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Liu C, Guo D, Wen S, Dang Y, Sun D, Li P. Transcriptomic insights unveil the crucial roles of cytochromes, NADH, and pili in Ag(I) reduction by Geobacter sulfurreducens. CHEMOSPHERE 2024; 358:142174. [PMID: 38685325 DOI: 10.1016/j.chemosphere.2024.142174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 03/03/2024] [Accepted: 04/26/2024] [Indexed: 05/02/2024]
Abstract
Silver (Ag) is a pivotal transition metal with applications in multiple industries, necessitating efficient recovery techniques. Despite various proposed methods for silver recovery from wastewaters, challenges persist especially for low concentrations. In this context, bioreduction by bacteria like Geobacter sulfurreducens, offers a promising approach by converting Ag(I) to Ag nanoparticles. To reveal the mechanisms driving microbial Ag(I) reduction, we conducted transcriptional profiling of G. sulfurreducens under Ag(I)-reducing condition. Integrated transcriptomic and protein-protein interaction network analyses identified significant transcriptional shifts, predominantly linked to c-type cytochromes, NADH, and pili. When compared to a pilus-deficient strain, the wild-type strain exhibited distinct cytochrome gene expressions, implying specialized functional roles. Additionally, despite a down-regulation in NADH dehydrogenase genes, we observed up-regulation of specific downstream cytochrome genes, highlighting NADH's potential role as an electron donor in the Ag(I) reduction process. Intriguingly, our findings also highlight the significant influence of pili on the morphology of the resulting Ag nanoparticles. The presence of pili led to the formation of smaller and more crystallized Ag nanoparticles. Overall, our findings underscore the intricate interplay of cytochromes, NADH, and pili in Ag(I) reduction. Such insights suggest potential strategies for further enhancing microbial Ag(I) reduction.
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Affiliation(s)
- Chunmao Liu
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Engineering Research Center for Water Pollution Source Control & Eco-remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China
| | - Dongchao Guo
- School of Computer Science, Beijing Information Science and Technology University, Beijing, 100101, China
| | - Su Wen
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Engineering Research Center for Water Pollution Source Control & Eco-remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China
| | - Yan Dang
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Engineering Research Center for Water Pollution Source Control & Eco-remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China
| | - Dezhi Sun
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Engineering Research Center for Water Pollution Source Control & Eco-remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China
| | - Pengsong Li
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Engineering Research Center for Water Pollution Source Control & Eco-remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China.
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Xu G, Li X, Liu X, Han J, Shao K, Yang H, Fan F, Zhang X, Dou J. Bibliometric insights into the evolution of uranium contamination reduction research topics: Focus on microbial reduction of uranium. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 917:170397. [PMID: 38307284 DOI: 10.1016/j.scitotenv.2024.170397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Revised: 01/09/2024] [Accepted: 01/21/2024] [Indexed: 02/04/2024]
Abstract
Confronting the threat of environment uranium pollution, decades of research have yielded advanced and significant findings in uranium bioremediation, resulting in the accumulation of tremendous amount of high-quality literature. In this study, we analyzed over 10,000 uranium reduction-related papers published from 1990 to the present in the Web of Science based on bibliometrics, and revealed some critical information on knowledge structure, thematic evolution and additional attention. Methods including contribution comparison, co-occurrence and temporal evolution analysis are applied. The results of the distribution and impact analysis of authors, sources, and journals indicated that the United States is a leader in this field of research and China is on the rise. The top keywords remained stable, primarily focused on chemicals (uranium, iron, plutonium, nitrat, carbon), characters (divers, surfac, speciat), and microbiology (microbial commun, cytochrome, extracellular polymeric subst). Keywords related to new strains, reduction mechanisms and product characteristics demonstrated the strongest uptrend, while some keywords related to mechanism and performance were clearly emerging in the past 5 years. Furthermore, the evolution of the thematic progression can be categorized into three stages, commencing with the discovery of the enzymatic reduction of hexavalent uranium to tetravalent uranium, developing in the groundwater remediation process at uranium-contaminated sites, and delving into the research on microbial reduction mechanisms of uranium. For future research, enhancing the understanding of mechanisms, improving uranium removal performance, and exploring practical applications can be considered. This study provides unique insights into microbial uranium reduction research, providing valuable references for related studies in this field.
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Affiliation(s)
- Guangming Xu
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing 100875, PR China
| | - Xindai Li
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing 100875, PR China
| | - Xinyao Liu
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing 100875, PR China
| | - Juncheng Han
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing 100875, PR China
| | - Kexin Shao
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing 100875, PR China
| | - Haotian Yang
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing 100875, PR China
| | - Fuqiang Fan
- Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai 519087, PR China.
| | - Xiaodong Zhang
- Analytical and Testing Center of BNU, Beijing Normal University, Beijing 100875, PR China
| | - Junfeng Dou
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing 100875, PR China.
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He Z, Dong L, Zhu P, Zhang Z, Xu T, Zhang D, Pan X. Nano-scale analysis of uranium release behavior from river sediment in the Ili basin. WATER RESEARCH 2022; 227:119321. [PMID: 36368086 DOI: 10.1016/j.watres.2022.119321] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 10/30/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
Due to the limitations of the conventional water sample pretreatment methods, some of the colloidal uranium (U) has long been misidentified as "dissolved" phase. In this work, the U species in river water in the Ili Basin was classified into submicron-colloidal (0.1-1 μm), nano-colloidal (0.1 μm-3 kDa) and dissolved phases (< 3 kDa) by using high-speed centrifugation and ultrafiltration. The U concentration in the river water was 5.39-8.75 μg/L, which was dominated by nano-colloidal phase (55-70%). The nano-colloidal particles were mainly composed of particulate organic matter (POM) and had a very high adsorption capacity for U (accounting for 70 ± 23% of colloidal U). Sediment disturbance, low temperature, and high inorganic carbon greatly improved the release of nano-colloidal U, but high levels of Ca2+ inhibited it. The simulated river experiments indicated that the flow regime determined the release of nano-colloidal U, and large amounts of nano-colloidal U might be released during spring floods in the Ili basin. Moreover, global warming increases river flow and inorganic carbon content, which may greatly promote the release and migration of nano-colloidal U.
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Affiliation(s)
- Zhanfei He
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China
| | - Lingfeng Dong
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China
| | - Pengfeng Zhu
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China
| | - Zhibing Zhang
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China
| | - Tao Xu
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China
| | - Daoyong Zhang
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China; Xinjiang Key Laboratory of Environmental Pollution and Bioremediation, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.
| | - Xiangliang Pan
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China; Xinjiang Key Laboratory of Environmental Pollution and Bioremediation, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
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Nie X, Lin Q, Dong F, Cheng W, Ding C, Wang J, Liu M, Chen G, Zhou Y, Li X, Boyanov MI, Kemner KM. Surface biomineralization of uranium onto Shewanella putrefaciens with or without extracellular polymeric substances. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 241:113719. [PMID: 35691198 DOI: 10.1016/j.ecoenv.2022.113719] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 05/16/2022] [Accepted: 05/28/2022] [Indexed: 06/15/2023]
Abstract
The influence of extracellular polymeric substances (EPS) on the interaction between uranium [U(VI)] and Shewanella putrefaciens (S. putrefaciens), especially the U(VI) biomineralization process occurring on whole cells and cell components of S. putrefaciens was investigated in this study. The removal efficiency of U(VI) by S. putrefaciens was decreased by 22% after extraction of EPS. Proteins were identified as the main components of EPS by EEM analysis and were determined to play a major role in the biosorption of uranium. SEM-EDS results showed that U(VI) was distributed around the whole cell as 500-nanometer schistose structures, which consisted primarily of U and P. However, similar uranium lamellar crystal were wrapped only on the surface of EPS-free S. putrefaciens cells. FTIR and XPS analysis indicated that phosphorus- and nitrogen-containing groups played important roles in complexing U (VI). XRD and U LIII-edge EXAFS analyses demonstrated that the schistose structure consisted of hydrogen uranyl phosphate [H2(UO2)2(PO4)2•8H2O]. Our study provides new insight into the mechanisms of induced uranium crystallization by EPS and cell wall membranes of living bacterial cells under aerobic conditions.
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Affiliation(s)
- Xiaoqin Nie
- National Collaborative Innovation Center for Nuclear Waste and Environmental Safety, Southwest University of Science and Technology, Mianyang 621010, China; Fundamental Science on Nuclear Wastes and Environmental Safety Laboratory, Southwest University of Science and Technology, Mianyang 621010, China; Mianyang Central Hospital, NHC Key Laboratory of Nuclear Technology Medical Transformation,Mianyang 621000, China.
| | - Qiaoya Lin
- National Collaborative Innovation Center for Nuclear Waste and Environmental Safety, Southwest University of Science and Technology, Mianyang 621010, China; Sino-French Institute of Nuclear Engineering and Technology, Sun Yat-sen University, Zhuhai 519082, China
| | - Faqin Dong
- National Collaborative Innovation Center for Nuclear Waste and Environmental Safety, Southwest University of Science and Technology, Mianyang 621010, China; Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, Southwest University of Science and Technology, Mianyang 621010, China
| | - Wencai Cheng
- National Collaborative Innovation Center for Nuclear Waste and Environmental Safety, Southwest University of Science and Technology, Mianyang 621010, China
| | - Congcong Ding
- Fundamental Science on Nuclear Wastes and Environmental Safety Laboratory, Southwest University of Science and Technology, Mianyang 621010, China
| | - Junling Wang
- Fundamental Science on Nuclear Wastes and Environmental Safety Laboratory, Southwest University of Science and Technology, Mianyang 621010, China
| | - Mingxue Liu
- National Collaborative Innovation Center for Nuclear Waste and Environmental Safety, Southwest University of Science and Technology, Mianyang 621010, China
| | - Guozheng Chen
- Mianyang Central Hospital, NHC Key Laboratory of Nuclear Technology Medical Transformation,Mianyang 621000, China
| | - Yan Zhou
- Mianyang Central Hospital, NHC Key Laboratory of Nuclear Technology Medical Transformation,Mianyang 621000, China
| | - Xiaoan Li
- Mianyang Central Hospital, NHC Key Laboratory of Nuclear Technology Medical Transformation,Mianyang 621000, China.
| | - Maxim I Boyanov
- Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA; Bulgarian Academy of Sciences, Institute of Chemical Engineering, Sofia 1113, Bulgaria
| | - Kenneth M Kemner
- Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
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You W, Peng W, Tian Z, Zheng M. Uranium bioremediation with U(VI)-reducing bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 798:149107. [PMID: 34325147 DOI: 10.1016/j.scitotenv.2021.149107] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 07/13/2021] [Accepted: 07/13/2021] [Indexed: 06/13/2023]
Abstract
Uranium (U) pollution is an environmental hazard caused by the development of the nuclear industry. Microbial reduction of hexavalent uranium (U(VI)) to tetravalent uranium (U(IV)) reduces U solubility and mobility and has been proposed as an effective method to remediate uranium contamination. In this review, U(VI) remediation with respect to U(VI)-reducing bacteria, mechanisms, influencing factors, products, and reoxidation are systematically summarized. Reportedly, some metal- and sulfate-reducing bacteria possess excellent U(VI) reduction capability through mechanisms involving c-type cytochromes, extracellular pili, electron shuttle, or thioredoxin reduction. In situ remediation has been demonstrated as an ideal strategy for large-scale degradation of uranium contaminants than ex situ. However, U(VI) reduction efficiency can be affected by various factors, including pH, temperature, bicarbonate, electron donors, and coexisting metal ions. Furthermore, it is noteworthy that the reduction products could be reoxidized when exposed to oxygen and nitrate, inevitably compromising the remediation effects, especially for non-crystalline U(IV) with weak stability.
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Affiliation(s)
- Wenbo You
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
| | - Wanting Peng
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
| | - Zhichao Tian
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
| | - Maosheng Zheng
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China.
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Su M, Liu Z, Yuvaraja G, Ou T, Huang Y, Hu X, Chen D. The influence of particle size and natural organic matter on U(VI) retention by natural sand: Parameterization and mechanism study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 741:140292. [PMID: 32610231 DOI: 10.1016/j.scitotenv.2020.140292] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Revised: 06/15/2020] [Accepted: 06/15/2020] [Indexed: 06/11/2023]
Abstract
Contamination caused by radionuclides such as uranium (U) has become an increasingly serious environmental problem. The unique and diverse features of uranyl ions (U(VI)) remarkably dominate their mobility and environmental impact on the ecosystem. Understanding the sorption behavior and fate of aqueous U(VI) ions on natural mineral(s) such as quartz sand (a typical type of crystalline silica (SiO2)) particles is essential for unraveling many environmental issues. In this work, the sorption of uranyl ions by various particle size quartz sands under different reaction conditions was thoroughly investigated. The quartz sand with an average particle size of 3.588 μm exhibited an excellent sorption performance for the removal of aqueous U(VI) ions at pH 5.0. The sorption rate increased as the dosage of sorbent increased. The sorption rate descends with the rise of the initial U(VI) concentration while its sorption amount is reversed. The elevation of temperature impeded the U(VI) sorption. Humic acid (a typical natural organic matter) showed significant impacts on U(VI) removal. Ions of Ca2+, CO32- and K+ remarkably inhibited the U(VI) sorption, while PO43- ions significantly promoted the U(VI) sorption. The pseudo second-order kinetic model could fit well with the experimental sorption data. The U(VI) sorption is mainly chemisorption and it is an exothermic process. After sorption, the surface of used quartz sand became much smooth and XPS signals of U(VI) were detected, evidencing the success of the removal of aqueous U(VI). The outcomes of this study highlighted both solution pH and natural organic matters played critical roles on U(VI) removal by sand particles. This study further enhances our comprehension from the molecular-scale process manipulating U(VI) sorption behavior at the mineral-aqueous interface.
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Affiliation(s)
- Minhua Su
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Radionuclides Pollution Control and Resources, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Zequan Liu
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Radionuclides Pollution Control and Resources, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Gutha Yuvaraja
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Radionuclides Pollution Control and Resources, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Tao Ou
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Radionuclides Pollution Control and Resources, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Ying Huang
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Radionuclides Pollution Control and Resources, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Xiaoting Hu
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Diyun Chen
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Radionuclides Pollution Control and Resources, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China.
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Romanchuk AY, Vlasova IE, Kalmykov SN. Speciation of Uranium and Plutonium From Nuclear Legacy Sites to the Environment: A Mini Review. Front Chem 2020; 8:630. [PMID: 32903456 PMCID: PMC7434977 DOI: 10.3389/fchem.2020.00630] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Accepted: 06/17/2020] [Indexed: 12/02/2022] Open
Abstract
The row of 15 chemical elements from Ac to Lr with atomic numbers from 89 to 103 are known as the actinides, which are all radioactive. Among them, uranium and plutonium are the most important as they are used in the nuclear fuel cycle and nuclear weapon production. Since the beginning of national nuclear programs and nuclear tests, many radioactively contaminated nuclear legacy sites, have been formed. This mini review covers the latest experimental, modeling, and case studies of plutonium and uranium migration in the environment, including the speciation of these elements and the chemical reactions that control their migration pathways.
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Affiliation(s)
| | | | - Stepan N. Kalmykov
- Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia
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Editorial: Special Issue on Recent Advances in Environmental Sciences. J Environ Sci (China) 2020; 87:427-429. [PMID: 31791516 DOI: 10.1016/j.jes.2019.09.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
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