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Lu J, Yang Y, Hong EK, Yin X, Wang X, Wang Y, Zhang D. Analyzing the structure-activity relationship of raspberry polysaccharides using interpretable artificial neural network model. Int J Biol Macromol 2024; 264:130354. [PMID: 38403223 DOI: 10.1016/j.ijbiomac.2024.130354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 02/06/2024] [Accepted: 02/19/2024] [Indexed: 02/27/2024]
Abstract
The structure-activity relationship has been a hot topic in the field of polysaccharide research. Six polysaccharides and three polysaccharide fragments were obtained from raspberry pulp. Based on their structural information and immune-enhancing activity data, an artificial neural network (ANN) model was used for prediction, and Gradient-weighted class activation mapping (Grad-CAM) algorithm was exploited for explanation structure-activity relationship of these raspberry polysaccharides in the present study. The structural information and immune activity data of raspberry polysaccharides were respectively used as input and output in the ANN model. The training and testing losses of ANN model was no longer decreased after trained for 200 epochs. The mean-square error (MSE) of training set and test set stabilized around 0.003 and 0.013, and the mean absolute percentage error (MAPE) of training set and test set were 0.21 % and 0.98 %, indicating the trained ANN model converged well and exhibited strong robustness. The interpretability analysis showed that molecular weight, content of arabinose, galactose or galacturonic acid, and glycosyl linkage patterns of →3)-Arap-(1→, Araf-(1→, →4)-Galp-(1 → were the main structural factors greatly affecting the immune-enhancing activity of raspberry polysaccharides. This work may provide a new perspective for the study of structure-activity relationship of polysaccharides.
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Affiliation(s)
- Jie Lu
- School of Ecological and Environmental Engineering, Qinghai University, Xining 810016, China
| | - Yongjing Yang
- School of Ecological and Environmental Engineering, Qinghai University, Xining 810016, China.
| | - Eun-Kyung Hong
- Medvill Co., Ltd. Medvill Research Institute, Seoul 08512, Republic of Korea
| | - Xingxing Yin
- School of Ecological and Environmental Engineering, Qinghai University, Xining 810016, China.
| | - Xuehong Wang
- School of Ecological and Environmental Engineering, Qinghai University, Xining 810016, China
| | - Yuting Wang
- School of Ecological and Environmental Engineering, Qinghai University, Xining 810016, China
| | - Dejun Zhang
- School of Ecological and Environmental Engineering, Qinghai University, Xining 810016, China.
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Abarova S, Alexova R, Dragomanova S, Solak A, Fagone P, Mangano K, Petralia MC, Nicoletti F, Kalfin R, Tancheva L. Emerging Therapeutic Potential of Polyphenols from Geranium sanguineum L. in Viral Infections, Including SARS-CoV-2. Biomolecules 2024; 14:130. [PMID: 38275759 PMCID: PMC10812934 DOI: 10.3390/biom14010130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/15/2024] [Accepted: 01/16/2024] [Indexed: 01/27/2024] Open
Abstract
The existing literature supports the anti-inflammatory, antioxidant, and antiviral capacities of the polyphenol extracts derived from Geranium sanguineum L. These extracts exhibit potential in hindering viral replication by inhibiting enzymes like DNA polymerase and reverse transcriptase. The antiviral properties of G. sanguineum L. seem to complement its immunomodulatory effects, contributing to infection resolution. While preclinical studies on G. sanguineum L. suggest its potential effectiveness against COVID-19, there is still a lack of clinical evidence. Therefore, the polyphenols extracted from this herb warrant further investigation as a potential alternative for preventing and treating COVID-19 infections.
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Affiliation(s)
- Silviya Abarova
- Department of Medical Physics and Biophysics, Faculty of Medicine, Medical University of Sofia, Zdrave Str. 2, 1431 Sofia, Bulgaria;
| | - Ralitza Alexova
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine, Medical University of Sofia, Zdrave Str. 2, 1431 Sofia, Bulgaria
| | - Stela Dragomanova
- Department of Pharmacology, Toxicology and Pharmacotherapy, Faculty of Pharmacy, Medical University of Varna, Tsar Osvoboditel Blvd 84A, 9002 Varna, Bulgaria;
| | - Ayten Solak
- Institute of Cryobiology and Food Technologies, Cherni Vrah Blvd. 53, 1407 Sofia, Bulgaria;
| | - Paolo Fagone
- Department of Biomedical and Biotechnological Sciences, University of Catania, Via S. Sofia 89, 95123 Catania, Italy
| | - Katia Mangano
- Department of Biomedical and Biotechnological Sciences, University of Catania, Via S. Sofia 89, 95123 Catania, Italy
| | - Maria Cristina Petralia
- Department of Clinical and Experimental Medicine, University of Messina, 98122 Messina, Italy
| | - Ferdinando Nicoletti
- Department of Biomedical and Biotechnological Sciences, University of Catania, Via S. Sofia 89, 95123 Catania, Italy
| | - Reni Kalfin
- Department of Biological Effects of Natural and Synthetic Substances, Bulgarian Academy of Sciences, Acad. Georgi Bonchev Str. 23, 1113 Sofia, Bulgaria; (R.K.); (L.T.)
- Department of Healthcare, South-West University “Neofit Rilski”, Ivan Mihailov Str. 66, 2700 Blagoevgrad, Bulgaria
| | - Lyubka Tancheva
- Department of Biological Effects of Natural and Synthetic Substances, Bulgarian Academy of Sciences, Acad. Georgi Bonchev Str. 23, 1113 Sofia, Bulgaria; (R.K.); (L.T.)
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Danova S, Yankov D, Dobreva L, Dobreva A, Armenova N, Apostolov A, Mileva M. Postbiotics Production of Candidate-Probiotic Lactiplantibacillus plantarum AC131 with Renewable Bio Resources. Life (Basel) 2023; 13:2006. [PMID: 37895388 PMCID: PMC10608073 DOI: 10.3390/life13102006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 09/23/2023] [Accepted: 09/28/2023] [Indexed: 10/29/2023] Open
Abstract
Lactiplantibacillus plantarum is a versatile specie, well known as a producer of lactic acid (LA) and other metabolites with biotechnological significance. The present work characterizes growth and lactic acid production of the candidate-probiotic strain L. plantarum AC131, from Bulgarian white brined cheeses. Different nutritional media with ingredients from renewable resources-reduced sugars from dried distillers' grains with soluble (DDGS) and waste waters from the water-vapor distillation of Bulgarian Rosa alba L. and Rosa damascena Mill. essential oil-were assessed. The results obtained showed significant LA production (up to 95% conversion) in modified MRS broth with reducing sugars from DDGS hydrolysates. The addition of R. alba L. and R. damascena Mill. distillation effluents stimulated the growth and biological activity of postbiotics produced by L. plantarum AC131. In both experimental approaches, a statistically significant inhibition (from 20 to 60%) of E. coli HB 101 growth was found during 24 h exposure and a variable effect on the biofilm formed. In conclusion, reducing sugars from DDGS hydrolysates can be successfully used as a carbon source for lactic acid production. In the case of fermentation without pH control, the process is product inhibited, while with pH control, nearly full conversion was achieved. Postbiotics produced during the process of fermentation showed a variety of biological activity and inhibitory effects on the growth of Escherichia coli HB 101.
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Affiliation(s)
- Svetla Danova
- Institute of Microbiology “Stephan Angeloff” Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria; (S.D.); (L.D.)
| | - Dragomir Yankov
- Institute of Chemical Engineering, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria; (D.Y.); (N.A.); (A.A.)
| | - Lili Dobreva
- Institute of Microbiology “Stephan Angeloff” Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria; (S.D.); (L.D.)
| | - Ana Dobreva
- Institute for Roses and Aromatic Plants, Agriculture Academy, 6100 Kazanlak, Bulgaria;
| | - Nadya Armenova
- Institute of Chemical Engineering, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria; (D.Y.); (N.A.); (A.A.)
| | - Apostol Apostolov
- Institute of Chemical Engineering, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria; (D.Y.); (N.A.); (A.A.)
| | - Milka Mileva
- Institute of Microbiology “Stephan Angeloff” Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria; (S.D.); (L.D.)
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Yuan S, Wang J, Li X, Zhu X, Zhang Z, Li D. Study on the structure, antioxidant activity and degradation pattern of polysaccharides isolated from lotus seedpod. Carbohydr Polym 2023; 316:121065. [PMID: 37321745 DOI: 10.1016/j.carbpol.2023.121065] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 05/20/2023] [Accepted: 05/24/2023] [Indexed: 06/17/2023]
Abstract
The lotus (Nelumbo nucifera Gaertn.) is the largest aquatic vegetable in Asia. The lotus seedpod (LS) is an inedible part of the mature flower receptacle of the lotus plant. However, the polysaccharide isolated from the receptacle has been less studied. The purification of LS resulted in two polysaccharides (LSP-1 and LSP-2). Both polysaccharides were found to be medium-sized HG pectin, with a Mw of 74 kDa. Their structures were elucidated via GC-MS and NMR spectrum and proposed as the repeating sugar units of GalA connected via α-1,4-glycosidic linkage, with LSP-1 having a higher degree of esterification. They have certain content of antioxidant and immunomodulatory activities. The esterification of HG pectin would have an adverse effect on these activities. Furthermore, the degradation pattern and kinetics of LSPs by pectinase conformed to the Michaelis-Menten model. There is a large amount of LS, resulting from the by-product of locus seed production, and thus a promising source for the isolation of the polysaccharide. The findings of the structure, bioactivities, and degradation property provide the chemical basis for their applications in the food and pharmaceutical industries.
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Affiliation(s)
- Shuwei Yuan
- Pharmacy Department, Children's Hospital of Soochow University, Suzhou 215123, PR China; College of Pharmaceutical Science, Soochow University, Suzhou 215123, PR China.
| | - Jiahui Wang
- College of Pharmaceutical Science, Soochow University, Suzhou 215123, PR China
| | - Xiang Li
- College of Pharmaceutical Science, Soochow University, Suzhou 215123, PR China
| | - Xun Zhu
- Jiangsu R&D Center of the Intelligent Agricultural Equipment, Yancheng Polytechnic College, Yancheng 224005, PR China.
| | - Zhenqing Zhang
- College of Pharmaceutical Science, Soochow University, Suzhou 215123, PR China
| | - Duxin Li
- College of Pharmaceutical Science, Soochow University, Suzhou 215123, PR China; Academy of Plateau Science and Sustainability, Qinghai Normal University, Xining 810016, PR China.
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Extraction, purification and structural characterization of polysaccharides from Apocynum venetum L. roots with anti-inflammatory activity. Process Biochem 2022. [DOI: 10.1016/j.procbio.2022.06.035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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