Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential

Unraveling microbial processes involved in carbon and nitrogen cycling and greenhouse gas emissions in rewetted peatlands by molecular biology

Restoration of drained peatlands through rewetting has recently emerged as a prevailing strategy to mitigate excessive greenhouse gas emissions and re-establish the vital carbon sequestration capacity of peatlands. Rewetting can help to restore vegetation communities and biodiversity, while still allowing for extensive agricultural management such as paludiculture. Belowground processes governing carbon fluxes and greenhouse gas dynamics are mediated by a complex network of microbial communities and processes. Our understanding of this complexity and its multi-factorial controls in rewetted peatlands is limited. Here, we summarize the research regarding the role of soil microbial communities and functions in driving carbon and nutrient cycling in rewetted peatlands including the use of molecular biology techniques in understanding biogeochemical processes linked to greenhouse gas fluxes. We emphasize that rapidly advancing molecular biology approaches, such as high-throughput sequencing, are powerful tools helping to elucidate the dynamics of key biogeochemical processes when combined with isotope tracing and greenhouse gas measuring techniques. Insights gained from the gathered studies can help inform efficient monitoring practices for rewetted peatlands and the development of climate-smart restoration and management strategies.

Supplementary Information

The online version contains supplementary material available at 10.1007/s10533-024-01122-6.

Effects of straw and plastic film mulching on microbial functional genes involved in soil nitrogen cycling

Introduction

Microorganisms regulate soil nitrogen (N) cycling in cropping systems. However, how soil microbial functional genes involved in soil N cycling respond to mulching practices is not well known.

Methods

We collected soil samples from a spring maize field mulched with crop straw (SM) and plastic film (FM) for 10-year and with no mulching (CK) in the Loess Plateau. Microbial functional genes involved in soil N cycling were quantified using metagenomic sequencing. We collected soil samples from a spring maize field mulched with crop straw (SM) and plastic film (FM) for 10-year and with no mulching (CK) in the Loess Plateau. Microbial functional genes involved in soil N cycling were quantified using metagenomic sequencing.

Results

Compared to that in CK, the total abundance of genes involved in soil N cycling increased in SM but had no significant changes in FM. Specifically, SM increased the abundances of functional genes that involved in dissimilatory nitrate reduction to ammonium (nirB, napA, and nrfA), while FM decreased the abundances of functional genes that involved in ammonification (ureC and ureA) in comparison with CK. Other genes involved in assimilatory nitrate reduction, denitrification, and ammonia assimilation, however, were not significantly changed with mulching practices. The nirB and napA were derived from Proteobacteria (mainly Sorangium), and the ureC was derived from Actinobacteria (mainly Streptomyces). Mental test showed that the abundance of functional genes that involved in dissimilatory nitrate reduction was positively correlated with the contents of soil microbial biomass N, potential N mineralization, particulate organic N, and C fractions, while ammonification related gene abundance was positively correlated with soil pH, microbial biomass C and N, and mineral N contents.

Discussion

Overall, this study showed that SM could improve soil N availability and promote the soil N cycling by increasing the abundance of functional genes that involved in DNRA, while FM reduced the abundance of functional genes that involved in ammonification and inhibited soil N cycling.

Low water level drives high nitrous oxide emissions from treatment wetland

Wetlands that are restored for carbon sequestration or created for water treatment are an important sources of greenhouse gases, especially methane. The emission of nitrous oxide (N₂O) from these systems is often considered negligible due to the inundation and anerobic conditions that support complete denitrification. We used closed chamber method to analyze N₂O fluxes over a long-term period across heterogeneous wetland ecosystem constructed for treating nitrate-rich agricultural runoff. Our results showed that the water depth and temperature were most important factors affecting high N₂O emissions. The shallow areas where water depth was less than 9 cm created N₂O hot spots that emitted 48.8% of the total wetlands annual emission while only covering 6% of the total area. The annual emission from shallow-water hot spots with dense helophytic vegetation was 4.85 ± 0.5 g N₂O-N m^-2 y^-1 while it was only 0.37 ± 0.01 g N₂O-N m^-2 y^-1 in deeper zones. While the water depth was the main factor for high N₂O emissions, the temperatures increased the magnitude of the flux and therefore summer droughts and water drawdown created even larger hot spots. These results also suggest that IPCC benchmarks could underestimate N₂O emission from shallow waterbodies. Thus, it is important that the shallow zones and water level drawdown in the created or restored wetlands is avoided to minimize the N₂O flux.