Investigation of physico-chemical properties and microbial community during poultry manure co-composting process

Ammonia assimilation is key for the preservation of nitrogen during industrial-scale composting of chicken manure

Nitrogen loss from compost is a serious concern, causing severe environmental pollution. The NH4+-N content reflects the release of NH3. However, the nitrogen conversion pathway that has the greatest impact on NH4+-N content is still unclear. This study attempted to explore the key pathways, core functional microorganisms, and mechanisms involved in the transformation of ammonia nitrogen during composting. KEGG (Kyoto Encyclopedia of Genes and Genomes) metabolic pathways revealed that ammonia assimilation was dominated by the glutamate dehydrogenase (GDH) pathway (53.4%), which is crucial for nitrogen preservation. The combined analysis of KEGG, NR species annotation, and co-occurrence network identified 20 easy-to-regulate obligate core nitrogen-transforming functional microorganisms, including 18 ammonia-assimilating bacteria. Furthermore, the effects of environmental parameters on the obligate core functional microorganisms were investigated. The present study results provided a theoretical basis for the utilization of ten ammonia-assimilating bacteria, such as Paenibacillus, Erysipelatoclostridium, and Defluviimonas to improve the quality of compost.

Effect of diaper waste on composting of household wet biodegradable waste in a decentralized system

Due to changes in lifestyle and improved economic status, the use of diapers is also increasing in developing nations. Hence, there is a need to develop an eco-friendly system for the disposal of discarded diapers which is termed diaper waste (DW). In the present study, the co-composting of DW with household wet biodegradable waste (HWBW) was performed in a compartmentalized rotary drum (CRD) (total capacity = 160 L, number of compartments = 4) under passive aeration conditions. For the co-composting runs, 1 kg of HWBW and DW mixture (mass ratio = 100:0, 90:10, 85:15, and 80:20) was added in four individual compartments daily for 10 days. During the process, the highest temperature of ~ 50-56 °C could be achieved in different compartments for a duration of 2-8 days. The compost yield (i.e., below 4 mm size material) was ranged 10.4-13% after 55 days of composting and the mass of DW was reduced by ~ 61-68%. A mixture of 15% DW and 85% HWBW can be suggested as the best combination for the co-composting process. Based on the "Dewar test" results, the samples recovered after composting could be categorized as "stable". The pot results showed an improvement in the growth of Vigna Radiata when 10% compost sample was mixed with soil whereas with 20% compost in the soil-compost mixture, the plant growth was adversely affected. Hence, co-composting of DW with HWBW can be a feasible proposition which can produce a good quality compost.

Magnesium-enriched poultry manure enhances phosphorus bioavailability in biochars

Pyrolysis of calcium-rich feedstock (e.g., poultry manure) generates semi-crystalline and crystalline phosphorus (P) species, compromising its short-term availability to plants. However, enriching poultry manure with magnesium (Mg) before pyrolysis may improve the ability of biochar to supply P. This study investigated how increasing the Mg/Ca ratio and pyrolysis temperature of poultry manure affected its P availability and speciation. Mg enrichment by ∼2.1% increased P availability (extracted using 2% citric and formic acid) by 20% in Mg-biochar at pyrolysis temperatures up to 600 °C. Linear combination fitting of P K-edge XANES of biochar, and Mg/Ca stoichiometry, indicate that P species, mainly Ca-P and Mg-P, are altered after pyrolysis. At 300 °C, adding Mg as magnesium hydroxide [Mg(OH)₂] created MgNH₄PO₄ (18%) and Mg₃(PO₄)₂.8H₂O (23%) in the biochar, while without addition of Mg Ca₃(PO₄)₂ (11%) predominated, both differing only for pyrophosphate, 33 and 16%, respectively. Similarly, the P L_2,3 edge XANES data of biochar made with Mg were indicative of either MgHPO₄.3H₂O or Mg₃(PO₄)₂.8H₂O, in comparison to CaHPO₄.2H₂O or Ca₃(PO₄)₂ without Mg. More importantly, hydroxyapatite [Ca₅(PO₄)₃(OH)] was not identified with Mg additions, while it was abundant in biochars produced without Mg both at 600 (12%) and 700 °C (32%). The presence of Mg formed Mg-P minerals that could enhance P mobility in soil more than Ca-P, and may have resulted in greater P availability in Mg-enriched biochars. Thus, a relatively low Mg enrichment can be an approach for designing and optimize biochar as a P fertilizer from P-rich excreta, with the potential to improve P availability and contribute to the sustainable use of organic residues.

Effects of residual monensin in livestock manure on nitrogen transformation and microbial community during "crop straw feeding-substrate fermentation-mushroom cultivation" recycling system

Although crop-livestock integration recycling systems improve nitrogen (N) utilization in agroecosystems, there are limited studies regarding impacts of residual antibiotics in livestock manure on N transformation in entire recycling system. The objective was to evaluate effects of feeding monensin on N recycling during "straw feeding-substrate fermentation-mushroom cultivation". This experiment contained 3 steps. During straw feeding, beef cattle were allocated into 2 groups and fed diets with or without monensin, respectively. During fermentation, beef cattle manure (with or without monensin) and straw (corn or wheat) and were co-fermented for 35 d to produce substrates. During cultivation, Agaricus bisporus was cultivated on 4 substrates to recycle N in the form of mushrooms. Rates of N retention during fermentation were significant higher for monensin and corn straw treatments and there was an significant interaction between straw and antibiotic on N retention rate during cultivation. However, residual monensin significantly reduced amount of recycled N during entire recycling system, due to changes in N transformation-associated enzyme activity, ammonification and denitrification plus microbial community structure and succession. Specifically, residual monensin inhibited growth of dominant bacterial phylum Bacteroidetes and fungal phylum Neocallimastigomycota, and increased bacterial phylla Actinobacteriota and Firmicutes. These alterations in functional microbes increased N retention rates but reduced mushroom yields in antibiotic treatments during cultivation. In conclusion, monensin decreased the N recycling rate in recycling system, but also reduced N losses during fermentation by inhibiting ammonification and denitrification, so, avoiding antibiotics usage is an effective strategy to improve the efficiency of recycling systems.

Metagenomic Insights Into the Changes of Antibiotic Resistance and Pathogenicity Factor Pools Upon Thermophilic Composting of Human Excreta

In times of climate change, practicing a form of sustainable, climate-resilient and productive agriculture is of primordial importance. Compost could be one form of sustainable fertilizer, which is increasing humus, water holding capacity, and nutrient contents of soils. It could thereby strengthen agriculture toward the adverse effects of climate change, especially when additionally combined with biochar. To get access to sufficient amounts of suitable materials for composting, resources, which are currently treated as waste, such as human excreta, could be a promising option. However, the safety of the produced compost regarding human pathogens, pharmaceuticals (like antibiotics) and related resistance genes must be considered. In this context, we have investigated the effect of 140- and 154-days of thermophilic composting on the hygienization of human excreta and saw dust from dry toilets together with straw and green cuttings with and without addition of biochar. Compost samples were taken at the beginning and end of the composting process and metagenomic analysis was conducted to assess the fate of antibiotic resistance genes (ARGs) and pathogenicity factors of the microbial community over composting. Potential ARGs conferring resistance to major classes of antibiotics, such as beta-lactam antibiotics, vancomycin, the MLS_B group, aminoglycosides, tetracyclines and quinolones were detected in all samples. However, relative abundance of ARGs decreased from the beginning to the end of composting. This trend was also found for genes encoding type III, type IV, and type VI secretion systems, that are involved in pathogenicity, protein effector transport into eukaryotic cells and horizontal gene transfer between bacteria, respectively. The results suggest that the occurrence of potentially pathogenic microorganisms harboring ARGs declines during thermophilic composting. Nevertheless, ARG levels did not decline below the detection limit of quantitative PCR (qPCR). Thresholds for the usage of compost regarding acceptable resistance gene levels are yet to be evaluated and defined.

Organic/inorganic amendments for the remediation of a red paddy soil artificially contaminated with different cadmium levels: Leaching, speciation, and phytoavailability tests

In the present study, the viability of using manure (M), lime (L), and sepiolite (S) alone and in combinations (M/L, M/S, and M/L/S) was evaluated for the remediation of a red paddy soil artificially contaminated with three levels of cadmium (Cd- 0.6, 1, and 2 mg kg^-1 soil). Experiments were performed in columns (to evaluate Cd leaching) and pots by growing rice plants (to study Cd accumulation in plants). Before their application, the tested amendments were thoroughly characterized using SEM, EDS and FT-IR spectroscopy. The leaching experiment indicates that the application of L or M/L significantly improved the pH of soil leachate collected at different time intervals. However, the use of M/L/S was found better in decreasing the Cd contents in collected leachate. The use of M/L efficiently decreased the DTPA metal extraction (0.19, 0.41, and 0.55 mg kg^-1) as compared to the CK (0.35, 0.63, and 1.13 mg kg^-1, respectively). The Cd speciation results depicted a 33% decrease in exchangeable Cd with M/L/S treatment when compared with control (55%). Moreover, the M/L/S treatment was more efficient in lowering the Cd phytoavailability and subsequent accumulation in rice grains (0.05, 0.09, and 0.08 mg kg^-1). These findings demonstrate that the use of composite amendments is categorically effective as an in-situ remediation tool to decrease Cd leaching and availability in diverse contaminations.

Proliferation of antibiotic-resistant microorganisms and associated genes during composting: An overview of the potential impacts on public health, management and future

Antibiotic residues together with non-antibiotic drugs and heavy metals act as a selective pressure for the spread of antibiotic-resistant microorganisms (ARMs), antibiotic-resistant genes (ARGs), and mobile genetic elements (MGEs) during composting of livestock manure. ARMs, ARGs and MGEs have become emerging contaminants since they are regularly implicated in the majority of compost produced from livestock manure. The prevalence of these contaminants in agricultural soil receiving compost has drawn huge attention globally due to the risks they pose to the total environment. Although a large body of literature exists on the application of composting methods in minimizing the relative abundance of these contaminants, there is a paucity of information on the robustness, limitations and opportunities and threats of various composting protocols currently deployed. To address this knowledge gap, the current review compiled literature on the origin and mechanisms of the proliferation of ARMs, ARGs, and MGEs during composting of livestock manure. The effectiveness of current composting protocols in the reduction or removal of emerging contaminants was evaluated. Furthermore, the potential environmental impacts and human health risks of these contaminants following land application of compost were also presented. Finally, we propose some strategic approaches for the reduction of ARGs and MGEs during composting of livestock manure.

Thermogravimetry Applicability in Compost and Composting Research: A Review

Composting could be a suitable solution to the correct treatment and hygienization of several organic waste, producing compost that can be used in agriculture. The evolution and maturity of this process has been studied using a variety of techniques. One very promising technique for these studies is thermogravimetric analysis. On the other hand, the compost can be used for a variety of purposes different to the agricultural one, such as direct energy by combustion or energy and products by pyrolysis and its suitability can be measured by thermogravimetric techniques. With these goals, a bibliographic analysis has been done, applying Preferred Reporting Items for Systematic Reviews and Meta-Analyses PRISMA methodology, to the use of thermogravimetric equipment applied to the study of composting and compost uses. According to the methodology for PRISMA systematic reviews, the following databases have been searched Google Scholar, Web of Science, Mendeley, Microsoft Academic, World Wide Science, Science Direct, IEEE Xplore, Springer Link, Scopus, and PubMed by using the terms “thermogravimetry AND (compost OR composting) AND NOT plastic”.

In-feed antibiotic use changed the behaviors of oxytetracycline, sulfamerazine, and ciprofloxacin and related antibiotic resistance genes during swine manure composting

The dynamics of oxytetracycline (OTC), sulfamerazine (SM1), ciprofloxacin (CIP) and related antibiotic resistance genes (ARGs) during swine manure composting were compared between manure collected from swine fed a diet containing these three antibiotics (T_D) and manure directly spiked with these drugs (T_S). The composting removal efficiency of OTC (94.9 %) and CIP (87.8 %) in the T_D treatment was significantly higher than that of OTC (83.8 %, P <  0.01) and CIP (83.9 %, P <  0.05) in the T_S treatment, while SM1 exhibited no significant difference (P >  0.05) between the two treatments. Composting effectively reduced the majority of ARGs in both T_D and T_S types of manure, especially tetracycline resistance genes (TRGs). Compared with the T_S treatment, the abundance of some ARGs, such as tetG, qepA, sul1 and sul2, increased dramatically up to 309-fold in the T_D treatment. The microbial composition of the composting system changed significantly during composting due to antibiotic feeding. Redundancy analysis suggested that the abundance of ARGs had a considerable impact on alterations in the physicochemical parameters (C/N, pH and temperature) and bacterial communities (Actinobacteria, Proteobacteria and Firmicutes) during the composting of swine manure.

The applicability of gene sequencing and MALDI-TOF to identify less common gram-negative rods (Advenella, Castellaniella, Kaistia, Pusillimonas and Sphingobacterium) from environmental isolates

Our aim was to identify less common non-fermenting gram-negative rods during the bioremediation process. Five genera were found: Advenella, Castellaniella, Kaistia, Pusillimonas and Sphingobacterium, for a total of 15 isolates. Therefore, we evaluated the applicability of four methods currently available for bacteria identification: (1) conventional biochemical methods, (2) the VITEK^®-2 system, (3) MALDI-TOF mass spectrometry and (4) 16S rRNA gene sequencing. The biochemical methods and the VITEK^®-2 system were reliable only for the Sphingobacterium isolate and solely at the genus level. Both MALDI-TOF mass spectrometry platforms (Bruker and VITEK^® MS) did not achieve reliable identification results for any of these genera. 16S rRNA gene sequencing identified eight isolates to the species level but not to the subspecies level, when applicable. The remaining seven isolates were reliably identified through 16S rRNA gene sequencing to the genus level only. Our findings suggest that the detection and identification of less common genera (and species) that appeared at certain moments during the bioremediation process can be a challenge to microbiologists considering the most used techniques. In addition, more studies are required to confirm our results.

Treatment of smuggled cigarette tobacco by composting process in facultative reactors

This paper presents a study on the degradation of smuggled cigarette tobacco combined with domestic organic waste and sawdust or wood chips, using facultative reactor. Four reactors with different amounts of residue were assembled. For the study of the quality of the compost obtained, physicochemical, phytotoxicity and microbiological analyses were carried out. The mixture with wood chips presented the best temperature conditions and pH variation optimizing the degradation. The final germination index (GI) values of all treatments were above the recommended GI value (50%) and the final C/N ratio between 8 and 13 indicated a mature compost. The concentration of metals under study was below the limit allowed for the commercialization. The composting carried out in all facultative reactors provided ideal conditions for the total sterilization of the final compost. Therefore, the treatment of smuggled cigarettes through facultative reactors was efficient to produce stable and mature compost.

Co-composting of two-phase olive-mill pomace and poultry manure with tomato harvest stalks

In this study, two-phase olive-mill pomace with poultry manure and chopped tomato harvest stalks were composted at different initial carbon/nitrogen (C/N) ratios with fixed free air space of 35%. Composting experiment was carried out in the 15 aerobic reactors made of stainless steel and was monitored for 28 days. During the composting process, temperature, moisture content, organic matter (OM), pH, electrical conductivity, oxygen and carbon dioxide concentrations, total carbon, total nitrogen, ammonium nitrogen ([Formula: see text]), nitrate nitrogen ([Formula: see text]), and total phosphorus were monitored. Compost mass and volume changes were determined at the beginning, during remixings, and at the end of composting. While the stabilization period took less time for the mixtures containing a high amount of poultry manure, the mixtures having the high portion of two-phase olive-mill pomace took a longer time due to the structure of olive stone and its lignin content. Dry matter loss (range: 18.1-34.0%.) in the mixtures increased with an increase in the share of poultry manure and tomato stalks in the initial mixture. OM loss (range: 21.7-46.1%) for tomato stalks (measured separately) during composting increased due to an increase in the ratio of poultry manure in the initial mixtures.

Performance and microbial community of a membrane bioreactor system - Treating wastewater from ethanol fermentation of food waste

In this study, a lab-scale biological anaerobic/anaerobic/anoxic/membrane bioreactor (A³-MBR) was designed to treat wastewater from the ethanol fermentation of food waste, a promising way for the disposal of food waste and reclamation of resources. The 454 pyrosequencing technique was used to investigate the composition of the microbial community in the treatment system. The system yielded a stable effluent concentration of chemical oxygen demand (202±23mg/L), total nitrogen (62.1±7.1mg/L), ammonia (0.3±0.13mg/L) and total phosphorus (8.3±0.9mg/L), and the reactors played different roles in specific pollutant removal. The exploration of the microbial community in the system revealed that: (1) the microbial diversity of anaerobic reactors A₁ and A₂, in which organic pollutants were massively degraded, was much higher than that in anoxic A₃ and aerobic MBR; (2) although the community composition in each reactor was quite different, bacteria assigned to the classes Clostridia, Bacteroidia, and Synergistia were important and common microorganisms for organic pollutant degradation in the anaerobic units, and bacteria from Alphaproteobacteria and Betaproteobacteria were the dominant microbial population in A₃ and MBR; (3) the taxon identification indicated that Arcobacter in the anaerobic reactors and Thauera in the anoxic reactor were two representative genera in the biological process. Our results proved that the biological A³-MBR process is an alternative technique for treating wastewater from food waste.

Enhanced antibiotic removal by the addition of bamboo charcoal during pig manure composting

The addition of bamboo charcoal during pig manure composting enhanced the depletion of antibiotics, ciprofloxacin, chlorotetracycline, and norfloxacin.