The dynamic development of bacterial community following long-term weathering of bauxite residue

Amelioration of the physicochemical properties enhanced the resilience of bacteria in bauxite residues

Bacteria-driven strategies have gained attention because of their effectiveness, viability, and cost-efficiency in the soil formation process of bauxite residues. However, further investigation is needed to enhance the extreme environment of bauxite residues and facilitate long-term sustainable development of bacteria. Here, soil, phosphogypsum, and leaf litter were selected as amendments, and soil and leaf litter were also used as bacterial inoculants in a 12-month microcosm experiment with bauxite residues. The results showed significant improvements in physicochemical properties, including alkalinity, organic carbon content, nutrient availability, and physical structure, when bauxite residue was mixed with amendments, particularly when different amendments were combined. The diversity, structure, and function of the bacterial community were significantly enhanced with the amelioration of the physicochemical properties. In the treated samples, especially those treated with a combination of different amendments, the relative abundance (RA) of alkali-resistant bacterial taxa decreased, whereas the RA of some common taxa found in normal soil increased, and the structure of the bacterial community gradually changed towards that of normal soil. A strong correlation between physicochemical and biological properties was found. These findings suggest that rational application of soil, phosphogypsum, and leaf litter effectively improves the environmental conditions of bauxite residues and facilitate long-term sustainable bacterial communities.

The potential of Hungarian bauxite residue isolates for biotechnological applications

Bauxite residue (red mud) is considered an extremely alkaline and salty environment for the biota. We present the first attempt to isolate, identify and characterise microbes from Hungarian bauxite residues. Four identified bacterial strains belonged to the Bacilli class, one each to the Actinomycetia, Gammaproteobacteria, and Betaproteobacteria classes, and two to the Alphaproteobacteria class. All three identified fungi strains belonged to the Ascomycota division. Most strains tolerated pH 8-10 and salt content at 5-7% NaCl concentration. Alkalihalobacillus pseudofirmus BRHUB7 and Robertmurraya beringensis BRHUB9 can be considered halophilic and alkalitolerant. Priestia aryabhattai BRHUB2, Penicillium chrysogenum BRHUF1 and Aspergillus sp. BRHUF2 are halo- and alkalitolerant strains. Most strains produced siderophores and extracellular polymeric substances, could mobilise phosphorous, and were cellulose degraders. These strains and their enzymes are possible candidates for biotechnological applications in processes requiring extreme conditions, e.g. bioleaching of critical raw materials and rehabilitation of alkaline waste deposits.

Geochemical properties, heavy metals and soil microbial community during revegetation process in a production Pb-Zn tailings

Lead-zinc (Pb-Zn) tailings pose a significant environmental threat from heavy metals (HMs) contamination. Revegetation is considered as a green path for HM remediation. However, the interplay between HM transport processes and soil microbial community in Pb-Zn tailings (especially those in production) remain unclear. This study investigated the spatial distribution of HMs as well as the crucial roles of the soil microbial community (i.e., structure, richness, and diversity) during a three-year revegetation of production Pb-Zn tailings in northern Guangdong province, China. Prolonged tailings stockpiling exacerbated Pb contamination, elevating concentrations (from 10.11 to 11.53 g/kg) in long-term weathering. However, revegetation effectively alleviated Pb, reducing its concentrations of 9.81 g/kg. Through 16 S rRNA gene amplicon sequencing, the dominant genera shifted from Weissella (44%) to Thiobacillus (17%) and then to Pseudomonas (comprising 44% of the sequences) during the revegetation process. The structural equation model suggested that Pseudomonas, with its potential to transform bioavailable Pb into a more stable form, emerged as a potential Pb remediator. This study provides essential evidence of HMs contamination and microbial community dynamics during Pb-Zn tailings revegetation, contributing to the development of sustainable microbial technologies for tailings management.

Straw addition increases enzyme activities and microbial carbon metabolism activities in bauxite residue

Recovery of microbial functions is one of the critical processes in the nutrient cycling of bauxite residue for improving revegetation. Straw is considered to be effective to increase microbial diversity and drive the development of the microbial community, but its effect on microbial carbon metabolism has not been illustrated. The present study evaluated the effects of phosphogypsum (PG), straw (SF) and phosphogypsum plus straw (PGSF) on physicochemical properties, enzyme activities, and microbial carbon metabolism activities in bauxite residue. After 180 days incubation, PG, SF and PGSF treatment significantly reduced the residue pH from 10.85 to 8.64, 9.39 and 8.06, respectively. Compared to CK treatment, SF treatment significantly increased the content of total organic carbon (TOC) and organic carbon fractions (DOC, MBC, EOC, and POC). In addition, straw addition significantly increased glucosidase, cellulose, urease, and alkaline phosphatase by 7.2-9.1 times, 5.8-7.1 times, 11.1-12.5 times, and 1.1-2.2 times, respectively. The Biolog results showed that straw addition significantly increased microbial metabolic activity (AWCD) and diversity in bauxite residue. Redundancy analysis indicated total nitrogen (TN) and carbon fractions (POC, MBC and DOC) were the most important environmental factors affecting microbial metabolic activity and diversity in bauxite residue. These findings provided us with a biogeochemical perspective to reveal soil formation in bauxite residue and suggested that nutrient supplement and regulation of salinity-alkalinity benefit the establishment of microbial communities and functions in bauxite residue.

Halophyte Elymus dahuricus colonization regulates microbial community succession by mediating saline-alkaline and biogenic organic matter in bauxite residue

Alkalinity regulation and nutrient accumulation are critical factors in the construction of plant and microbial communities and soil formation in bauxite residue, and are extremely important for sustainable vegetation restoration in bauxite residue disposal areas. However, the establishment and succession of microbial communities driven by plant colonization-mediated improvements in the physicochemical properties of bauxite residues remain poorly understood. Thus, in this study, we determined the saline-alkali properties and dissolved organic matter (DOM) components under plant growth conditions and explored the microbial community diversity and structure using Illumina high-throughput sequencing. The planting of Elymus dahuricus (E. dahuricus) in the bauxite residue resulted in a significant decrease in total alkalinity (TA), exchangeable Na, and electrical conductivity (EC) as well as the release of more tryptophan-like protein compounds and low-molecular-weight humic substances associated with biological activities into the bauxite residue substrate. Taxonomical analysis revealed an initial-stage bacterial and fungal community dominated by alkaline-tolerant Actinobacteriota, Firmicutes, and Ascomycota, and an increase in the relative abundances of the phyla Bacteroidota, Cyanobacteria, Chloroflexi, and Gemmatimonadota. The biological activities of phylum Actinobacteriota, Bacteroidota, and Gemmatimonadota were significantly associated with protein-like and UVA-like humic substances. As eutrophic bacteria, Proteobacteria participate in the transformation of humic substances and can not only utilize small molecules of organic matter and convert them into humic substances but also promote the gradual conversion of humic acids into simple molecular compounds. Our results suggest that plant roots secrete organic matter and microbial metabolites as the main biogenic organic matter that participates in the establishment and succession of the microbial community in bauxite residues. Root length affects bacterial and fungal diversity by mediating the production of protein-like substances.

A critical review on the migration and transformation processes of heavy metal contamination in lead-zinc tailings of China

The health risks of lead-zinc (Pb-Zn) tailings from heavy metal (HMs) contamination have been gaining increasing public concern. The dispersal of HMs from tailings poses a substantial threat to ecosystems. Therefore, studying the mechanisms of migration and transformation of HMs in Pb-Zn tailings has significant ecological and environmental significance. Initially, this study encapsulated the distribution and contamination status of Pb-Zn tailings in China. Subsequently, we comprehensively scrutinized the mechanisms governing the migration and transformation of HMs in the Pb-Zn tailings from a geochemical perspective. This examination reveals the intricate interplay between various biotic and abiotic constituents, including environmental factors (EFs), characteristic minerals, organic flotation reagents (OFRs), and microorganisms within Pb-Zn tailings interact through a series of physical, chemical, and biological processes, leading to the formation of complexes, chelates, and aggregates involving HMs and OFRs. These interactions ultimately influence the migration and transformation of HMs. Finally, we provide an overview of contaminant migration prediction and ecological remediation in Pb-Zn tailings. In this systematic review, we identify several forthcoming research imperatives and methodologies. Specifically, understanding the dynamic mechanisms underlying the migration and transformation of HMs is challenging. These challenges encompass an exploration of the weathering processes of characteristic minerals and their interactions with HMs, the complex interplay between HMs and OFRs in Pb-Zn tailings, the effects of microbial community succession during the storage and remediation of Pb-Zn tailings, and the importance of utilizing process-based models in predicting the fate of HMs, and the potential for microbial remediation of tailings.

Sodium removal from bauxite desilication product (sodalite) aided by chelating effects of inorganic and organic acids

Dealkalization is a prerequisite to converting bauxite residue into non-hazardous materials that can be used for various upcycling applications. Structural alkali (Na⁺) lodged inside the densely packed aluminosilicate-cages of sodalite, the dominant desilication product from refining alumina, is a common culprit in the persistence of strong alkalinity of bauxite residue. The present study unravelled chemical and mineralogical processes involved in sodalite dealkalization, driven by organic and inorganic acids. These acids have different H⁺ dissociation coefficients and their anions have different chelation abilities with surface metal atoms of aluminosilicate minerals. The efficacy of sodium removal by exposure to the acids was found not only dependent on the acid strength (pK_a), but also on the chelating property of dissociated conjugate anions. Following an initial H⁺-Na⁺ exchange, Na⁺ removal from sodalite was correlated with partial hydrolysis of aluminosilicate network and resultant chelating reactions with acid anions. The selection of organic and inorganic acids whose conjugate bases possess good chelating capability in the pH buffer zone 7-9 (e.g., oxalate or phosphate), would provide significant aid to the dealkalization process. The findings in this study are crucial in understanding the conversion of bauxite residue into a soil-like growth media (technosol) for sustainable mined land rehabilitation.

Molecular insights into the chemodiversity of dissolved organic matter and its interactions with the microbial community in eco-engineered bauxite residue

Dissolved organic matter (DOM) plays an important role in the biogeochemical function development of bauxite residue. Nevertheless, the DOM composition at the molecular level and its interaction with microbial community during soil formation of bauxite residue driven by eco-engineering strategies are still relatively unknown. In the present study, the DOM composition at the molecular level and its interactions with the microbial community in amended and revegetated bauxite residue were explored. The results showed that the amendment applications and revegetation enhanced the accumulation of unsaturated molecules with high values of double bond equivalent (DBE) and nominal oxidation of carbon (NOSC) and aromatic compounds with high values of modified aromaticity index (AI_mod) as well as the reduction of average weighted molecular mass of DOM molecules. Significant correlations between DOM molecules and the microbial community and Fe/Al oxides were found. DOM molecules were decomposed by the microbial community and sequestered onto Fe/Al oxides, which were the main driving factors that changed DOM chemodiversity in the amended and revegetated bauxite residue. These findings are beneficial for understanding the biogeochemical behaviours of DOM and providing a critical basis for the development of eco-engineering strategies towards soil formation and the sustainable revegetation of bauxite residue.

Contrasted speciation distribution of toxic metal(loid)s and microbial community structure in vanadium-titanium magnetite tailings under dry and wet disposal methods

Tailing disposal technologies such as dry and wet disposal methods have a profound effect on the ecosystem of mining areas. However, the chemical speciation of metal(loid)s and microbial community structure in tailings under different disposal methods are still poorly understood. Here we compared the bioavailable fraction of metal(loid)s and the microbial community in vanadium-titanium (V-Ti) magnetite tailing profiles derived from dry and wet stockpiled methods. In wet tailings, the bioavailability of Cr, Cu, Mn, Ni, V, and Zn was higher than that in dry tailings as identified by BCR sequential extraction. Especially for Cu and Ni, the oxidizable fraction was the predominant fraction except the residual fraction, accounting for 37.2-59.0% and 23.2-36.6% of the total concentration in wet tailings, respectively. Based on 16 S rRNA high-throughput sequencing, totally 12 indicator bacterial taxa were detected in dry tailings against 68 in wet tailings. As the biomarkers in wet tailings, genera Sulfuricurvum, Geobacter, and Pseudomonas were expected to be applied to the transformation of metal(loid)s in the tailings. Our results emphasize the importance of dehydration treatment of tailings before stockpiling to minimize the environmental risks caused by toxic metal(loid)s, and provide insights into the engineering application of microbial technologies in V-Ti magnetite tailing area.

Neutralization and Improvement of Bauxite Residue by Saline-Alkali Tolerant Bacteria

The high salt-alkalinity of bauxite residue (BR) hinders plant growth and revegetation of bauxite residue disposal areas (BRDA), which cause serious potential environmental and ecological risks. Bioneutralization is a promising method for improving the properties of BR and plant colonization. In the present study, a strong saline-alkali tolerant bacteria (ZH-1) was isolated from aged BR and identified as Bacillus sp. The medium of ZH-1 was optimized by orthogonal tests, and ZH-1 could decrease the medium pH from 11.8 to 6.01 (agitated culture) and 6.48 (static culture) by secretion of citric acid, oxalic acid and tartaric acid. With the inoculation of ZH-1, the pH of BR decreased from 11.6 to 8.76, and the water-soluble salt in BR increased by 68.11%. ZH-1 also changed the aggregate size distribution of BR, the mechanical-stable aggregates and water-stable aggregates increased by 18.76% and 10.83%, respectively. At the same time, the stability of the aggregates obviously increased and the destruction rate decreased from 94.37% to 73.46%. In addition, the microbial biomass carbon increased from 425 to 2794 mg/kg with the inoculation of ZH-1. Bacterial community analysis revealed that Clostridia, Bacilli, Gammaproteobacteria, Betaproteobacteria and Alphaproteobacteria were the main classes in the naturalized BR, and the inoculation of ZH-1 increased the diversity of bacteria in the BR. Overall, ZH-1 has great potential for neutralization and improvement the properties of BR and may be greatly beneficial for the revegetation of BRDA.

Improvements on physical conditions of bauxite residue following application of organic materials

Soil formation and ecological rehabilitation is the most promising strategy to eliminate environmental risks of bauxite residue disposal areas. Its poor physical structure is nevertheless a major limitation to plant growth. Organic materials were demonstrated as effective ameliorants to improve the physical conditions of bauxite residue. In this study, three different organic materials including straw (5% W/W), humic acid (5% W/W), and humic acid-acrylamide polymer (0.2% and 0.4%, W/W) were selected to evaluate their effects on physical conditions of bauxite residue pretreated by phosphogypsum following a 120-day incubation experiment. The proportion of 2-1 mm macro-aggregates, mean weight diameter (MWD) and geometric mean diameter (GWD) increased following organic materials addition, which indicated that organic materials could enhance aggregate stability. Compared with straw, and humic acid, humic acid-acrylamide polymer application had improved effects on the formation of water-stable aggregates in the residues. Furthermore, organic materials increased the total porosity, total pore volume and average pore diameter, and reduced the micropore content according to nitrogen gas adsorption (NA) and mercury intrusion porosimetry (MIP) analysis, whilst enhancing water retention of the residues based on water characteristic curves. Compared with traditional organic wastes, humic acid-acrylamide polymer could be regarded as a candidate according to the comprehensive consideration of the additive amount and the effects on physical conditions of bauxite residue. These findings could provide a novel application to both Ca-contained acid solid waste and high-molecular polymers on ecological rehabilitation at disposal areas.

Contrasted microbial community colonization of a bauxite residue deposit marked by a complex geochemical context

Bauxite residue is the alkaline byproduct generated during alumina extraction and is commonly landfilled in open-air deposits. The growth in global alumina production have raised environmental concerns about these deposits since no large-scale reuses exist to date. Microbial-driven techniques including bioremediation and critical metal bio-recovery are now considered sustainable and cost-effective methods to revalorize bauxite residues. However, the establishment of microbial communities and their active role in these strategies are still poorly understood. We thus determined the geochemical composition of different bauxite residues produced in southern France and explored the development of bacterial and fungal communities using Illumina high-throughput sequencing. Physicochemical parameters were influenced differently by the deposit age and the bauxite origin. Taxonomical analysis revealed an early-stage microbial community dominated by haloalkaliphilic microorganisms and strongly influenced by chemical gradients. Microbial richness, diversity and network complexity increased significantly with the deposit age, reaching an equilibrium community composition similar to typical soils after decades of natural weathering. Our results suggested that salinity, pH, and toxic metals affected the bacterial community structure, while fungal community composition showed no clear correlations with chemical variations.

Insights into variations on dissolved organic matter of bauxite residue during soil-formation processes following 2-year column simulation

Bauxite residue, an industrial alkaline solid waste, has a low organic carbon content which hinders plant growth. Dissolved organic matter (DOM) drives many biogeochemical processes including carbon storage and soil formation in soils. Input of exogenous organic materials may provide organic carbon and accelerate soil formation processes in bauxite residue. However, the potential effects of ameliorants on the quantity and quality of DOM in bauxite residue are still poorly understood. Here, the integration of ultraviolet-visible (UV-Vis) spectra, fluorescence spectra, and parallel factor (PARAFAC) analysis were used to investigate the vertical characteristics of DOM in bauxite residue treated by PV (the combined addition of 2% phosphogypsum and 4% vermicompost, w/w) and BS (6% w/w including 4% bagasse and 2% bran) with 2-year column experiments. The content of DOM in untreated residues ranged from 0.064 to 0.096 g/kg, whilst higher contents of DOM were observed in PV (0.13 g/kg) and BS (0.26 g/kg) treatment. Meanwhile, with the increase of residue depth, the aromaticity and hydrophobic components of DOM in residue decreased, which indicated that the degree of humification of the treated residues in the upper layer was higher than that in the lower layer. Compared with BR, BS and PV treatment accumulated the related content of fulvic acid-like substance from 36.14% to 71.33% and 74.86%, respectively. The incorporation of vermicompost and biosolids increased the content of humic-like substances, whilst decreasing the content of protein-like substances in the surface layer, which may be due to the enrichment of the microbial community. During soil formation processes, the application of organic amendments reduced both salinity and alkalinity, enhanced microbial community diversity, and changed the quantity and quality of DOM in bauxite residue. These findings improve our understanding of the dynamics of DOM and response of DOM to soil formation processes in bauxite residue.

The Microbiology of Metal Mine Waste: Bioremediation Applications and Implications for Planetary Health

Mine wastes pollute the environment with metals and metalloids in toxic concentrations, causing problems for humans and wildlife. Microorganisms colonize and inhabit mine wastes, and can influence the environmental mobility of metals through metabolic activity, biogeochemical cycling and detoxification mechanisms. In this article we review the microbiology of the metals and metalloids most commonly associated with mine wastes: arsenic, cadmium, chromium, copper, lead, mercury, nickel and zinc. We discuss the molecular mechanisms by which bacteria, archaea, and fungi interact with contaminant metals and the consequences for metal fate in the environment, focusing on long-term field studies of metal-impacted mine wastes where possible. Metal contamination can decrease the efficiency of soil functioning and essential element cycling due to the need for microbes to expend energy to maintain and repair cells. However, microbial communities are able to tolerate and adapt to metal contamination, particularly when the contaminant metals are essential elements that are subject to homeostasis or have a close biochemical analog. Stimulating the development of microbially reducing conditions, for example in constructed wetlands, is beneficial for remediating many metals associated with mine wastes. It has been shown to be effective at low pH, circumneutral and high pH conditions in the laboratory and at pilot field-scale. Further demonstration of this technology at full field-scale is required, as is more research to optimize bioremediation and to investigate combined remediation strategies. Microbial activity has the potential to mitigate the impacts of metal mine wastes, and therefore lessen the impact of this pollution on planetary health.

Appropriate human intervention stimulates the development of microbial communities and soil formation at a long-term weathered bauxite residue disposal area

Bauxite residue discharged to disposal areas, which could generate environmental pollution issues. Long-term natural restoration may improve the physicochemical properties of the residues, in turn supporting vegetation establishment, and effectively managing pollution. Nevertheless, the effects of short-term human intervention on soil formation in the weathered disposal areas are still relatively unknown. Thus, residue samples with different depths from different regions including no vegetation, sparse vegetation, complete vegetation coverage, and complete vegetation coverage following sewage sludge treatment were selected to analyze microbial community using Illumina high-throughput sequencing technology and evaluate soil formation process. Long-term weathering changed pH, the fraction of water-stable aggregates and nutrient concentrations, whilst promoting Proteobacteria, Chloroflexi, Acidobacteria and Planctomycete populations. Sewage sludge addition enhanced aggregate stability and significantly changed microbial community diversity. Sewage sludge application enriched the relative abundances of Proteobacteria and Bacteroidetes, whilst decreasing the relative abundance of Acidobacteria, which may be due to variation in environmental factors. Canonical correspondence analysis revealed that pH and EC were the main factors affecting microbial structure, followed by organic carbon content and aggregate stability. The results enhance the understanding of soil formation in bauxite residue and reveal the potential benefit of human intervention in ecological reconstruction at disposal areas.