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Espenberg M, Pille K, Yang B, Maddison M, Abdalla M, Smith P, Li X, Chan PL, Mander Ü. Towards an integrated view on microbial CH 4, N 2O and N 2 cycles in brackish coastal marsh soils: A comparative analysis of two sites. Sci Total Environ 2024; 918:170641. [PMID: 38325442 PMCID: PMC10884468 DOI: 10.1016/j.scitotenv.2024.170641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Revised: 01/29/2024] [Accepted: 01/31/2024] [Indexed: 02/09/2024]
Abstract
Coastal ecosystems, facing threats from global change and human activities like excessive nutrients, undergo alterations impacting their function and appearance. This study explores the intertwined microbial cycles of carbon (C) and nitrogen (N), encompassing methane (CH4), nitrous oxide (N2O), and nitrogen gas (N2) fluxes, to determine nutrient transformation processes between the soil-plant-atmosphere continuum in the coastal ecosystems with brackish water. Water salinity negatively impacted denitrification, bacterial nitrification, N fixation, and n-DAMO processes, but did not significantly affect archaeal nitrification, COMAMMOX, DNRA, and ANAMMOX processes in the N cycle. Plant species age and biomass influenced CH4 and N2O emissions. The highest CH4 emissions were from old Spartina and mixed Spartina and Scirpus sites, while Phragmites sites emitted the most N2O. Nitrification and incomplete denitrification mainly governed N2O emissions depending on the environmental conditions and plants. The higher genetic potential of ANAMMOX reduced excessive N by converting it to N2 in the sites with higher average temperatures. The presence of plants led to a decrease in the N fixers' abundance. Plant biomass negatively affected methanogenetic mcrA genes. Microbes involved in n-DAMO processes helped mitigate CH4 emissions. Over 93 % of the total climate forcing came from CH4 emissions, except for the Chinese bare site where the climate forcing was negative, and for Phragmites sites, where almost 60 % of the climate forcing came from N2O emissions. Our findings indicate that nutrient cycles, CH4, and N2O fluxes in soils are context-dependent and influenced by environmental factors and vegetation. This underscores the need for empirical analysis of both C and N cycles at various levels (soil-plant-atmosphere) to understand how habitats or plants affect nutrient cycles and greenhouse gas emissions.
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Affiliation(s)
- Mikk Espenberg
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia; Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom.
| | - Kristin Pille
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Bin Yang
- State Key Laboratory of Estuarine and Coastal Research, Institute of Eco-Chongming, East China Normal University, Shanghai, China
| | - Martin Maddison
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Mohamed Abdalla
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Pete Smith
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Xiuzhen Li
- State Key Laboratory of Estuarine and Coastal Research, Institute of Eco-Chongming, East China Normal University, Shanghai, China
| | - Ping-Lung Chan
- School of Science and Technology, Hong Kong Metropolitan University, Hong Kong, China
| | - Ülo Mander
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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Kasak K, Kill K, Uuemaa E, Maddison M, Aunap R, Riibak K, Okiti I, Teemusk A, Mander Ü. Low water level drives high nitrous oxide emissions from treatment wetland. J Environ Manage 2022; 312:114914. [PMID: 35339792 DOI: 10.1016/j.jenvman.2022.114914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 02/21/2022] [Accepted: 03/14/2022] [Indexed: 06/14/2023]
Abstract
Wetlands that are restored for carbon sequestration or created for water treatment are an important sources of greenhouse gases, especially methane. The emission of nitrous oxide (N2O) from these systems is often considered negligible due to the inundation and anerobic conditions that support complete denitrification. We used closed chamber method to analyze N2O fluxes over a long-term period across heterogeneous wetland ecosystem constructed for treating nitrate-rich agricultural runoff. Our results showed that the water depth and temperature were most important factors affecting high N2O emissions. The shallow areas where water depth was less than 9 cm created N2O hot spots that emitted 48.8% of the total wetlands annual emission while only covering 6% of the total area. The annual emission from shallow-water hot spots with dense helophytic vegetation was 4.85 ± 0.5 g N2O-N m-2 y-1 while it was only 0.37 ± 0.01 g N2O-N m-2 y-1 in deeper zones. While the water depth was the main factor for high N2O emissions, the temperatures increased the magnitude of the flux and therefore summer droughts and water drawdown created even larger hot spots. These results also suggest that IPCC benchmarks could underestimate N2O emission from shallow waterbodies. Thus, it is important that the shallow zones and water level drawdown in the created or restored wetlands is avoided to minimize the N2O flux.
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Affiliation(s)
- Kuno Kasak
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia.
| | - Keit Kill
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
| | - Evelyn Uuemaa
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
| | - Martin Maddison
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
| | - Raivo Aunap
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
| | - Kersti Riibak
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - Isaac Okiti
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
| | - Alar Teemusk
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
| | - Ülo Mander
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
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Bahram M, Espenberg M, Pärn J, Lehtovirta-Morley L, Anslan S, Kasak K, Kõljalg U, Liira J, Maddison M, Moora M, Niinemets Ü, Öpik M, Pärtel M, Soosaar K, Zobel M, Hildebrand F, Tedersoo L, Mander Ü. Structure and function of the soil microbiome underlying N 2O emissions from global wetlands. Nat Commun 2022; 13:1430. [PMID: 35301304 PMCID: PMC8931052 DOI: 10.1038/s41467-022-29161-3] [Citation(s) in RCA: 36] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Accepted: 02/23/2022] [Indexed: 01/16/2023] Open
Abstract
Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and ozone depleter released by microbes. Yet, microbial players and processes underlying the N2O emissions from wetland soils are poorly understood. Using in situ N2O measurements and by determining the structure and potential functional of microbial communities in 645 wetland soil samples globally, we examined the potential role of archaea, bacteria, and fungi in nitrogen (N) cycling and N2O emissions. We show that N2O emissions are higher in drained and warm wetland soils, and are correlated with functional diversity of microbes. We further provide evidence that despite their much lower abundance compared to bacteria, nitrifying archaeal abundance is a key factor explaining N2O emissions from wetland soils globally. Our data suggest that ongoing global warming and intensifying environmental change may boost archaeal nitrifiers, collectively transforming wetland soils to a greater source of N2O.
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Affiliation(s)
- Mohammad Bahram
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia. .,Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
| | - Mikk Espenberg
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jaan Pärn
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | | | - Sten Anslan
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kuno Kasak
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Urmas Kõljalg
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jaan Liira
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Maddison
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Mari Moora
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Ülo Niinemets
- Institute of Agricultural & Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Meelis Pärtel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kaido Soosaar
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Zobel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Falk Hildebrand
- Quadram Institute Bioscience, Norwich, Norfolk, UK.,Digital Biology, Earlham Institute, Norwich, Norfolk, UK
| | - Leho Tedersoo
- College of Science, King Saud University, Riyadh, Saudi Arabia.,Mycology and Microbiology Center, University of Tartu, Tartu, Estonia
| | - Ülo Mander
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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Mander Ü, Krasnova A, Schindler T, Megonigal JP, Escuer-Gatius J, Espenberg M, Machacova K, Maddison M, Pärn J, Ranniku R, Pihlatie M, Kasak K, Niinemets Ü, Soosaar K. Long-term dynamics of soil, tree stem and ecosystem methane fluxes in a riparian forest. Sci Total Environ 2022; 809:151723. [PMID: 34801507 DOI: 10.1016/j.scitotenv.2021.151723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 10/20/2021] [Accepted: 11/12/2021] [Indexed: 06/13/2023]
Abstract
The carbon (C) budgets of riparian forests are sensitive to climatic variability. Therefore, riparian forests are hot spots of C cycling in landscapes. Only a limited number of studies on continuous measurements of methane (CH4) fluxes from riparian forests is available. Here, we report continuous high-frequency soil and ecosystem (eddy-covariance; EC) measurements of CH4 fluxes with a quantum cascade laser absorption spectrometer for a 2.5-year period and measurements of CH4 fluxes from tree stems using manual chambers for a 1.5 year period from a temperate riparian Alnus incana forest. The results demonstrate that the riparian forest is a minor net annual sink of CH4 consuming 0.24 kg CH4-C ha-1 y-1. Soil water content is the most important determinant of soil, stem, and EC fluxes, followed by soil temperature. There were significant differences in CH4 fluxes between the wet and dry periods. During the wet period, 83% of CH4 was emitted from the tree stems while the ecosystem-level emission was equal to the sum of soil and stem emissions. During the dry period, CH4 was substantially consumed in the soil whereas stem emissions were very low. A significant difference between the EC fluxes and the sum of soil and stem fluxes during the dry period is most likely caused by emission from the canopy whereas at the ecosystem level the forest was a clear CH4 sink. Our results together with past measurements of CH4 fluxes in other riparian forests suggest that temperate riparian forests can be long-term CH4 sinks.
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Affiliation(s)
- Ülo Mander
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia; Global Change Research Institute of the Czech Academy of Sciences, Department of Ecosystem Trace Gas Exchange, Belidla 986/4a, 603 00 Brno, Czech Republic.
| | - Alisa Krasnova
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia; Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Kreutzwaldi 1, 51006 Tartu, Estonia
| | - Thomas Schindler
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia; Global Change Research Institute of the Czech Academy of Sciences, Department of Ecosystem Trace Gas Exchange, Belidla 986/4a, 603 00 Brno, Czech Republic
| | - J Patrick Megonigal
- Smithsonian Environmental Institute, 647 Contees Wharf Road Edgewater, MD 21037-0028, USA
| | - Jordi Escuer-Gatius
- Institute of Agricultural & Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, 51006 Tartu, Estonia
| | - Mikk Espenberg
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
| | - Katerina Machacova
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia; Global Change Research Institute of the Czech Academy of Sciences, Department of Ecosystem Trace Gas Exchange, Belidla 986/4a, 603 00 Brno, Czech Republic
| | - Martin Maddison
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
| | - Jaan Pärn
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
| | - Reti Ranniku
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
| | - Mari Pihlatie
- Department of Agricultural Sciences, Environmental Soil Sciences, University of Helsinki, Latokartanonkaari 7, 00014 Helsinki, Finland; Institute for Atmospheric and Earth System Research (INAR) / Forest Science, University of Helsinki, Physicum, Kumpula campus, Gustaf Hällströmin katu 2, 00560 Helsinki, Finland; Department of Agricultural Sciences, Viikki Plant Science Centre (ViPS), University of Helsinki, Viikinkaari 2a, 00014 Helsinki, Finland
| | - Kuno Kasak
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
| | - Ülo Niinemets
- Institute of Agricultural & Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, 51006 Tartu, Estonia
| | - Kaido Soosaar
- Department of Geography, Institute of Ecology & Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia; Global Change Research Institute of the Czech Academy of Sciences, Department of Ecosystem Trace Gas Exchange, Belidla 986/4a, 603 00 Brno, Czech Republic
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Mander Ü, Tournebize J, Espenberg M, Chaumont C, Torga R, Garnier J, Muhel M, Maddison M, Lebrun JD, Uher E, Remm K, Pärn J, Soosaar K. High denitrification potential but low nitrous oxide emission in a constructed wetland treating nitrate-polluted agricultural run-off. Sci Total Environ 2021; 779:146614. [PMID: 34030255 DOI: 10.1016/j.scitotenv.2021.146614] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 03/12/2021] [Accepted: 03/16/2021] [Indexed: 06/12/2023]
Abstract
Constructed wetlands (CW) can efficiently remove nitrogen from polluted agricultural run-off, however, a potential caveat is nitrous oxide (N2O), a harmful greenhouse gas and stratospheric ozone depleter. During five sampling campaigns, we measured N2O fluxes from a 0.53 ha off-stream CW treating nitrate-rich water from the intensively fertilized watershed in Rampillon, France, using automated chambers with a quantum cascade laser system, and manual chambers. Sediment samples were analysed for potential N2 flux using the HeO2 incubation method. Both inlet nitrate (NO3-) concentrations and N2O emission varied significantly between the seasons. In the Autumn and Winter inlet concentrations were about 11 mg NO3--N L-1, and < 6.5 mg NO3--N L-1 in the Spring and Summer. N2O emission was highest in the Autumn (mean ± standard error: 9.7 ± 0.2 μg N m-2 h-1) and lowest in the Summer (wet period: 0.2 ± 0.3 μg N m-2 h-1). The CW was a very weak source of N2O emitting 0.32 kg N2O-N ha-1 yr-1 and removing around 938 kg NO3--N ha-1 yr-1, the ratio of N2O-N emitted to NO3--N removed was 0.033%. The automated and manual chambers gave similar results. From the potential N2O formation in the sediment, only 9% was emitted to the atmosphere, the average N2 N 2O ratio was high: 89:1 for N2-Npotential: N2O-Npotential and 1353:1 for N2-Npotential: N2O-Nemitted. These results indicate complete denitrification. The focused principal component analysis showed strong positive correlation between the gaseous N2O fluxes and the following environmental factors: NO3--N concentrations in inlet water, streamflow, and nitrate reduction rate. Water temperature, TOC and DOC in the water and hydraulic residence time showed negative correlations with N2O emissions. Shallow off-stream CWs such as Rampillon may have good nitrate removal capacity with low N2O emissions.
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Affiliation(s)
- Ülo Mander
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia; UR 1462 HYCAR, University Paris Saclay, French National Institute for Agriculture, Food, and Environment (INRAE), Antony, France.
| | - Julien Tournebize
- UR 1462 HYCAR, University Paris Saclay, French National Institute for Agriculture, Food, and Environment (INRAE), Antony, France
| | - Mikk Espenberg
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Cedric Chaumont
- UR 1462 HYCAR, University Paris Saclay, French National Institute for Agriculture, Food, and Environment (INRAE), Antony, France
| | - Raili Torga
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | | | - Mart Muhel
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Maddison
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jérémie D Lebrun
- UR 1462 HYCAR, University Paris Saclay, French National Institute for Agriculture, Food, and Environment (INRAE), Antony, France
| | - Emmanuelle Uher
- UR 1462 HYCAR, University Paris Saclay, French National Institute for Agriculture, Food, and Environment (INRAE), Antony, France
| | - Kalle Remm
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jaan Pärn
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kaido Soosaar
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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6
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Truu M, Nõlvak H, Ostonen I, Oopkaup K, Maddison M, Ligi T, Espenberg M, Uri V, Mander Ü, Truu J. Soil Bacterial and Archaeal Communities and Their Potential to Perform N-Cycling Processes in Soils of Boreal Forests Growing on Well-Drained Peat. Front Microbiol 2020; 11:591358. [PMID: 33343531 PMCID: PMC7744593 DOI: 10.3389/fmicb.2020.591358] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 11/16/2020] [Indexed: 12/18/2022] Open
Abstract
Peatlands are unique wetland ecosystems that cover approximately 3% of the world’s land area and are mostly located in boreal and temperate regions. Around 15 Mha of these peatlands have been drained for forestry during the last century. This study investigated soil archaeal and bacterial community structure and abundance, as well as the abundance of marker genes of nitrogen transformation processes (nitrogen fixation, nitrification, denitrification, and dissimilatory nitrate reduction to ammonia) across distance gradients from drainage ditches in nine full-drained, middle-aged peatland forests dominated by Scots pine, Norway spruce, or Downy birch. The dominating tree species had a strong effect on the chemical properties (pH, N and C/N status) of initially similar Histosols and affected the bacterial and archaeal community structure and abundance of microbial groups involved in the soil nitrogen cycle. The pine forests were distinguished by having the lowest fine root biomass of trees, pH, and N content and the highest potential for N fixation. The distance from drainage ditches affected the spatial distribution of bacterial and archaeal communities (especially N-fixers, nitrifiers, and denitrifiers possessing nosZ clade II), but this effect was often dependent on the conditions created by the dominance of certain tree species. The composition of the nitrifying microbial community was dependent on the soil pH, and comammox bacteria contributed significantly to nitrate formation in the birch and spruce soils where the pH was higher than 4.6. The highest N2O emission was recorded from soils with higher bacterial and archaeal phylogenetic diversity such as birch forest soils. This study demonstrates that the long-term growth of forests dominated by birch, pine, and spruce on initially similar organic soil has resulted in tree-species-specific changes in the soil properties and the development of forest-type-specific soil prokaryotic communities with characteristic functional properties and relationships within microbial communities.
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Affiliation(s)
- Marika Truu
- Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
| | - Hiie Nõlvak
- Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
| | - Ivika Ostonen
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kristjan Oopkaup
- Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
| | - Martin Maddison
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Teele Ligi
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Mikk Espenberg
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Veiko Uri
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Ülo Mander
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jaak Truu
- Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
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7
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Koebsch F, Sonnentag O, Järveoja J, Peltoniemi M, Alekseychik P, Aurela M, Arslan AN, Dinsmore K, Gianelle D, Helfter C, Jackowicz-Korczynski M, Korrensalo A, Leith F, Linkosalmi M, Lohila A, Lund M, Maddison M, Mammarella I, Mander Ü, Minkkinen K, Pickard A, Pullens JWM, Tuittila ES, Nilsson MB, Peichl M. Refining the role of phenology in regulating gross ecosystem productivity across European peatlands. Glob Chang Biol 2020; 26:876-887. [PMID: 31686431 DOI: 10.1111/gcb.14905] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 09/20/2019] [Accepted: 10/09/2019] [Indexed: 06/10/2023]
Abstract
The role of plant phenology as a regulator for gross ecosystem productivity (GEP) in peatlands is empirically not well constrained. This is because proxies to track vegetation development with daily coverage at the ecosystem scale have only recently become available and the lack of such data has hampered the disentangling of biotic and abiotic effects. This study aimed at unraveling the mechanisms that regulate the seasonal variation in GEP across a network of eight European peatlands. Therefore, we described phenology with canopy greenness derived from digital repeat photography and disentangled the effects of radiation, temperature and phenology on GEP with commonality analysis and structural equation modeling. The resulting relational network could not only delineate direct effects but also accounted for possible effect combinations such as interdependencies (mediation) and interactions (moderation). We found that peatland GEP was controlled by the same mechanisms across all sites: phenology constituted a key predictor for the seasonal variation in GEP and further acted as a distinct mediator for temperature and radiation effects on GEP. In particular, the effect of air temperature on GEP was fully mediated through phenology, implying that direct temperature effects representing the thermoregulation of photosynthesis were negligible. The tight coupling between temperature, phenology and GEP applied especially to high latitude and high altitude peatlands and during phenological transition phases. Our study highlights the importance of phenological effects when evaluating the future response of peatland GEP to climate change. Climate change will affect peatland GEP especially through changing temperature patterns during plant phenologically sensitive phases in high latitude and high altitude regions.
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Affiliation(s)
- Franziska Koebsch
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
- Department for Landscape Ecology and Site Evaluation, University of Rostock, Rostock, Germany
| | - Oliver Sonnentag
- Département de géographie and Centre d'études nordiques, Université de Montréal, Montréal, Canada
| | - Järvi Järveoja
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | | | - Pavel Alekseychik
- Natural Resources Institute Finland (Luke), Helsinki, Finland
- Institute for Atmospheric and Earth System Research (INAR), University of Helsinki, Helsinki, Finland
| | - Mika Aurela
- Finnish Meteorological Institute, Helsinki, Finland
| | | | | | - Damiano Gianelle
- Department of Sustainable Agro-ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy
| | | | - Marcin Jackowicz-Korczynski
- Department of Bioscience, Aarhus University, Roskilde, Denmark
- Department of Physical Geography and Ecosystem Science, Lund University, Lund, Sweden
| | - Aino Korrensalo
- School of Forest Sciences, University of Eastern Finland, Joensuu, Finland
| | | | | | - Annalea Lohila
- Institute for Atmospheric and Earth System Research (INAR), University of Helsinki, Helsinki, Finland
- Finnish Meteorological Institute, Helsinki, Finland
| | - Magnus Lund
- Department of Bioscience, Aarhus University, Roskilde, Denmark
| | - Martin Maddison
- Department of Geography, University of Tartu, Tartu, Estonia
| | - Ivan Mammarella
- Natural Resources Institute Finland (Luke), Helsinki, Finland
| | - Ülo Mander
- Department of Geography, University of Tartu, Tartu, Estonia
| | - Kari Minkkinen
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Amy Pickard
- Centre for Ecology and Hydrology, Edinburgh, UK
| | - Johannes W M Pullens
- Department of Sustainable Agro-ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy
- Hydromet, Department of Civil and Environmental Engineering and Environmental Research Institute, University College Cork, Cork, Ireland
- Department of Agroecology, Aarhus University, Tjele, Denmark
| | | | - Mats B Nilsson
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Matthias Peichl
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
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Lõhmus K, Rosenvald K, Ostonen I, Kukumägi M, Uri V, Tullus A, Aosaar J, Varik M, Kupper P, Torga R, Maddison M, Soosaar K, Sõber J, Mander Ü, Kaasik A, Sõber A. Elevated atmospheric humidity shapes the carbon cycle of a silver birch forest ecosystem: A FAHM study. Sci Total Environ 2019; 661:441-448. [PMID: 30677689 DOI: 10.1016/j.scitotenv.2019.01.160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Revised: 01/07/2019] [Accepted: 01/13/2019] [Indexed: 06/09/2023]
Abstract
Processes determining the carbon (C) balance of a forest ecosystem are influenced by a number of climatic and environmental factors. In Northern Europe, a rise in atmospheric humidity and precipitation is predicted. The study aims to ascertain the effect of elevated atmospheric humidity on the components of the C budget and on the C-sequestration capacity of a young birch forest. Biomass production, soil respiration, and other C fluxes were measured in young silver birch (Betula pendula Roth) stands growing on the Free Air Humidity Manipulation (FAHM) experimental site, located in South-East Estonia. The C input fluxes: C sequestration in trees and understory, litter input into soil, and methane oxidation, as well as C output fluxes: soil heterotrophic respiration and C leaching were estimated. Humidified birch stands stored C from the atmosphere, but control stands can be considered as C neutral. Two years of elevated air humidity increased C sequestration in the understory but decreased it in trees. Humidification treatment increased remarkably the C input to the soil. The main reason for such an increase was the higher root litter input into the soil, brought about by the more than two-fold increase of belowground biomass production of the understory in the humidification treatment. Elevated atmospheric humidity increased C sequestration in young silver birch stands, mitigating increasing CO2 concentration in the atmosphere. However, the effect of elevated atmospheric humidity is expected to decrease over time, as plants and soil organisms acclimate, and new communities emerge.
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Affiliation(s)
- K Lõhmus
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - K Rosenvald
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia.
| | - I Ostonen
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - M Kukumägi
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - V Uri
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Kreutzwaldi 5, Tartu 51014, Estonia
| | - A Tullus
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - J Aosaar
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Kreutzwaldi 5, Tartu 51014, Estonia
| | - M Varik
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Kreutzwaldi 5, Tartu 51014, Estonia
| | - P Kupper
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - R Torga
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - M Maddison
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - K Soosaar
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - J Sõber
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - Ü Mander
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - A Kaasik
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
| | - A Sõber
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu 51005, Estonia
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Espenberg M, Truu M, Mander Ü, Kasak K, Nõlvak H, Ligi T, Oopkaup K, Maddison M, Truu J. Differences in microbial community structure and nitrogen cycling in natural and drained tropical peatland soils. Sci Rep 2018; 8:4742. [PMID: 29549345 PMCID: PMC5856767 DOI: 10.1038/s41598-018-23032-y] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 03/06/2018] [Indexed: 01/02/2023] Open
Abstract
Tropical peatlands, which play a crucial role in the maintenance of different ecosystem services, are increasingly drained for agriculture, forestry, peat extraction and human settlement purposes. The present study investigated the differences between natural and drained sites of a tropical peatland in the community structure of soil bacteria and archaea and their potential to perform nitrogen transformation processes. The results indicate significant dissimilarities in the structure of soil bacterial and archaeal communities as well as nirK, nirS, nosZ, nifH and archaeal amoA gene-possessing microbial communities. The reduced denitrification and N2-fixing potential was detected in the drained tropical peatland soil. In undisturbed peatland soil, the N2O emission was primarily related to nirS-type denitrifiers and dissimilatory nitrate reduction to ammonium, while the conversion of N2O to N2 was controlled by microbes possessing nosZ clade I genes. The denitrifying microbial community of the drained site differed significantly from the natural site community. The main reducers of N2O were microbes harbouring nosZ clade II genes in the drained site. Additionally, the importance of DNRA process as one of the controlling mechanisms of N2O fluxes in the natural peatlands of the tropics revealed from the results of the study.
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Affiliation(s)
- Mikk Espenberg
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia.
| | - Marika Truu
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
| | - Ülo Mander
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
| | - Kuno Kasak
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
| | - Hiie Nõlvak
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
| | - Teele Ligi
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
| | - Kristjan Oopkaup
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
| | - Martin Maddison
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
| | - Jaak Truu
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, 46 Vanemuise Street, 51014, Tartu, Estonia
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Espenberg M, Truu M, Truu J, Maddison M, Nõlvak H, Järveoja J, Mander Ü. Impact of Reed Canary Grass Cultivation and Mineral Fertilisation on the Microbial Abundance and Genetic Potential for Methane Production in Residual Peat of an Abandoned Peat Extraction Area. PLoS One 2016; 11:e0163864. [PMID: 27684377 PMCID: PMC5042519 DOI: 10.1371/journal.pone.0163864] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Accepted: 09/15/2016] [Indexed: 12/19/2022] Open
Abstract
This study examined physiochemical conditions and prokaryotic community structure (the bacterial and archaeal 16S rRNA genes and mcrA gene abundances and proportions), and evaluated the effect of reed canary grass cultivation and mineral fertilisation on these factors, in the 60 cm thick residual peat layer of experimental plots located on an abandoned peat extraction area. The archaeal proportion was 0.67-39.56% in the prokaryotic community and the methanogens proportion was 0.01-1.77% in the archaeal community. When bacterial abundance was higher in the top 20 cm of peat, the archaea were more abundant in the 20-60 cm layer and methanogens in the 40-60 cm layer of the residual peat. The bacterial abundance was significantly increased, but archaeal abundance was not affected by cultivation. The fertiliser application had a slight effect on peat properties and on archaeal and methanogen abundances in the deeper layer of cultivated peat. The CH4 emission was positively related to mcrA abundance in the 20-60 cm of the bare peat, while in case of reed canary grass cultivation these two parameters were not correlated. Reed canary grass cultivation mitigated CH4 emission, although methanogen abundance remained approximately the same or even increased in different layers of residual peat under cultivated sites over time. This study supports the outlook of using abandoned peat extraction areas to produce reed canary grass for energy purposes as an advisable land-use practice from the perspective of atmospheric impact in peatland-rich Northern Europe.
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Affiliation(s)
- Mikk Espenberg
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
- * E-mail:
| | - Marika Truu
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jaak Truu
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Maddison
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Hiie Nõlvak
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Järvi Järveoja
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Ülo Mander
- Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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Mander Ü, Maddison M, Soosaar K, Teemusk A, Kanal A, Uri V, Truu J. The impact of a pulsing groundwater table on greenhouse gas emissions in riparian grey alder stands. Environ Sci Pollut Res Int 2015; 22:2360-2371. [PMID: 25124475 DOI: 10.1007/s11356-014-3427-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2014] [Accepted: 08/07/2014] [Indexed: 06/03/2023]
Abstract
Floods control greenhouse gas (GHG) emissions in floodplains; however, there is a lack of data on the impact of short-term events on emissions. We studied the short-term effect of changing groundwater (GW) depth on the emission of (GHG) carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) in two riparian grey alder (Alnus incana) stands of different age in Kambja, southern Estonia, using the opaque static chamber (five replicates in each site) and gas chromatography methods. The average carbon and total nitrogen content in the soil of the old alder (OA) stand was significantly higher than in the young alder (YA) stand. In both stands, one part was chosen for water table manipulation (Manip) and another remained unchanged with a stable and deeper GW table. Groundwater table manipulation (flooding) significantly increases CH4 emission (average: YA-Dry 468, YA-Manip 8,374, OA-Dry 468, OA-Manip 4,187 μg C m(-2) h(-1)) and decreases both CO2 (average: OA-Dry 138, OA-Manip 80 mg C m(-2) h(-1)) and N2O emissions (average: OA-Dry 23.1, OA-Manip 11.8 μg N m(-2) h(-1)) in OA sites. There was no significant difference in CO2 and CH4 emissions between the OA and YA sites, whereas in OA sites with higher N concentration in the soil, the N2O emission was significantly higher than at the YA sites. The relative CO2 and CH4 emissions (the soil C stock-related share of gaseous losses) were higher in manipulated plots showing the highest values in the YA-Manip plot (0.03 and 0.0030 % C day(-1), respectively). The soil N stock-related N2O emission was very low achieving 0.000019 % N day(-1) in the OA-Dry plot. Methane emission shows a negative correlation with GW, whereas the 20 cm depth is a significant limit below which most of the produced CH4 is oxidized. In terms of CO2 and N2O, the deeper GW table significantly increases emission. In riparian zones of headwater streams, the short-term floods (e.g. those driven by extreme climate events) may significantly enhance methane emission whereas the long-term lowering of the groundwater table is a more important initiator of N2O fluxes from riparian gley soils than flood pulses.
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Affiliation(s)
- Ülo Mander
- Institute of Ecology and Earth Sciences, University of Tartu, 51014, Tartu, Estonia,
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Mander U, Well R, Weymann D, Soosaar K, Maddison M, Kanal A, Lõhmus K, Truu J, Augustin J, Tournebize J. Isotopologue ratios of N2O and N2 measurements underpin the importance of denitrification in differently N-loaded riparian alder forests. Environ Sci Technol 2014; 48:11910-11918. [PMID: 25264900 DOI: 10.1021/es501727h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Known as biogeochemical hotspots in landscapes, riparian buffer zones exhibit considerable potential concerning mitigation of groundwater contaminants such as nitrate, but may in return enhance the risk for indirect N2O emission. Here we aim to assess and to compare two riparian gray alder forests in terms of gaseous N2O and N2 fluxes and dissolved N2O, N2, and NO3(-) in the near-surface groundwater. We further determine for the first time isotopologue ratios of N2O dissolved in the riparian groundwater in order to support our assumption that it mainly originated from denitrification. The study sites, both situated in Estonia, northeastern Europe, receive contrasting N loads from adjacent uphill arable land. Whereas N2O emissions were rather small at both sites, average gaseous N2-to-N2O ratios inferred from closed-chamber measurements and He-O laboratory incubations were almost four times smaller for the heavily loaded site. In contrast, groundwater parameters were less variable among sites and between landscape positions. Campaign-based average (15)N site preferences of N2O (SP) in riparian groundwater ranged between 11 and 44 ‰. Besides the strong prevalence of N2 emission over N2O fluxes and the correlation pattern between isotopologue and water quality data, this comparatively large range highlights the importance of denitrification and N2O reduction in both riparian gray alder stands.
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Affiliation(s)
- Ulo Mander
- Institute of Ecology and Earth Sciences, University of Tartu , 51014 Tartu, Estonia
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Nangalia J, Massie CE, Baxter EJ, Nice FL, Gundem G, Wedge DC, Avezov E, Li J, Kollmann K, Kent DG, Aziz A, Godfrey AL, Hinton J, Martincorena I, Van Loo P, Jones AV, Guglielmelli P, Tarpey P, Harding HP, Fitzpatrick JD, Goudie CT, Ortmann CA, Loughran SJ, Raine K, Jones DR, Butler AP, Teague JW, O'Meara S, McLaren S, Bianchi M, Silber Y, Dimitropoulou D, Bloxham D, Mudie L, Maddison M, Robinson B, Keohane C, Maclean C, Hill K, Orchard K, Tauro S, Du MQ, Greaves M, Bowen D, Huntly BJP, Harrison CN, Cross NCP, Ron D, Vannucchi AM, Papaemmanuil E, Campbell PJ, Green AR. Somatic CALR mutations in myeloproliferative neoplasms with nonmutated JAK2. N Engl J Med 2013; 369:2391-2405. [PMID: 24325359 PMCID: PMC3966280 DOI: 10.1056/nejmoa1312542] [Citation(s) in RCA: 1333] [Impact Index Per Article: 121.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
BACKGROUND Somatic mutations in the Janus kinase 2 gene (JAK2) occur in many myeloproliferative neoplasms, but the molecular pathogenesis of myeloproliferative neoplasms with nonmutated JAK2 is obscure, and the diagnosis of these neoplasms remains a challenge. METHODS We performed exome sequencing of samples obtained from 151 patients with myeloproliferative neoplasms. The mutation status of the gene encoding calreticulin (CALR) was assessed in an additional 1345 hematologic cancers, 1517 other cancers, and 550 controls. We established phylogenetic trees using hematopoietic colonies. We assessed calreticulin subcellular localization using immunofluorescence and flow cytometry. RESULTS Exome sequencing identified 1498 mutations in 151 patients, with medians of 6.5, 6.5, and 13.0 mutations per patient in samples of polycythemia vera, essential thrombocythemia, and myelofibrosis, respectively. Somatic CALR mutations were found in 70 to 84% of samples of myeloproliferative neoplasms with nonmutated JAK2, in 8% of myelodysplasia samples, in occasional samples of other myeloid cancers, and in none of the other cancers. A total of 148 CALR mutations were identified with 19 distinct variants. Mutations were located in exon 9 and generated a +1 base-pair frameshift, which would result in a mutant protein with a novel C-terminal. Mutant calreticulin was observed in the endoplasmic reticulum without increased cell-surface or Golgi accumulation. Patients with myeloproliferative neoplasms carrying CALR mutations presented with higher platelet counts and lower hemoglobin levels than patients with mutated JAK2. Mutation of CALR was detected in hematopoietic stem and progenitor cells. Clonal analyses showed CALR mutations in the earliest phylogenetic node, a finding consistent with its role as an initiating mutation in some patients. CONCLUSIONS Somatic mutations in the endoplasmic reticulum chaperone CALR were found in a majority of patients with myeloproliferative neoplasms with nonmutated JAK2. (Funded by the Kay Kendall Leukaemia Fund and others.).
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Maddison M, Soosaar K, Lõhmus K, Mander U. Cattail population in wastewater treatment wetlands in Estonia: biomass production, retention of nutrients, and heavy metals in phytomass. J Environ Sci Health A Tox Hazard Subst Environ Eng 2005; 40:1157-66. [PMID: 15921272 DOI: 10.1081/ese-200055624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
The aim of this article is to evaluate and compare common cattail (Typha latifolia) biomass production and annual accumulation of nitrogen, phosphorus, carbon, and heavy metals (Cd, Cu, Pb, Zn) in phytomass in 3 treatment wetland systems in Estonia. The biomass samples (roots/rhizomes, shoots with leaves, and spadixes) and litter were collected from 1 x 1 m plots--15 plots in Tänassilma seminatural wetland, 15 plots in Põltsamaa constructed wetland, and 10 plots in Häädemeeste constructed wetland. The highest average total cattail phytomass was 2.54 kg DW m(-2) in Häädemeeste. In Tänassilma and Põltsamaa this value was 2.3 and 2.11 kg DW m(-2), respectively. The average total aboveground biomass production and roots/rhizomes phytomass was not significantly different in three studied wetland systems. We have found significantly less spadixes and litter in Tänassilma than in Põltsamaa and Häädemeeste. In Põltsamaa, the N and P content in all plant fractions were higher than in other test areas. The Cd concentration in all samples (shoots, spadixes, litter) varied from < 0.01 to < 0.02 mg/kg. The average concentration of Zn in litter varied from 12.2 mg kg(-1) in Häädemeeste to 12.6 mg kg(-1) in Tänassilma and 13.3 mg kg(-1) in Põltsamaa. There has been found a significantly higher average contents of Cu (39.3 mg kg(-1)), Pb (30.4 mg kg(-1)), and Zn (412.3 mg kg(-1)) in Tänassilma than those in Häädemeeste or Põltsamaa: Cu-11.6 and 15.9, Pb--2.3 and 3.3, and Zn--57.5 and 73.2 mg kg(-1), respectively. The highest heavy metal retention (303.2 mg Pb m(-2), 29.4 mg Zn m(-)2, 22.9 mg Cu m(-2), and 0.35 mg Cd m(-2)) was observed in root and rhizome samples from the Tänassilma wetland.
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Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C, Barrell BG. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Nature 2002; 419:527-31. [PMID: 12368867 DOI: 10.1038/nature01095] [Citation(s) in RCA: 128] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2002] [Accepted: 09/02/2002] [Indexed: 02/07/2023]
Abstract
Since the sequencing of the first two chromosomes of the malaria parasite, Plasmodium falciparum, there has been a concerted effort to sequence and assemble the entire genome of this organism. Here we report the sequence of chromosomes 1, 3-9 and 13 of P. falciparum clone 3D7--these chromosomes account for approximately 55% of the total genome. We describe the methods used to map, sequence and annotate these chromosomes. By comparing our assemblies with the optical map, we indicate the completeness of the resulting sequence. During annotation, we assign Gene Ontology terms to the predicted gene products, and observe clustering of some malaria-specific terms to specific chromosomes. We identify a highly conserved sequence element found in the intergenic region of internal var genes that is not associated with their telomeric counterparts.
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Affiliation(s)
- N Hall
- The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
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Affiliation(s)
- J. Atherton
- Royal National Hospital for Rheumatic Diseases, Upper Borough Walls, Bath BA11RL
| | - A. K. Clarke
- Royal National Hospital for Rheumatic Diseases, Upper Borough Walls, Bath BA11RL
| | - R. A. Harrison
- Royal National Hospital for Rheumatic Diseases, Upper Borough Walls, Bath BA11RL
| | - M. Maddison
- Royal National Hospital for Rheumatic Diseases, Upper Borough Walls, Bath BA11RL
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Maddison M. Consumer survey of paediatric wards. Australas Nurses J 1977; 6:27-8. [PMID: 242535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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