Application of NIR hyperspectral imaging for discrimination of lamb muscles

Early detection and spectral signature identification of tomato fungal diseases (Alternaria alternata, Alternaria solani, Botrytis cinerea, and Fusarium oxysporum) by RGB and hyperspectral image analysis and machine learning

Early identification of plant fungal diseases is critical for timely treatment, which can prevent significant agricultural losses. While molecular analysis offers high accuracy, it is often expensive and time-consuming. In contrast, image processing combined with machine learning provides a rapid and cost-effective alternative for disease diagnosis. This study presents a novel approach for detecting four common fungal diseases in tomatoes, Botrytis cinerea, Fusarium oxysporum, Alternaria alternata, and Alternaria solani, using both RGB (visible) and hyperspectral (400-950 nm) imaging of plant leaves over the first 11 days post-infection. Data sets were generated from leaf samples, and a range of statistical, texture, and shape features were extracted to train machine learning models. The spectral signatures of each disease were also developed for improved classification. The random forest model achieved the highest accuracy, with classification rates for RGB images of 65%, 71%, 75%, 77%, 83%, and 87% on days 1, 3, 5, 7, 9, and 11, respectively. For hyperspectral images, the classification accuracy increased from 86% on day 1 to 98% by day 11. Two- and three-dimensional spectral analyses clearly differentiated healthy plants from infected ones as early as day 3 for Botrytis cinerea. The Laplacian score method further highlighted key texture features, such as energy at 550 and 841 nm, entropy at 600 nm, correlation at 746 nm, and standard deviation at 905 nm, that contributed most significantly to disease detection. The method developed in this study offers a valuable and efficient tool for accelerating plant disease diagnosis and classification, providing a practical alternative to molecular techniques. .

Prediction and Visualization of Total Volatile Basic Nitrogen in Yellow Croaker (Larimichthys polyactis) Using Shortwave Infrared Hyperspectral Imaging

In the present investigation, we have devised a hyperspectral imaging (HSI) apparatus to assess the chemical characteristics and freshness of the yellow croaker (Larimichthys polyactis) throughout its storage period. This system operates within the shortwave infrared spectrum, specifically ranging from 900 to 1700 nm. A variety of spectral pre-processing techniques, including standard normal variate (SNV), multiple scatter correction, and Savitzky-Golay (SG) derivatives, were employed to augment the predictive accuracy of total volatile basic nitrogen (TVB-N)-which serves as a critical freshness parameter. Among the assessed methodologies, SG-1 pre-processing demonstrated superior predictive accuracy (Rp2 = 0.8166). Furthermore, this investigation visualized freshness indicators as concentration images to elucidate the spatial distribution of TVB-N across the samples. These results indicate that HSI, in conjunction with chemometric analysis, constitutes an efficacious instrument for the surveillance of quality and safety in yellow croakers during its storage phase. Moreover, this methodology guarantees the freshness and safety of seafood products within the aquatic food sector.

Monitoring the Aging and Edible Safety of Pork in Postmortem Storage Based on HSI and Wavelet Transform

The process of meat postmortem aging is a complex one, in which improved tenderness and aroma coincide with negative effects such as water loss and microbial growth. Determining the optimal postmortem storage time for meat is crucial but also challenging. A new visual monitoring technique based on hyperspectral imaging (HSI) has been proposed to monitor pork aging progress. M. longissimus thoracis from 15 pigs were stored at 4 °C for 12 days while quality indexes and HSI spectra were measured daily. Based on changes in physical and chemical indicators, 100 out of the 180 pieces of meat were selected and classified into rigor mortis, aged, and spoilt meat. Discrete wavelet transform (DWT) technology was used to improve the accuracy of classification. DWT separated approximate and detailed signals from the spectrum, resulting in a significant increase in classification speed and precision. The support vector machine (SVM) model with 70 band spectra achieved remarkable classification accuracy of 97.06%. The study findings revealed that the aging and microbial spoilage process started at the edges of the meat, with varying rates from one pig to another. Using HSI and visualization techniques, it was possible to evaluate and portray the postmortem aging progress and edible safety of pork during storage. This technology has the potential to aid the meat industry in making informed decisions on the optimal storage and cooking times that would preserve the quality of the meat and ensure its safety for consumption.

Design and Experiment of a Portable Near-Infrared Spectroscopy Device for Convenient Prediction of Leaf Chlorophyll Content

This study designs a spectrum data collection device and system based on the Internet of Things technology, aiming to solve the tedious process of chlorophyll collection and provide a more convenient and accurate method for predicting chlorophyll content. The device has the advantages of integrated design, portability, ease of operation, low power consumption, low cost, and low maintenance requirements, making it suitable for outdoor spectrum data collection and analysis in fields such as agriculture, environment, and geology. The core processor of the device uses the ESP8266-12F microcontroller to collect spectrum data by communicating with the spectrum sensor. The spectrum sensor used is the AS7341 model, but its limited number of spectral acquisition channels and low resolution may limit the exploration and analysis of spectral data. To verify the performance of the device and system, this experiment collected spectral data of Hami melon leaf samples and combined it with a chlorophyll meter for related measurements and analysis. In the experiment, twelve regression algorithms were tested, including linear regression, decision tree, and support vector regression. The results showed that in the original spectral data, the ETR method had the best prediction effect at a wavelength of 515 nm. In the training set, RMSEc was 0.3429, and Rc2 was 0.9905. In the prediction set, RMSEp was 1.5670, and Rp2 was 0.8035. In addition, eight preprocessing methods were used to denoise the original data, but the improvement in prediction accuracy was not significant. To further improve the accuracy of data analysis, principal component analysis and isolation forest algorithm were used to detect and remove outliers in the spectral data. After removing the outliers, the RFR model performed best in predicting all wavelength combinations of denoised spectral data using PBOR. In the training set, RMSEc was 0.8721, and Rc2 was 0.9429. In the prediction set, RMSEp was 1.1810, and Rp2 was 0.8683.

Detection and prevention of foreign material in food: A review

This review highlights the critical concern foreign material contamination poses across the food processing industry and provides information on methods and implementations to minimize the hazards caused by foreign materials. A foreign material is defined as any non-food, foreign bodies that may cause illness or injury to the consumer and are not typically part of the food. Foreign materials can enter the food processing plant as part of the raw materials such as fruit pits, bones, or contaminants like stones, insects, soil, grit, or pieces of harvesting equipment. Over the past 20 years, foreign materials have been responsible for about one out of ten recalls of foods, with plastic fragments being the most common complaint. The goal of this paper is to further the understanding of the risks foreign materials are to consumers and the tools that could be used to minimize the risk of foreign objects in foods.

Making the Invisible Visible: Toward High-Quality Terahertz Tomographic Imaging via Physics-Guided Restoration

Terahertz (THz) tomographic imaging has recently attracted significant attention thanks to its non-invasive, non-destructive, non-ionizing, material-classification, and ultra-fast nature for object exploration and inspection. However, its strong water absorption nature and low noise tolerance lead to undesired blurs and distortions of reconstructed THz images. The diffraction-limited THz signals highly constrain the performances of existing restoration methods. To address the problem, we propose a novel multi-view Subspace-Attention-guided Restoration Network (SARNet) that fuses multi-view and multi-spectral features of THz images for effective image restoration and 3D tomographic reconstruction. To this end, SARNet uses multi-scale branches to extract intra-view spatio-spectral amplitude and phase features and fuse them via shared subspace projection and self-attention guidance. We then perform inter-view fusion to further improve the restoration of individual views by leveraging the redundancies between neighboring views. Here, we experimentally construct a THz time-domain spectroscopy (THz-TDS) system covering a broad frequency range from 0.1 to 4 THz for building up a temporal/spectral/spatial/material THz database of hidden 3D objects. Complementary to a quantitative evaluation, we demonstrate the effectiveness of our SARNet model on 3D THz tomographic reconstruction applications.

Supplementary Information

The online version contains supplementary material available at 10.1007/s11263-023-01812-y.

Prediction of acrylamide content in potato chips using near-infrared spectroscopy

Acrylamide (ACR), a neurotoxin with carcinogenic properties that can affect fertility, is commonly found in fried and baked foods such as potato chips. This study was carried out to predict the ACR content in fried and baked potato chips using near-infrared (NIR) spectroscopy. Effective wavenumbers were identified using competitive adaptive reweighted sampling (CARS) and the successive projections algorithm (SPA). Six wavenumbers (12799 cm^-1, 12007 cm^-1, 10944 cm^-1, 10943 cm^-1, 5801 cm^-1, and 4332 cm^-1) were selected using the ratio (λ_i/λ_j) and difference (λ_i-λ_j) of any two wavenumbers from the CARS and SPA results. First, partial least squares (PLS) models were established based on full spectral wavebands (12799-4000 cm^-1), and the prediction models were subsequently redeveloped based on effective wavenumbers to predict ACR content. Results showed that the full and selected wavenumbers-based PLS models obtained the coefficient of determination (R²) of 0.7707 and 0.6670, respectively, and the root mean square errors of prediction (RMSEP) of 53.0442 μg/kg and 64.3810 μg/kg, respectively, in the prediction sets. The results of this work demonstrate the suitability of NIR spectroscopy as a non-destructive method for predicting ACR content in potato chips.

Full-field optical spectroscopy at a high spectral resolution using atomic vapors

Spectral imaging techniques extract spectral information using dispersive elements in combination with optical microscopes. For rapid acquisition, multiplexing spectral information along one dimension of imaged pixels has been demonstrated in hyperspectral imaging, as well as in Raman and Brillouin imaging. Full-field spectroscopy, i.e., multiplexing where imaged pixels are collected in 2D simultaneously while spectral analysis is performed sequentially, can increase spectral imaging speed, but so far has been attained at low spectral resolutions. Here, we extend 2D multiplexing to high spectral resolutions of ∼80 MHz (∼0.0001 nm) using high-throughput spectral discrimination based on atomic transitions.

Raw Beef Patty Analysis Using Near-Infrared Hyperspectral Imaging: Identification of Four Patty Categories

South African legislation regulates the classification/labelling and compositional specifications of raw beef patties, to combat processed meat fraud and to protect the consumer. A near-infrared hyperspectral imaging (NIR-HSI) system was investigated as an alternative authentication technique to the current destructive, time-consuming, labour-intensive and expensive methods. Eight hundred beef patties (ca. 100 g) were made and analysed to assess the potential of NIR-HSI to distinguish between the four patty categories (200 patties per category): premium 'ground patty'; regular 'burger patty'; 'value-burger/patty' and the 'econo-burger'/'budget'. Hyperspectral images were acquired with a HySpex SWIR-384 (short-wave infrared) imaging system using the Breeze^® acquisition software, in the wavelength range of 952-2517 nm, after which the data was analysed using image analysis, multivariate techniques and machine learning algorithms. It was possible to distinguish between the four patty categories with accuracies ≥97%, indicating that NIR-HSI offers an accurate and reliable solution for the rapid identification and authentication of processed beef patties. Furthermore, this study has the potential of providing an alternative to the current authentication methods, thus contributing to the authenticity and fair-trade of processed meat products locally and internationally.

Effect of Moisture Content Difference on the Analysis of Quality Attributes of Red Pepper (Capsicum annuum L.) Powder Using a Hyperspectral System

The variety of characteristics of red pepper makes it difficult to analyze at the production field through hyperspectral imaging. The importance of pretreatment to adjust the moisture content (MC) in the process of predicting the quality attributes of red pepper powder through hyperspectral imaging was investigated. Hyperspectral images of four types of red pepper powder with different pungency levels and MC were acquired in the visible near-infrared (VIS-NIR) and short-wave infrared (SWIR) regions. Principal component analysis revealed that the powders were grouped according to their pungency level, color value, and MC (VIS-NIR, Principal Component 1 = 95%; SWIR, Principal Component 1 = 91%). The loading plot indicated that 580-610, 675-760, 870-975, 1020-1130, and 1430-1520 nm are the key wavelengths affected by the presence of O-H and C-H bonds present in red pigments, capsaicinoids, and water molecules. The R² of the partial least squares model for predicting capsaicinoid and free sugar in samples with a data MC difference of 0-2% was 0.9 or higher, and a difference of more than 2% in MC had a negative effect on prediction accuracy. The color value prediction accuracy was barely affected by the difference in MC. It was demonstrated that adjusting the MC is essential for capsaicinoid and free sugar analysis of red pepper.

Characterisation and Identification of Individual Intact Goat Muscle Samples (Capra sp.) Using a Portable Near-Infrared Spectrometer and Chemometrics

Adulterated, poor-quality, and unsafe foods, including meat, are still major issues for both the food industry and consumers, which have driven efforts to find alternative technologies to detect these challenges. This study evaluated the use of a portable near-infrared (NIR) instrument, combined with chemometrics, to identify and classify individual-intact fresh goat muscle samples. Fresh goat carcasses (n = 35; 19 to 21.7 Kg LW) from different animals (age, breeds, sex) were used and separated into different commercial cuts. Thus, the longissimus thoracis et lumborum, biceps femoris, semimembranosus, semitendinosus, supraspinatus, and infraspinatus muscles were removed and scanned (900–1600 nm) using a portable NIR instrument. Differences in the NIR spectra of the muscles were observed at wavelengths of around 976 nm, 1180 nm, and 1430 nm, associated with water and fat content (e.g., intramuscular fat). The classification of individual muscle samples was achieved by linear discriminant analysis (LDA) with acceptable accuracies (68–94%) using the second-derivative NIR spectra. The results indicated that NIR spectroscopy could be used to identify individual goat muscles.

A Review on Meat Quality Evaluation Methods Based on Non-Destructive Computer Vision and Artificial Intelligence Technologies

Increasing meat demand in terms of both quality and quantity in conjunction with feeding a growing population has resulted in regulatory agencies imposing stringent guidelines on meat quality and safety. Objective and accurate rapid non-destructive detection methods and evaluation techniques based on artificial intelligence have become the research hotspot in recent years and have been widely applied in the meat industry. Therefore, this review surveyed the key technologies of non-destructive detection for meat quality, mainly including ultrasonic technology, machine (computer) vision technology, near-infrared spectroscopy technology, hyperspectral technology, Raman spectra technology, and electronic nose/tongue. The technical characteristics and evaluation methods were compared and analyzed; the practical applications of non-destructive detection technologies in meat quality assessment were explored; and the current challenges and future research directions were discussed. The literature presented in this review clearly demonstrate that previous research on non-destructive technologies are of great significance to ensure consumers’ urgent demand for high-quality meat by promoting automatic, real-time inspection and quality control in meat production. In the near future, with ever-growing application requirements and research developments, it is a trend to integrate such systems to provide effective solutions for various grain quality evaluation applications.

Hyperspectral imaging and deep learning for quantification of Clostridium sporogenes spores in food products using 1D- convolutional neural networks and random forest model

Clostridium sporogenes spores are used as surrogates for Clostridium botulinum, to verify thermal exposure and lethality in sterilization regimes by food industries. Conventional methods to detect spores are time-consuming and labour intensive. The objectives of this study were to evaluate the feasibility of using hyperspectral imaging (HSI) and deep learning approaches, firstly to identify dead and live forms of C. sporogenes spores and secondly, to estimate the concentration of spores on culture media plates and ready-to-eat mashed potato (food matrix). C. sporogenes spores were inoculated by either spread plating or drop plating on sheep blood agar (SBA) and tryptic soy agar (TSA) plates and by spread plating on the surface of mashed potato. Reflectance in the spectral range of 547-1701 nm from the region of interest was used for principal component analysis (PCA). PCA was successful in distinguishing dead and live spores and different levels of inoculum (10² to 10⁶ CFU/ml) on both TSA and SBA plates, however, was not efficient on the mashed potato (food matrix). Hence, deep learning classification frameworks namely 1D- convolutional neural networks (CNN) and random forest (RF) model were used. CNN model outperformed the RF model and the accuracy for quantification of spores was improved by 4% and 8% in the presence and absence, respectively of dead spores. The screening system used in this study was a combination of HSI and deep learning modelling, which resulted in an overall accuracy of 90-94% when the dead/inactivated spores were present and absent, respectively. The only discrepancy detected was during the prediction of samples with low inoculum levels (<10² CFU/ml). In summary, it was evident that HSI in combination with a deep learning approach showed immense potential as a tool to detect and quantify spores on nutrient media as well as on specific food matrix (mashed potato). However, the presence of dead spores in any sample is postulated to affect the accuracy and would need replicates and confirmatory assays.

A Real-Time Semantic Segmentation Method of Sheep Carcass Images Based on ICNet

How to realize the accurate recognition of 3 parts of sheep carcass is the key to the research of mutton cutting robots. The characteristics of each part of the sheep carcass are connected to each other and have similar features, which make it difficult to identify and detect, but with the development of image semantic segmentation technology based on deep learning, it is possible to explore this technology for real-time recognition of the 3 parts of the sheep carcass. Based on the ICNet, we propose a real-time semantic segmentation method for sheep carcass images. We first acquire images of the sheep carcass and use augmentation technology to expand the image data, after normalization, using LabelMe to annotate the image and build the sheep carcass image dataset. After that, we establish the ICNet model and train it with transfer learning. The segmentation accuracy, MIoU, and the average processing time of single image are then obtained and used as the evaluation standard of the segmentation effect. In addition, we verify the generalization ability of the ICNet for the sheep carcass image dataset by setting different brightness image segmentation experiments. Finally, the U-Net, DeepLabv3, PSPNet, and Fast-SCNN are introduced for comparative experiments to further verify the segmentation performance of the ICNet. The experimental results show that for the sheep carcass image datasets, the segmentation accuracy and MIoU of our method are 97.68% and 88.47%, respectively. The single image processing time is 83 ms. Besides, the MIoU of U-Net and DeepLabv3 is 0.22% and 0.03% higher than the ICNet, but the processing time of a single image is longer by 186 ms and 430 ms. Besides, compared with the PSPNet and Fast-SCNN, the MIoU of the ICNet model is increased by 1.25% and 4.49%, respectively. However, the processing time of a single image is shorter by 469 ms and expands by 7 ms, respectively.

Forensic analysis of beverage stains using hyperspectral imaging

Documentation and analysis of crime scene evidences are of great importance in any forensic investigation. In this paper, we present the potential of hyperspectral imaging (HSI) to detect and analyze the beverage stains on a paper towel. To detect the presence and predict the age of the commonly used drinks in a crime scene, we leveraged the additional information present in the HSI data. We used 12 different beverages and four types of paper hand towel to create the sample stains in the current study. A support vector machine (SVM) is used to achieve the classification, and a convolutional auto-encoder is used to achieve HSI data dimensionality reduction, which helps in easy perception, process, and visualization of the data. The SVM classification model was re-established for a lighter and quicker classification model on the basis of the reduced dimension. We employed volume-gradient-based band selection for the identification of relevant spectral bands in the HSI data. Spectral data recorded at different time intervals up to 72 h is analyzed to trace the spectral changes. The results show the efficacy of the HSI techniques for rapid, non-contact, and non-invasive analysis of beverage stains.

Combining prior knowledge with input selection algorithms for quantitative analysis using neural networks in laser induced breakdown spectroscopy

Laser-induced breakdown spectroscopy (LIBS) is an emerging technique for the analysis of rocks and mineral samples. Artificial neural networks (ANNs) have been used to estimate the concentration of minerals in samples from LIBS spectra. These spectra are very high dimensional data, and it is known that only specific wavelengths have information on the atomic and molecular features of the sample under investigation. This work presents a systematic methodology based on the Akaike information criterion (AIC) for selecting the wavelengths of LIBS spectra as well as the ANN model complexity, by combining prior knowledge and variable selection algorithms. Several variable selection algorithms are compared within the proposed methodology, namely KBest, a least absolute shrinkage and selection operator (LASSO) regularization, principal component analysis (PCA), and competitive adaptive reweighted sampling (CARS). As an illustrative example, the estimation of copper, iron and arsenic concentrations in pelletized mineral samples is performed. A dataset of LIBS emission spectra with 12 287 wavelengths in the range of 185-1049 nm obtained from 131 samples of copper concentrates is used for regression analysis. An ANN is then trained considering the selected reduced wavelength data. The results are satisfactory using LASSO and CARS algorithms along with prior knowledge, showing that the proposed methodology is very effective for selecting wavelengths and model complexity in quantitative analyses based on ANNs and LIBS.

Evaluation of the Changes in Optical Properties of Peaches with Different Maturity Levels during Bruising

The main objective was to measure the optical coefficients of peaches after bruising at different maturity levels and detect bruises. A spatially resolved method was used to acquire absorption coefficient (μ_a) and the reduced scattering coefficient (µ_s') spectra from 550 to 1000 nm, and a total of 12 groups (3 maturity levels * 4 detection times) were used to assess changes in µ_a and µ_s' resulting from bruising. Maturation and bruising both caused a decrease in µ_s' and an increase in µ_a, and the optical properties of immature peaches changed more after bruising than the optical properties of ripe peaches. Four hours after bruising, the optical properties of most samples were significantly different from those of intact peaches (p < 0.05), and the optical properties showed damage to tissue earlier than the appearance symptoms observed with the naked eye. The classification results of the Support Vector Machine model for bruised peaches showed that μ_a had the best classification accuracy compared to μ_s' and their combinations (µ_a × µ_s', µ_eff). Overall, based on μ_a, the average detection accuracies for peaches after bruising of 0 h, 4 h, and 24 h were increased.

Evaluating drying feature differences between ginger slices and splits during microwave-vacuum drying by hyperspectral imaging technique

This study aimed to investigate the difference between ginger slices (vertically cut) and splits (horizontally cut) during microwave-vacuum drying (MVD) procedures. MVD ginger slices showed a higher shrinkage rate and a higher hardness value, with a more porous structure of the surface layer. MVD ginger splits had higher rehydration rates at the first 15 min of the rehydration. Nine optimal wavelengths were selected by regression coefficients (RC) from the partial least squares regression (PLSR) model based on the raw data. A simplified PLSR model based on optimal wavelengths showed a good performance with a coefficient of determination in prediction (Rp2) of 0.973 and a root mean square error in prediction (RMSEP) of 4.63%. Texture features of grey level co-occurrence matrix (GLCM) of moisture prediction maps demonstrated a more uniform moisture distribution in MVD ginger slices than that in splits in the original geometry.

A dataset of visible - short wave infrared reflectance spectra collected in-vivo on the dorsal and ventral aspect of arms

Advancement of technology and device miniaturization have made near infrared spectroscopy (NIRS) techniques cost–effective, small–sized, simple, and ready to use. We applied NIRS to analyze healthy human muscles in vivo, and we found that this technique produces reliable and reproducible spectral “fingerprints” of individual muscles, that can be successfully discriminated by chemometric predictive models. The dataset presented in this descriptor contains the reflectance spectra acquired in vivo from the ventral and dorsal aspects of the arm using an ASD FieldSpec® 4 Standard–Res field portable spectroradiometer (350–2500 nm), the values of the anthropometric variables measured in each subject, and the codes to assist access to the spectral data. The dataset can be used as a reference set of spectral signatures of “biceps” and “triceps” and for the development of automated methods of muscle detection.

Application of hyperspectral technology in detection of agricultural products and food: A Review

Food is the foundation of human survival. With the development and progress of society, people increasingly focus on the problems of food quality and safety, which is closely related to human's health. Thus, the whole industrial chain from farmland to dining table need to be strictly controlled. Traditional detection methods are time-consuming, laborious, and destructive. In recent years, hyperspectral technology has been more and more applied to food safety and quality detection, because the technology can achieve rapid and nondestructive detection of food, and the requirement to experimental condition is low; operability is strong. In this paper, hyperspectral imaging technology was briefly introduced, and its application in agricultural products and food detection in recent years was systematically summarized, and the key points in the research process were deeply discussed. This work lays a solid foundation for the peers to the following in-depth research and application of this technology.

Myoglobin-Based Classification of Minced Meat Using Hyperspectral Imaging

Minced meat substitution is one of the most common frauds which not only affects consumer health but impacts their lifestyles and religious customs as well. A number of methods have been proposed to overcome these frauds; however, these mostly rely on laboratory measures and are often subject to human error. Therefore, this study proposes novel hyperspectral imaging (400–1000 nm) based non-destructive isos-bestic myoglobin (Mb) spectral features for minced meat classification. A total of 60 minced meat spectral cubes were pre-processed using true-color image formulation to extract regions of interest, which were further normalized using the Savitzky–Golay filtering technique. The proposed pipeline outperformed several state-of-the-art methods by achieving an average accuracy of 88.88%.

Hyperspectral Near-Infrared Image Assessment of Surface-Acetylated Solid Wood

Visualization of acetic anhydride flow and its heterogeneity within the wood block necessitates the development of a reliable and robust analytical method. Hyperspectral imaging has the potential to acquire a continuous spectrum of chemical analytes at different spectral channels in terms of pixels. The large set of chemical data (3-dimensional) can be expanded into relevant information in a multivariate fashion. We quantified gradients in acetylation degree over cross sections of Scots pine sapwood caused by a one-sided flow of acetic anhydride into wood blocks using near-infrared hyperspectral imaging. A principal component analysis (PCA) model was used to decompose the high-dimensional data into orthogonal components. Moreover, a partial least-squares (PLS) hyperspectral image regression model was developed to quantify heterogeneity in acetylation degree that was affected by the flow of acetic anhydride through wood blocks and into the tracheid cell walls. The model was validated and optimized with an external test data set and a prediction map using the root-mean-squared error of an individual predicted pixel. The model performance parameters are well suited, and prediction of the acetylation degree at the image level was complemented with confocal Raman imaging of selected areas on the microlevel. NIR image regression showed that the acetylation degree was determined not only by the time-dependent flow of the acetic anhydride through the wood macropores but also by the diffusion of the anhydride into the wood cell walls. Thereby, thin-walled earlywood sections were acetylated faster than the thick-walled latewood sections. Our results demonstrate the suitability of near-infrared imaging as a tool for quality control and process optimization at the industrial scale.

Non-Destructive Imaging and Spectroscopic Techniques for Assessment of Carcass and Meat Quality in Sheep and Goats: A Review

In the last decade, there has been a significant development in rapid, non-destructive and non-invasive techniques to evaluate carcass composition and meat quality of meat species. This article aims to review the recent technological advances of non-destructive and non-invasive techniques to provide objective data to evaluate carcass composition and quality traits of sheep and goat meat. We highlight imaging and spectroscopy techniques and practical aspects, such as accuracy, reliability, cost, portability, speed and ease of use. For the imaging techniques, recent improvements in the use of dual-energy X-ray absorptiometry, computed tomography and magnetic resonance imaging to assess sheep and goat carcass and meat quality will be addressed. Optical technologies are gaining importance for monitoring and evaluating the quality and safety of carcasses and meat and, among them, those that deserve more attention are visible and infrared reflectance spectroscopy, hyperspectral imagery and Raman spectroscopy. In this work, advances in research involving these techniques in their application to sheep and goats are presented and discussed. In recent years, there has been substantial investment and research in fast, non-destructive and easy-to-use technology to raise the standards of quality and food safety in all stages of sheep and goat meat production.

Gastric cancer diagnosis using hyperspectral imaging with principal component analysis and spectral angle mapper

SIGNIFICANCE

Hyperspectral imaging (HSI) is an emerging optical technique that has a double function of spectroscopy and imaging.

AIM

Near-infrared hyperspectral imaging (NIR-HSI) (900 to 1700 nm) with the help of chemometrics was investigated for gastric cancer diagnosis.

APPROACH

Mean spectra and standard deviation of normal and cancerous pixels were extracted. Principal component analysis (PCA) was used to compress the dimension of hypercube data and select the optimal wavelengths. Moreover, spectral angle mapper (SAM) was utilized as chemometrics to discriminate gastric cancer from normal.

RESULTS

Major spectral difference of cancerous and normal gastric tissue was observed around 975, 1215, and 1450 nm by comparison. A total of six wavelengths (i.e., 975, 1075, 1215, 1275, 1390, and 1450 nm) were then selected as optimal wavelengths by PCA. The accuracy using SAM is up to 90% according to hematoxylin-eosin results.

CONCLUSIONS

These results suggest that NIR-HSI has the potential as a cutting-edge optical diagnostic technique for gastric cancer diagnosis with suitable chemometrics.

Combination of spectra and texture data of hyperspectral imaging for prediction and visualization of palmitic acid and oleic acid contents in lamb meat

The feasibility of combining spectral and textural information from hyperspectral imaging to improve the prediction of the C16:0 and C18:1 n9 contents for lamb was explored. 29 and 22 optimal wavelengths were selected for the C16:0 and C18:1 n9 contents, respectively, by conducting the variable combination population analysis-iteratively retaining informative variables (VCPA-IRIV) algorithm. To extract the textural features of images, a gray-level co-occurrence matrix (GLCM) analysis was implemented in the first principal component image. The least squares support vector machine (LSSVM) model and the partial least squares regression (PLSR) model were developed to predict the C16:0 and C18:1 n9 contents from the spectra and the fusion data. The distribution map was visualized using the best model with the imaging process. The results showed that the combination of the spectral and textural information of hyperspectral imaging coupled with the VCPA-IRIV algorithm had strong potential for the prediction and visualization of the C16:0 and C18:1 n9 contents of lamb.

Autofluorescence excitation-emission matrices as a quantitative tool for the assessment of meat quality

Commercially produced meat is currently graded by a complex and partly subjective multiparameter methodology; a quantitative method of grading, using small samples would be desirable. Here, we investigate the correlation between commercial grades of beef and spectral signatures of native fluorophores in such small samples. Beef samples of different commercial grades were characterized by fluorescence spectroscopy complemented by biochemical and histological assessment. The excitation-emission matrices of the specimens reveal five prominent native autofluorescence signatures in the excitation range from 250 to 350 nm, derived mainly from tryptophan and intramuscular fat. We found that these signatures reflect meat grade and can be used for its determination.

Rapid Identification of Rainbow Trout Adulteration in Atlantic Salmon by Raman Spectroscopy Combined with Machine Learning

This study intends to evaluate the utilization potential of the combined Raman spectroscopy and machine learning approach to quickly identify the rainbow trout adulteration in Atlantic salmon. The adulterated samples contained various concentrations (0-100% w/w at 10% intervals) of rainbow trout mixed into Atlantic salmon. Spectral preprocessing methods, such as first derivative, second derivative, multiple scattering correction (MSC), and standard normal variate, were employed. Unsupervised algorithms, such as recursive feature elimination, genetic algorithm (GA), and simulated annealing, and supervised K-means clustering (KM) algorithm were used for selecting important spectral bands to reduce the spectral complexity and improve the model stability. Finally, the performances of various machine learning models, including linear regression, nonlinear regression, regression tree, and rule-based models, were verified and compared. The results denoted that the developed GA-KM-Cubist machine learning model achieved satisfactory results based on MSC preprocessing. The determination coefficient (R2) and root mean square error of prediction sets (RMSEP) in the test sets were 0.87 and 10.93, respectively. These results indicate that Raman spectroscopy can be used as an effective Atlantic salmon adulteration identification method; further, the developed model can be used for quantitatively analyzing the rainbow trout adulteration in Atlantic salmon.

Species-Specific Biodegradation of Sporopollenin-Based Microcapsules

Sporoderms, the outer layers of plant spores and pollen grains, are some of the most robust biomaterials in nature. In order to evaluate the potential of sporoderms in biomedical applications, we studied the biodegradation in simulated gastrointestinal fluid of sporoderm microcapsules (SDMCs) derived from four different plant species: lycopodium (Lycopodium clavatum L.), camellia (Camellia sinensis L.), cattail (Typha angustifolia L.), and dandelion (Taraxacum officinale L.). Dynamic image particle analysis (DIPA) and field-emission scanning electron microscopy (FE-SEM) were used to investigate the morphological characteristics of the capsules, and Fourier-transform infrared (FTIR) spectroscopy was used to evaluate their chemical properties. We found that SDMCs undergo bulk degradation in a species-dependent manner, with camellia SDMCs undergoing the most extensive degradation, and dandelion and lycopodium SDMCs being the most robust.

Near-infrared spectroscopy as a tool for in vivo analysis of human muscles

Recent advances in materials and fabrication techniques provided portable, performant, sensing optical spectrometers readily operated by user-friendly cabled or wireless systems. Such systems allow rapid, non-invasive, and not destructive quantitative analysis of human tissues. This proof-of-principle investigation tested whether infrared spectroscopy techniques, currently utilized in a variety of areas, could be applied in living humans to categorize muscles. Using an ASD FieldSpec® 4 Standard-Res Spectroradiometer with a spectral sampling capability of 1.4 nm at 350–1000 nm and 1.1 nm at 1001–2500 nm, we acquired reflectance spectra in visible short-wave infra-red regions (350–2500 nm) from the upper limb muscles (flexors and extensors) of 20 healthy subjects (age 25–89 years, 9 women). Spectra off-line analysis included preliminary preprocessing, Principal Component Analysis, and Partial Least-Squares Discriminant Analysis. Near-infrared (NIR) spectroscopy proved valuable for noninvasive assessment of tissue optical properties in vivo. In addition to the non-invasive detection of tissue oxygenation, NIR spectroscopy provided the spectral signatures (ie, “fingerprints”) of upper limb flexors and extensors, which represent specific, accurate, and reproducible measures of the overall biological status of these muscles. Thus, non-invasive NIR spectroscopy enables more thorough evaluation of the muscular system and optimal monitoring of the effectiveness of therapeutic or rehabilitative interventions.

Applications of Photonics in Agriculture Sector: A Review

The agricultural industry has made a tremendous contribution to the foundations of civilization. Basic essentials such as food, beverages, clothes and domestic materials are enriched by the agricultural industry. However, the traditional method in agriculture cultivation is labor-intensive and inadequate to meet the accelerating nature of human demands. This scenario raises the need to explore state-of-the-art crop cultivation and harvesting technologies. In this regard, optics and photonics technologies have proven to be effective solutions. This paper aims to present a comprehensive review of three photonic techniques, namely imaging, spectroscopy and spectral imaging, in a comparative manner for agriculture applications. Essentially, the spectral imaging technique is a robust solution which combines the benefits of both imaging and spectroscopy but faces the risk of underutilization. This review also comprehends the practicality of all three techniques by presenting existing examples in agricultural applications. Furthermore, the potential of these techniques is reviewed and critiqued by looking into agricultural activities involving palm oil, rubber, and agro-food crops. All the possible issues and challenges in implementing the photonic techniques in agriculture are given prominence with a few selective recommendations. The highlighted insights in this review will hopefully lead to an increased effort in the development of photonics applications for the future agricultural industry.

Integration of spectral and textural features of visible and near-infrared hyperspectral imaging for differentiating between normal and white striping broiler breast meat

White striping (WS), an emerging muscle myopathy in poultry industry, is gaining increasing attention globally. In this study, visible and near-infrared hyperspectral imaging (HSI, 400-1000 nm) was investigated for developing an optical sensing technique to differentiate WS broiler breast fillets (pectoralis major) from normal fillets. The minimum noise fraction (MNF), followed by an inverse MNF (IMNF), was conducted to improve the signal-to-noise ratio of hyperspectral images during the pre-processing process. Three regions of interest (ROIs) were selected at cranial, middle and caudal locations within each fillet image. Spectral principal component analysis (PCA) revealed that PC₂ and PC₃ were effective for the differentiation and key wavelengths (450, 492, 541, 581, 629, 869 and 980 nm) were selected from the corresponding PC loadings. Spatial texture features on corresponding score images were obtained using gray level co-occurrence matrix (GLCM) and grayscale histogram statistics (GHS), respectively. Partial least squares discriminant analysis (PLS-DA) models were evaluated with various inputs including spectral (full and key wavelengths), textural and fused features. GLCM features improved performance of multispectral imaging with the highest correct classification rate (CCR) of 91.7%, AUC value (0.917), and Kappa coefficient (0.833) for prediction set. Considering the complexity and heterogeneity of meat samples at different locations, the optimal sampling location was also analyzed and results provided the evidence that the cranial location worked most effectively for the differentiation between normal and WS samples. Overall, results confirmed the great potential of HSI in range of 400-1000 nm in differentiation between normal and WS chicken breast meat.

Advances in Sheep and Goat Meat Products Research

The main goal of this chapter was to review the state of the art in the recent advances in sheep and goat meat products research. Research and innovation have been playing an important role in sheep and goat meat production and meat processing as well as food safety. Special emphasis will be placed on the imaging and spectroscopic methods for predicting body composition, carcass and meat quality. The physicochemical and sensory quality as well as food safety will be referenced to the new sheep and goat meat products. Finally, the future trends in sheep and goat meat products research will be pointed out.

Identification of Maize Kernel Vigor under Different Accelerated Aging Times Using Hyperspectral Imaging

Seed aging during storage is irreversible, and a rapid, accurate detection method for seed vigor detection during seed aging is of great importance for seed companies and farmers. In this study, an artificial accelerated aging treatment was used to simulate the maize kernel aging process, and hyperspectral imaging at the spectral range of 874⁻1734 nm was applied as a rapid and accurate technique to identify seed vigor under different accelerated aging time regimes. Hyperspectral images of two varieties of maize processed with eight different aging duration times (0, 12, 24, 36, 48, 72, 96 and 120 h) were acquired. Principal component analysis (PCA) was used to conduct a qualitative analysis on maize kernels under different accelerated aging time conditions. Second-order derivatization was applied to select characteristic wavelengths. Classification models (support vector machine-SVM) based on full spectra and optimal wavelengths were built. The results showed that misclassification in unprocessed maize kernels was rare, while some misclassification occurred in maize kernels after the short aging times of 12 and 24 h. On the whole, classification accuracies of maize kernels after relatively short aging times (0, 12 and 24 h) were higher, ranging from 61% to 100%. Maize kernels with longer aging time (36, 48, 72, 96, 120 h) had lower classification accuracies. According to the results of confusion matrixes of SVM models, the eight categories of each maize variety could be divided into three groups: Group 1 (0 h), Group 2 (12 and 24 h) and Group 3 (36, 48, 72, 96, 120 h). Maize kernels from different categories within one group were more likely to be misclassified with each other, and maize kernels within different groups had fewer misclassified samples. Germination test was conducted to verify the classification models, the results showed that the significant differences of maize kernel vigor revealed by standard germination tests generally matched with the classification accuracies of the SVM models. Hyperspectral imaging analysis for two varieties of maize kernels showed similar results, indicating the possibility of using hyperspectral imaging technique combined with chemometric methods to evaluate seed vigor and seed aging degree.

A Reliable Methodology for Determining Seed Viability by Using Hyperspectral Data from Two Sides of Wheat Seeds

This study investigated the possibility of using visible and near-infrared (VIS/NIR) hyperspectral imaging techniques to discriminate viable and non-viable wheat seeds. Both sides of individual seeds were subjected to hyperspectral imaging (400-1000 nm) to acquire reflectance spectral data. Four spectral datasets, including the ventral groove side, reverse side, mean (the mean of two sides' spectra of every seed), and mixture datasets (two sides' spectra of every seed), were used to construct the models. Classification models, partial least squares discriminant analysis (PLS-DA), and support vector machines (SVM), coupled with some pre-processing methods and successive projections algorithm (SPA), were built for the identification of viable and non-viable seeds. Our results showed that the standard normal variate (SNV)-SPA-PLS-DA model had high classification accuracy for whole seeds (>85.2%) and for viable seeds (>89.5%), and that the prediction set was based on a mixed spectral dataset by only using 16 wavebands. After screening with this model, the final germination of the seed lot could be higher than 89.5%. Here, we develop a reliable methodology for predicting the viability of wheat seeds, showing that the VIS/NIR hyperspectral imaging is an accurate technique for the classification of viable and non-viable wheat seeds in a non-destructive manner.

Application of hyperspectral imaging and chemometrics for variety classification of maize seeds

Hyperspectral imaging provides an effective way for seed variety classification for assessing variety purity and increasing crop yield.

Prediction of banana color and firmness using a novel wavelengths selection method of hyperspectral imaging

This study investigated the feasibility of using hyperspectral imaging for determining banana color (L^∗, a^∗ and b^∗) and firmness as well as classifying ripe and unripe samples. The hyperspectral images at wavelengths 380-1023nm were acquired. Partial least squares (PLS) models were built to predict color and firmness. Two-wavelength combination method λ_i-λ_jλ_i+λ_j,λ_i²-λ_j²λ_i²+λ_j²,λ_iλ_jandλ_i-λ_j was used to identify the effective wavelengths. Based on the selected wavelengths, PLS models obtained good results with the coefficient of determination in prediction (R_p²) of 0.795 for L^∗, 0.972 for a^∗, 0.773 for b^∗ and 0.760 for firmness. The corresponding residual predictive deviation (RPD) values were 2.234, 6.098, 2.119 and 2.062, respectively. The classification results of ripe and unripe samples were excellent in two different principal components spaces (PC1+PC2 and PC1+PC3). It indicated hyperspectral imaging can be used to non-destructively determine banana color and firmness as well as classify ripe and unripe samples.