan
- Faculty of Pharmacy, Department of Pharmacology, Ege University, Bornova, 35100, Izmir, Turkey
| | - Yasemin Erac
- Faculty of Pharmacy, Department of Pharmacology, Ege University, Bornova, 35100, Izmir, Turkey
| | - Arzum Erdem
- The Institute of Natural and Applied Sciences, Biomedical Technologies Department, Ege University, Bornova, 35100, Izmir, Turkey; Faculty of Pharmacy, Analytical Chemistry Department, Ege University, Bornova, 35100, Izmir, Turkey.
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4
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Azimi Sanavi M, Mahdavian F, Dorosti N, Karami N, Karami S, Khatami SH, Vakili O, Taheri-Anganeh M, Karima S, Movahedpour A. A review of highly sensitive electrochemical genosensors for microRNA detection: A novel diagnostic platform for neurodegenerative diseases diagnostics. Biotechnol Appl Biochem 2022. [PMID: 36445196 DOI: 10.1002/bab.2419] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Accepted: 10/03/2022] [Indexed: 12/02/2022]
Abstract
The significant role of microRNAs in regulating gene expression and in disease tracking has handed the possibility of robust and accurate diagnosis of various diseases. Measurement of these biomarkers has also had a significant impact on the preparation of natural samples. Discovery of miRNAs is a major challenge due to their small size in the real sample and their short length, which is generally measured by complex and expensive methods. Electrochemical nanobiosensors have made significant progress in this field. Due to the delicate nature of nerve tissue repair and the significance of rapid-fire feature of neurodegenerative conditions, these biosensors can be reliably promising. This review presents advances in the field of neurodegenerative diseases diagnostics. At the same time, there are still numerous openings in this field that are a bright prospect for researchers in the rapid-fire opinion of neurological diseases and indeed nerve tissue repair.
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Affiliation(s)
- Mehrnoosh Azimi Sanavi
- Department of Biochemistry and Genetics, Molecular and Cell Biology Research Center, Faculty of Medicine, Mazandaran University of Medical Sciences, Sari, Iran
| | - Farzaneh Mahdavian
- Department of Medical Biotechnology, Faculty of Advanced Technologies in Medicine, Mazandaran University of Medical Sciences, Sari, Iran
| | - Nafiseh Dorosti
- Department of Medical Nanotechnology, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Sari, Iran
| | - Neda Karami
- TU Wien, Institute of Solid State Electronics, Vienna, Austria
| | - Sajedeh Karami
- Department of Chemistry, Shiraz University, Shiraz, Iran
| | - Seyyed Hossein Khatami
- Department of Clinical Biochemistry, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Omid Vakili
- Department of Clinical Biochemistry, School of Pharmacy and Pharmaceutical Sciences, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Mortaza Taheri-Anganeh
- Cellular and Molecular Research Center, Cellular and Molecular Medicine Institute, Urmia University of Medical Sciences, Urmia, Iran
| | - Saeed Karima
- Department of Clinical Biochemistry, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
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Abdul Aziz SFN, Salleh AB, Ashari SE, Normi YM, Yusof NA, Alang Ahmad SA. Designed Mini Protein 20 Mimicking Uricase Encapsulated in ZIF-8 as Nanozyme Biosensor for Uric Acid Detection. NANOMATERIALS 2022; 12:nano12132290. [PMID: 35808126 PMCID: PMC9267977 DOI: 10.3390/nano12132290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 06/26/2022] [Accepted: 06/27/2022] [Indexed: 02/01/2023]
Abstract
This work presents the use of encapsulated mini protein 20 mimicking uricase (mp20)-zeolitic imidazolate framework-8 (ZIF-8) as a bioreceptor for the development of a nanozyme-based electrochemical biosensor for uric acid detection. The electrochemical performance of the biofunctionalized mp20@ZIF-8 on the reduced graphene oxide/screen-printed carbon electrode (rGO/SPCE) was investigated by optimizing operating parameters such as pH, deposition potential, and deposition time using a central composite design-response surface methodology (CCD-RSM). The quadratic regression model was developed to correlate the combination of each variable to the oxidation current density as a response. A significant effect on current response was observed under optimized conditions of pH of 7.4 at −0.35 V deposition potential and 56.56 s deposition time, with p < 0.05 for each interacted factor. The obtained coefficient of determination (R2) value of 0.9992 indicated good agreement with the experimental finding. The developed nanozyme biosensor (mp20@ZIF-8/rGO/SPCE) exhibited high selectivity in the presence of the same fold concentration of interfering species with a detection limit of 0.27 μM, over a concentration range of 1 to 34 μM. The practicality of the tailored biosensor in monitoring uric acid in human serum and urine samples was validated with high-performance liquid chromatography (HPLC) and a commercial uric acid meter. Hence, nanozyme-based is a promising platform that offers a rapid, sensitive, selective, and low-cost biosensor for the non-enzymatic detection of uric acid in biological samples.
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Affiliation(s)
- Siti Fatimah Nur Abdul Aziz
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (S.F.N.A.A.); (N.A.Y.)
| | - Abu Bakar Salleh
- Enzyme and Microbial Technology Research Centre (EMTech), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (A.B.S.); (Y.M.N.)
| | - Siti Efliza Ashari
- Center of Foundation Studies for Agricultural Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia;
| | - Yahaya M. Normi
- Enzyme and Microbial Technology Research Centre (EMTech), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (A.B.S.); (Y.M.N.)
- Institute of Nanoscience and Nanotechnology (ION2), Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Nor Azah Yusof
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (S.F.N.A.A.); (N.A.Y.)
- Institute of Nanoscience and Nanotechnology (ION2), Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Shahrul Ainliah Alang Ahmad
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (S.F.N.A.A.); (N.A.Y.)
- Institute of Nanoscience and Nanotechnology (ION2), Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Correspondence:
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Yarali E, Eksin E, Torul H, Ganguly A, Tamer U, Papakonstantinou P, Erdem A. Impedimetric detection of miRNA biomarkers using paper-based electrodes modified with bulk crystals or nanosheets of molybdenum disulfide. Talanta 2022; 241:123233. [DOI: 10.1016/j.talanta.2022.123233] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Revised: 01/01/2022] [Accepted: 01/13/2022] [Indexed: 01/07/2023]
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Kaya SI, Cetinkaya A, Ozkan SA. Carbon Nanomaterial-Based Drug Sensing Platforms Using State-of-the-
Art Electroanalytical Techniques. CURR ANAL CHEM 2022. [DOI: 10.2174/1573411016999200802024629] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
Currently, nanotechnology and nanomaterials are considered as the most popular and outstanding
research subjects in scientific fields ranging from environmental studies to drug analysis. Carbon nanomaterials such as
carbon nanotubes, graphene, carbon nanofibers etc. and non-carbon nanomaterials such as quantum dots, metal
nanoparticles, nanorods etc. are widely used in electrochemical drug analysis for sensor development. Main aim of drug
analysis with sensors is developing fast, easy to use and sensitive methods. Electroanalytical techniques such as
voltammetry, potentiometry, amperometry etc. which measure electrical parameters such as current or potential in an
electrochemical cell are considered economical, highly sensitive and versatile techniques.
Methods:
Most recent researches and studies about electrochemical analysis of drugs with carbon-based nanomaterials were
analyzed. Books and review articles about this topic were reviewed.
Results:
The most significant carbon-based nanomaterials and electroanalytical techniques were explained in detail. In
addition to this; recent applications of electrochemical techniques with carbon nanomaterials in drug analysis was expressed
comprehensively. Recent researches about electrochemical applications of carbon-based nanomaterials in drug sensing were
given in a table.
Conclusion:
Nanotechnology provides opportunities to create functional materials, devices and systems using
nanomaterials with advantageous features such as high surface area, improved electrode kinetics and higher catalytic
activity. Electrochemistry is widely used in drug analysis for pharmaceutical and medical purposes. Carbon nanomaterials
based electrochemical sensors are one of the most preferred methods for drug analysis with high sensitivity, low cost and
rapid detection.
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Affiliation(s)
- S. Irem Kaya
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, 06560, Ankara,Turkey
| | - Ahmet Cetinkaya
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, 06560, Ankara,Turkey
| | - Sibel A. Ozkan
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, 06560, Ankara,Turkey
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Kalogianni DP. Nanotechnology in emerging liquid biopsy applications. NANO CONVERGENCE 2021; 8:13. [PMID: 33934252 PMCID: PMC8088419 DOI: 10.1186/s40580-021-00263-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Accepted: 03/23/2021] [Indexed: 05/17/2023]
Abstract
Liquid biopsy is considered as the most attractive alternative to traditional tissue biopsies. The major advantages of this approach lie in the non-invasive procedure, the rapidness of sample collection and the potential for early cancer diagnosis and real-time monitoring of the disease and the treatment response. Nanotechnology has dynamically emerged in a wide range of applications in the field of liquid biopsy. The benefits of using nanomaterials for biosensing include high sensitivity and detectability, simplicity in many cases, rapid analysis, the low cost of the analysis and the potential for portability and personalized medicine. The present paper reports on the nanomaterial-based methods and biosensors that have been developed for liquid biopsy applications. Most of the nanomaterials used exhibit great analytical performance; moreover, extremely low limits of detection have been achieved for all studied targets. This review will provide scientists with a comprehensive overview of all the nanomaterials and techniques that have been developed for liquid biopsy applications. A comparison of the developed methods in terms of detectability, dynamic range, time-length of the analysis and multiplicity, is also provided.
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Senturk H, Eksin E, Işık Ö, İlaslan Z, Mısırlı F, Erdem A. Impedimetric aptasensor for lysozyme detection based on carbon nanofibres enriched screen-printed electrodes. Electrochim Acta 2021. [DOI: 10.1016/j.electacta.2021.138078] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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10
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Gopalan D, Pandey A, Alex AT, Kalthur G, Pandey S, Udupa N, Mutalik S. Nanoconstructs as a versatile tool for detection and diagnosis of Alzheimer biomarkers. NANOTECHNOLOGY 2021; 32:142002. [PMID: 33238254 DOI: 10.1088/1361-6528/abcdcb] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The current review focuses towards the advancements made in the past decade in the field of nanotechnology for the early Alzheimer's disease (AD) diagnosis. This review includes the application of nanomaterials and nanosensors for the early detection of the main AD biomarkers (amyloid beta, phosphorylated tau, apolipoprotein E4 allele or APOE4, microRNAs, cholesterol, hydrogen peroxide etc) in biological fluids, to detect the biomarkers at a very low concentration ranging in pico, femto and even atto molar concentrations. The field of drug development has always aimed and is constantly working on developing disease modifying drugs, but these drugs will only succeed when given in the early disease stages. Thus, developing efficient diagnostic tools is of vital importance. Various nanomaterials such as liposomes; dendrimers; polymeric nanoparticles; coordination polymers; inorganic nanoparticles such as silica, manganese oxide, zinc oxide, iron oxide, super paramagnetic iron oxides; quantum dots, silver nanoparticles, gold nanoparticles, and carbon based nanostructures (carbon nanotubes, graphene oxide, nanofibres, nanodiamonds, carbon dots); Up-conversion nanoparticles; 2D nanomaterials; and radioactive nanoprobes have been used in constructing and improving efficiency of nano-sensors for AD biosensing at an early stage of diagnosis.
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Affiliation(s)
- Divya Gopalan
- Department of Pharmaceutics, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576 104, India
| | - Abhijeet Pandey
- Department of Pharmaceutics, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576 104, India
| | - Angel Treasa Alex
- Department of Pharmaceutical Biotechnology, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576 104, India
| | - Guruprasad Kalthur
- Department of Clinical Embryology, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, Karnataka 576 104, India
| | - Sureshwar Pandey
- School of Pharmacy, Faculty of Medical Sciences, The university of West Indies, St. Augustine, Trinidad and Tobago, Jamaica
| | - Nayanabhirama Udupa
- Department of Pharmaceutics, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576 104, India
| | - Srinivas Mutalik
- Department of Pharmaceutics, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576 104, India
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Eksin E, Torul H, Yarali E, Tamer U, Papakonstantinou P, Erdem A. Paper-based electrode assemble for impedimetric detection of miRNA. Talanta 2020; 225:122043. [PMID: 33592766 DOI: 10.1016/j.talanta.2020.122043] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 12/16/2020] [Accepted: 12/21/2020] [Indexed: 02/07/2023]
Abstract
In the present work, a paper-based electrode assemble was developed and implemented to detect target microRNA 155 (miRNA 155) via electrochemical impedance spectroscopy (EIS) measurements. In this concept, gold nanoparticles (AuNPs) modified paper based electrode assemble system (AuNP-PE) was designed, and characterized by scanning electron microscopy (SEM), cyclic voltammetry (CV) and EIS measurements. The impedimetric detection of miRNA 155 was performed by measuring the fractional change at the charge transfer resistance (Rct). The detection limits were found as 33.8 nM in PBS and 93.4 nM in fetal bovine serum (FBS) medium, respectively. The selectivity of the proposed assay was tested against to non-complementary (NC) and mismatch (MM) miRNA sequences in the presence of mixture sample containing miRNA:NC (1:1) and miRNA:MM (1:1) in PBS (pH 7.40) or FBS. The analytical performance and the selectivity of impedimetric biosensor were also tested in FBS.
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Affiliation(s)
- Ece Eksin
- Department of Analytical Chemistry, Faculty of Pharmacy, Ege University, Bornova, 35100, İzmir, Turkey
| | - Hilal Torul
- Department of Analytical Chemistry, Faculty of Pharmacy, Gazi University, Etiler, 06330, Ankara, Turkey
| | - Ece Yarali
- Department of Analytical Chemistry, Faculty of Pharmacy, Ege University, Bornova, 35100, İzmir, Turkey
| | - Ugur Tamer
- Department of Analytical Chemistry, Faculty of Pharmacy, Gazi University, Etiler, 06330, Ankara, Turkey.
| | - Pagona Papakonstantinou
- School of Engineering, Engineering Research Institute, Ulster University, Newtownabbey BT37 0QB, United Kingdom
| | - Arzum Erdem
- Department of Analytical Chemistry, Faculty of Pharmacy, Ege University, Bornova, 35100, İzmir, Turkey.
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12
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Wang J, Wen J, Yan H. Recent Applications of Carbon Nanomaterials for microRNA Electrochemical Sensing. Chem Asian J 2020; 16:114-128. [DOI: 10.1002/asia.202001260] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Indexed: 12/24/2022]
Affiliation(s)
- Jiameng Wang
- College of Pharmaceutical Science Hebei University Institute of Life Science and Green Development, Key Laboratory of Pharmaceutical Quality Control of Hebei Province Baoding 071002 P. R. China
| | - Jia Wen
- College of Pharmaceutical Science Hebei University Institute of Life Science and Green Development, Key Laboratory of Pharmaceutical Quality Control of Hebei Province Baoding 071002 P. R. China
| | - Hongyuan Yan
- College of Pharmaceutical Science Hebei University Institute of Life Science and Green Development, Key Laboratory of Pharmaceutical Quality Control of Hebei Province Baoding 071002 P. R. China
- College of Public Health Hebei University Key Laboratory of Medicinal Chemistry and Molecular Diagnosis, Ministry of Education Baoding 071002 P. R. China
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Mobed A, Hasanzadeh M. Biosensing: The best alternative for conventional methods in detection of Alzheimer's disease biomarkers. Int J Biol Macromol 2020; 161:59-71. [PMID: 32504710 DOI: 10.1016/j.ijbiomac.2020.05.257] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 05/26/2020] [Accepted: 05/28/2020] [Indexed: 11/29/2022]
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Erdem A, Eksin E. Impedimetric Sensing of Factor V Leiden Mutation by Zip Nucleic Acid Probe and Electrochemical Array. BIOSENSORS-BASEL 2020; 10:bios10090116. [PMID: 32906640 PMCID: PMC7559847 DOI: 10.3390/bios10090116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 08/27/2020] [Accepted: 09/03/2020] [Indexed: 12/02/2022]
Abstract
A carbon nanofiber enriched 8-channel screen-printed electrochemical array was used for the impedimetric detection of SNP related to Factor V Leiden (FV Leiden) mutation, which is the most common inherited form of thrombophilia. FV Leiden mutation sensing was carried out in three steps: solution-phase nucleic acid hybridization between zip nucleic acid probe (Z-probe) and mutant type DNA target, followed by the immobilization of the hybrid on the working electrode area of array, and measurement by electrochemical impedance spectroscopy (EIS). The selectivity of the assay was tested against mutation-free DNA sequences and synthetic polymerase chain reaction (PCR) samples. The developed biosensor was a trustful assay for FV Leiden mutation diagnosis, which can effectively discriminate wild type and mutant type even in PCR samples.
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Erdem A, Eksin E, Kadikoylu G, Yildiz E. Voltammetric detection of miRNA hybridization based on electroactive indicator-cobalt phenanthroline. Int J Biol Macromol 2020; 158:819-825. [PMID: 32339576 DOI: 10.1016/j.ijbiomac.2020.04.168] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 04/18/2020] [Accepted: 04/21/2020] [Indexed: 12/28/2022]
Abstract
The indicator-based nucleic acid detection protocol is one of the major approaches to monitor the sequence-selective nucleic acid hybridization-mediated recognition events in biochemical analysis. The metal complex, cobalt phenanthroline, [Co(phen)33+], which is one of the electroactive indicators, interacts more with double stranded nucleic acids via intercalation. Thus, this interaction permits an increase at the electrochemical signal of [Co(phen)33+]. In our study, the interaction of metal complex, [Co(phen)33+] with nucleic acids was examined using pencil graphite electrodes (PGEs) in combination with differential pulse voltammetry (DPV) technique. The voltammetric detection of miRNA-34a was investigated based on the changes at the electrochemical signal of [Co(phen)33+] under optimized experimental conditions; such as accumulation potentialof metal complex and DNA probe concentration, hybridization time, target miRNA concentration. Furthermore, the selectivity of electrochemical miRNA-34a biosensor was studied in contrast to different miRNAs. The applicability of indicator-based biosensor specific to miRNA-34a was also presented by using total RNA samples.
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Affiliation(s)
- Arzum Erdem
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, 35100, Bornova, Izmir, Turkey; Biomedical Technologies Department, Graduate School of Natural and Applied Sciences, Ege University, 35100, Bornova, Izmir, Turkey.
| | - Ece Eksin
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, 35100, Bornova, Izmir, Turkey
| | - Gulce Kadikoylu
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, 35100, Bornova, Izmir, Turkey; Biomedical Technologies Department, Graduate School of Natural and Applied Sciences, Ege University, 35100, Bornova, Izmir, Turkey
| | - Esma Yildiz
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, 35100, Bornova, Izmir, Turkey; Biomedical Technologies Department, Graduate School of Natural and Applied Sciences, Ege University, 35100, Bornova, Izmir, Turkey
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16
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Erdem A, Eksin E. Electrochemical Detection of Solution Phase Hybridization Related to Single Nucleotide Mutation by Carbon Nanofibers Enriched Electrodes. MATERIALS (BASEL, SWITZERLAND) 2019; 12:E3377. [PMID: 31623126 PMCID: PMC6829215 DOI: 10.3390/ma12203377] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Revised: 10/06/2019] [Accepted: 10/11/2019] [Indexed: 12/16/2022]
Abstract
In the present study, a sensitive and selective impedimetric detection of solution-phase nucleic acid hybridization related to Factor V Leiden (FV Leiden) mutation was performed by carbon nanofibers (CNF) modified screen printed electrodes (SPE). The microscopic and electrochemical characterization of CNF-SPEs was explored in comparison to the unmodified electrodes. Since the FV Leiden mutation is a widespread inherited risk factor predisposing to venous thromboembolism, this study herein aimed to perform the impedimetric detection of FV Leiden mutation by a zip nucleic acid (ZNA) probe-based assay in combination with CNF-SPEs. The selectivity of the assay was then examined against the mutation-free DNA sequences as well as the synthetic PCR samples.
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Affiliation(s)
- Arzum Erdem
- Faculty of Pharmacy, Analytical Chemistry Department, Ege University, Bornova, Izmir 35100, Turkey.
- Biotechnology Department, Graduate School of Natural and Applied Sciences, Ege University, Bornova, Izmir 35100, Turkey.
| | - Ece Eksin
- Faculty of Pharmacy, Analytical Chemistry Department, Ege University, Bornova, Izmir 35100, Turkey.
- Biotechnology Department, Graduate School of Natural and Applied Sciences, Ege University, Bornova, Izmir 35100, Turkey.
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17
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Yaralı E, Kanat E, Erac Y, Erdem A. Ionic Liquid Modified Single‐use Electrode Developed for Voltammetric Detection of miRNA‐34a and its Application to Real Samples. ELECTROANAL 2019. [DOI: 10.1002/elan.201900353] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Ece Yaralı
- Department of Analytical Chemistry, Faculty of PharmacyEge University, Bornova 35100 Izmir Turkey
- Department of Materials Science and Engineering, Graduate School of Natural and Applied ScienceEge University Izmir Turkey
| | - Erkin Kanat
- Department of Analytical Chemistry, Faculty of PharmacyEge University, Bornova 35100 Izmir Turkey
- Department of Biotechnology, Graduate School of Natural and Applied ScienceEge University Izmir Turkey
| | - Yasemin Erac
- Department of Pharmacology, Faculty of PharmacyEge University Izmir Turkey
| | - Arzum Erdem
- Department of Analytical Chemistry, Faculty of PharmacyEge University, Bornova 35100 Izmir Turkey
- Department of Materials Science and Engineering, Graduate School of Natural and Applied ScienceEge University Izmir Turkey
- Department of Biotechnology, Graduate School of Natural and Applied ScienceEge University Izmir Turkey
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18
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Karayeğen G, Koçum IC, Çökeli Ler Serdaroğlu D, Doğan M. Aligned polyvinylpyrrolidone nanofibers with advanced electrospinning for biomedical applications. Biomed Mater Eng 2019; 29:685-697. [PMID: 30400080 DOI: 10.3233/bme-181017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
BACKGROUND Electrospinning is a highly effective method in order to generate nano-scaled fibers. In conventional electrospinning technique, geometry of nanofibers are mostly random due to the chaotic behavior of polymer jet. OBJECTIVE Purpose of this study is to produce aligned nanofibers from PVP polymers with advanced electrospinning technique in order to be used in a potential novel sensor applications, tissue regeneration and engineering. METHODS In this study, by using finite hollow cylinder focusing electrodes, an external electrostatic field is created. With these electrodes, it is aimed to decrease whipping instability of polymer jet. In addition, it is also investigated that the alignment ratio of nanofibers by using conductive parallel electrodes which placed through jet trajectory. RESULTS In conclusion, with the effect of electrical field created by cylinder electrodes, radius of the fiber dispersion on the collector was able to be reduced and aligned nanofibers were successfully produced by using electrical field generated from the parallel plates. CONCLUSIONS Radius of the fiber dispersion on the collector is 9.95 mm and fiber diameters varied between 800 nm and 3 μm. Additionally, alignment ratio of the fibers is determined with ImageJ software. These alignment of nanofibers can be used in tissue engineering applications and sensor applications.
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Affiliation(s)
- Gökay Karayeğen
- Department of Biomedical Equipment Technology, Başkent University, Bağlıca Campus, 06790 Ankara, Turkey
| | - I Cengiz Koçum
- Department of Biomedical Engineering, Başkent University, Bağlıca Campus, 06530 Ankara, Turkey
| | | | - Mustafa Doğan
- Deparment of Control and Automation Engineering, Istanbul Technical University, 34467 Istanbul, Turkey
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19
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Rasouli R, Barhoum A, Bechelany M, Dufresne A. Nanofibers for Biomedical and Healthcare Applications. Macromol Biosci 2018; 19:e1800256. [DOI: 10.1002/mabi.201800256] [Citation(s) in RCA: 109] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Revised: 10/30/2018] [Indexed: 12/13/2022]
Affiliation(s)
- Rahimeh Rasouli
- Department of Medical NanotechnologyTehran University of Medical Sciences—International Campus 14177‐43373 Tehran Iran
| | - Ahmed Barhoum
- Faculty of ScienceChemistry DepartmentHelwan University 11795 Helwan Cairo Egypt
- Institut Européen des Membranes (IEM UMR 5635)ENSCMCNRSUniversity of Montpellier 34090 Montpellier France
| | - Mikhael Bechelany
- Institut Européen des Membranes (IEM UMR 5635)ENSCMCNRSUniversity of Montpellier 34090 Montpellier France
| | - Alain Dufresne
- LGP2, Grenoble INP, CNRSUniversité Grenoble Alpes F‐38000 Grenoble France
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20
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Kesici E, Eksin E, Erdem A. An Impedimetric Biosensor Based on Ionic Liquid-Modified Graphite Electrodes Developed for microRNA-34a Detection. SENSORS (BASEL, SWITZERLAND) 2018; 18:E2868. [PMID: 30200274 PMCID: PMC6164345 DOI: 10.3390/s18092868] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 08/10/2018] [Accepted: 08/21/2018] [Indexed: 12/22/2022]
Abstract
In the present work, an impedimetric nucleic acid biosensor has been designed for the purpose of detection of microRNA (miRNA). Ionic liquid (1-butyl-3-methylimidazolium hexafluorophosphate (IL))-modified chemically activated pencil graphite electrodes (PGEs) were used for the sensitive and selective detection of miRNA-34a. After covalent activation of the PGE surface using covalent agents (CAs), the ionic liquid (IL) was immobilized onto the surface of the chemically activated PGE by passive adsorption. The electrochemical and microscopic characterization of the IL/CA/PGEs was performed by electrochemical impedance spectroscopy (EIS), cyclic voltammetry (CV) and scanning electron microscopy (SEM). DNA probe concentration, miRNA target concentration, and also the hybridization time and wet adsorption time were optimized by using the EIS technique. Then, the hybridization occurred between specific DNA probes and miRNA-34a was immobilized onto the surface of the IL/CA/PGEs. The impedimetric detection of miRNA-DNA hybrid was performed by EIS. The detection limit (DL) was calculated in a linear concentration range of 2⁻10 µg/mL miRNA-34a target, and it was found to be 0.772 µg/mL (109 nM) in phosphate buffer solution (PBS) and 0.826 µg/mL (117 nM) in diluted fetal bovine serum (FBS). The selectivity of impedimetric biosensor for miRNA-34a was also tested against to other non-complementary miRNA sequences both in buffer media, or diluted FBS.
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Affiliation(s)
- Ece Kesici
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, Bornova 35100, Turkey.
- Biotechnology Department, The Institute of Natural and Applied Sciences, Ege University, Bornova 35100, Turkey.
| | - Ece Eksin
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, Bornova 35100, Turkey.
- Biotechnology Department, The Institute of Natural and Applied Sciences, Ege University, Bornova 35100, Turkey.
| | - Arzum Erdem
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, Bornova 35100, Turkey.
- Biotechnology Department, The Institute of Natural and Applied Sciences, Ege University, Bornova 35100, Turkey.
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21
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Carneiro MC, Moreira FT, Dutra RA, Fernandes R, Sales MGF. Homemade 3-carbon electrode system for electrochemical sensing: Application to microRNA detection. Microchem J 2018. [DOI: 10.1016/j.microc.2017.12.026] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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22
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Electrochemical detection of microRNAs by graphene oxide modified disposable graphite electrodes. J Electroanal Chem (Lausanne) 2018. [DOI: 10.1016/j.jelechem.2018.01.015] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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23
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Kilic T, Erdem A, Ozsoz M, Carrara S. microRNA biosensors: Opportunities and challenges among conventional and commercially available techniques. Biosens Bioelectron 2018; 99:525-546. [DOI: 10.1016/j.bios.2017.08.007] [Citation(s) in RCA: 167] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Revised: 08/01/2017] [Accepted: 08/04/2017] [Indexed: 12/19/2022]
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24
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Yammouri G, Mandli J, Mohammadi H, Amine A. Development of an electrochemical label-free biosensor for microRNA-125a detection using pencil graphite electrode modified with different carbon nanomaterials. J Electroanal Chem (Lausanne) 2017. [DOI: 10.1016/j.jelechem.2017.10.012] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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25
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Impedimetric genosensor for miRNA-34a detection in cell lysates using polypyrrole. J Solid State Electrochem 2017. [DOI: 10.1007/s10008-017-3819-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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26
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Rashid JIA, Yusof NA. The strategies of DNA immobilization and hybridization detection mechanism in the construction of electrochemical DNA sensor: A review. SENSING AND BIO-SENSING RESEARCH 2017. [DOI: 10.1016/j.sbsr.2017.09.001] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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27
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Erdem A, Eksin E, Isin D, Polat D. Graphene Oxide Modified Chemically Activated Graphite Electrodes for Detection of microRNA. ELECTROANAL 2017. [DOI: 10.1002/elan.201600761] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Arzum Erdem
- Faculty of Pharmacy, Analytical Chemistry Department; Ege University; 35100 Bornova Izmir TURKEY
| | - Ece Eksin
- Faculty of Pharmacy, Analytical Chemistry Department; Ege University; 35100 Bornova Izmir TURKEY
| | - Deniz Isin
- Faculty of Pharmacy, Analytical Chemistry Department; Ege University; 35100 Bornova Izmir TURKEY
| | - Derya Polat
- Faculty of Pharmacy, Analytical Chemistry Department; Ege University; 35100 Bornova Izmir TURKEY
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28
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Azimzadeh M, Nasirizadeh N, Rahaie M, Naderi-Manesh H. Early detection of Alzheimer's disease using a biosensor based on electrochemically-reduced graphene oxide and gold nanowires for the quantification of serum microRNA-137. RSC Adv 2017. [DOI: 10.1039/c7ra09767k] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Serum miR-137 is quantified for the early detection of Alzheimer's disease using a electrochemically reduced graphene oxide and gold nanowire modified electrode.
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Affiliation(s)
- Mostafa Azimzadeh
- Stem Cell Biology Research Center
- Yazd Reproductive Sciences Institute
- Shahid Sadoughi University of Medical Sciences
- Yazd
- Iran
| | - Navid Nasirizadeh
- Department of Textile and Polymer Engineering
- Yazd Branch
- Islamic Azad University
- Yazd
- Iran
| | - Mahdi Rahaie
- Department of Life Science Engineering
- Faculty of New Sciences and Technologies
- University of Tehran
- Tehran
- Iran
| | - Hossein Naderi-Manesh
- Department of Nanobiotechnology/Biophysics
- Faculty of Biological Sciences
- Tarbiat Modares University
- Tehran
- Iran
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29
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Carbon nanoparticle modified screen printed carbon electrode as a disposable electrochemical immunosensor strip for the detection of Japanese encephalitis virus. Mikrochim Acta 2016. [DOI: 10.1007/s00604-016-2029-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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30
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Trojanowicz M. Impact of nanotechnology on design of advanced screen-printed electrodes for different analytical applications. Trends Analyt Chem 2016. [DOI: 10.1016/j.trac.2016.03.027] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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31
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Iwasaki T, Makino Y, Fukukawa M, Nakamura H, Watano S. Low-temperature growth of nitrogen-doped carbon nanofibers by acetonitrile catalytic CVD using Ni-based catalysts. APPLIED NANOSCIENCE 2016. [DOI: 10.1007/s13204-016-0535-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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32
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Topkaya SN, Azimzadeh M, Ozsoz M. Electrochemical Biosensors for Cancer Biomarkers Detection: Recent Advances and Challenges. ELECTROANAL 2016. [DOI: 10.1002/elan.201501174] [Citation(s) in RCA: 115] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Seda Nur Topkaya
- Department of Analytical Chemistry; Faculty of Pharmacy; Ege University, Ege University Faculty of Pharmacy Department of Analytical Chemistry; Izmir Turkey 35100 Bornova/Izmir Turkey
| | - Mostafa Azimzadeh
- Department of Life Science Engineering; Faculty of New Sciences and Technologies; University of Tehran; Tehran Iran
| | - Mehmet Ozsoz
- Department of Biomedical Engineering Faculty of Engineering and Architecture; Gediz University; İzmir Turkey
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33
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Affiliation(s)
- Richard M. Graybill
- Department of Chemistry, University of Illinois at Urbana-Champaign, 600 S. Mathews Ave., Urbana, IL 61801
| | - Ryan C. Bailey
- Department of Chemistry, University of Illinois at Urbana-Champaign, 600 S. Mathews Ave., Urbana, IL 61801
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