Rahnella sp. LRP3 induces phosphate precipitation of Cu (II) and its role in copper-contaminated soil remediation

Bioactive Compounds Produced by Endophytic Bacteria and Their Plant Hosts-An Insight into the World of Chosen Herbaceous Ruderal Plants in Central Europe

The natural environment has been significantly impacted by human activity, urbanization, and industrialization, leading to changes in living organisms and their adaptation to harsh conditions. Species, including plants, adapt to these changes by creating mechanisms and modifications that allow them to survive in harsh environments. Also, endophytes, microorganisms that live inside plants, can support plant growth and defense mechanisms in these conditions by synthesizing antimicrobial secondary metabolites. What is more, endophytes produce bioactive metabolites, including alkaloids, amines, and peptides, which play a crucial role in the relationship between endophytes and their host organisms. Endophytes themselves benefit from this by creating a stable environment for their survival and development. The aim of this review is to gain insight into endophytic bioactive metabolites from chosen synanthropic ruderal plants. Industrial activities release pollutants like heavy metals, by-products, and waste, which challenge living organisms and require adaptation. Synanthropic plants, where endophytes are abundant, are particularly valuable for their bioactive compounds, which are used in agriculture and medicine. This review presents, among others, endophytes of herbaceous ruderal plants from central Europe-Chelidonium majus L., Urtica dioica L., Plantago lanceolata L., Matricaria chamomilla L., Equisetum arvense L., Oenothera biennis L., Silybum marianum L., and Mentha piperita L.

Effect of phosphate-mineralized bacteria on multi-metals migration behavior in vanadium tailing slags: Coexistence of immobilization and mobilization

Biomineralization techniques have been utilized to remediate heavy metals (HMs) contaminated environments. However, the effect of microbial-induced phosphate precipitation (MIPP) on HMs behavior in vanadium tailing slags has not been revealed. This study is the first to report the influence of MIPP on multiple HMs including Cd, Cu, Pb and Zn in the slags with and without soil mixing. The results showed that MIPP exhibited excellent ability for Cd immobilization, Cd immobilization rate reached 43.41 % under the optimal parameters within 7 days. Cd immobilization performance was significantly improved and sustained after the slags were covered with soil, resulting from better colonization of phosphate mineralizing bacteria in slag-soil mixtures. Surprisingly, DTPA-Cu, Zn and Pb contents in slags were all increased to varying degrees after MIPP treatment. Leaching solution mineralization tests further suggested that MIPP significantly reduced the concentration of Cd2+, Pb2+, Ca2+, Mg2+ and Al3+, but barely changed Cu2+ and Zn2+ concentrations. Characterization analysis confirmed that formation of phosphates including Cd(PO4)2 and dissolution of minerals including PbZnSiO2 were the reason for HMs immobilization and mobilization in vanadium tailing slags. This study provides new insights for understanding biomineralization technology and using MIPP to remediate HMs contaminated mine waste.

Immobilization of Pb(II) by Bacillus megaterium-based microbial-induced phosphate precipitation (MIPP) considering bacterial phosphorolysis ability and Ca-mediated alleviation of lead toxicity

Inappropriate handling of lead (Pb)-containing wastewater that is produced as a result of smelting activities threatens the surrounding environment and human health. The microbial-induced phosphate precipitation (MIPP) technology was applied to immobilize Pb2+ in an aqueous solution considering bacterial phosphorolysis ability and Ca-mediated alleviation of lead toxicity. Pb immobilization was accompanied by sample characterization in order to explore the inherent mechanism that affected the immobilization efficiency. Results showed that Ca2+ use elevated the immobilization efficiency through the prevention of bacterial physisorption and chemisorption, an enhancement to the phosphatase activity and the degree of SGP hydrolysis, and the provision of nucleation sites for Pb2+ to attach. The formation of the Pb-GP complex helped the bacteria to maintain its activity at the commencement of catalyzing SGP hydrolysis. The nucleated minerals that were precipitated in a columnar shape through a directional stacking manner under MIPP featured higher chemical stability compared to non-nucleated minerals. As a result, there were three pathways, namely, bacterial physisorption, bacterial chemisorption, and substrate chelation, applied for Pb immobilization. The immobilization efficiency of 99.6% is achieved by precipitating bioprecipitates including Pb5(PO4)3Cl, Pb10(PO4)6Cl2, and Ca2Pb3(PO4)3Cl. The findings accentuate the potential of applying the MIPP technology to Pb-containing wastewater remediation.

Comprehensive bioremediation effect of phosphorus-mineralized bacterium Enterobacter sp. PMB-5 on cadmium contaminated soil-crop system

Phosphate-mineralizing bacteria (PMBs) have been widely studied by inducing phosphate heavy metal precipitation, but current researches neglect to study their effects on soil-microbe-crop systems on cadmium (Cd) contaminated. Based on this, a strain PMB, Enterobacter sp. PMB-5, was inoculated into Cd contaminated pots to detect soil characteristics, Cd occurrence forms, soil biological activities, plant physiological and biochemical indicators. The results showed that the inoculation of strain PMB-5 significantly increased the available phosphorus content (85.97%-138.64%), Cd-residual fraction (11.04%-29.73%), soil enzyme activities (31.94%-304.63%), plant biomass (6.10%-59.81%), while decreased the state of Cd-HOAc (11.50%-31.17%) and plant bioconcentration factor (23.76%-44.24%). These findings indicated that strain PMB-5 could perform the function of phosphorus solubilization to realize the immobilization of Cd in the complex soil environment. Moreover, SEM-EDS, FTIR, XPS, and XRD analysis revealed that strain PMB-5 does not significantly alter the soil morphology, structure, elemental distribution, and chemical composition, which suggested that remediation of Cd contamination using strain PMB-5 would not further burden the soil. This research implies that PMB-5 could be a safe and effective bioinoculant for remediating Cd-contaminated soils, contributing to the sustainable management of soil health in contaminated environments.

Copper recovery from waste printed circuit boards using pyrite as the bioleaching substrate

Waste printed circuit boards (WPCBs) can be bioleached for Cu recovery, but lack of substrate for the bioleaching culture. In this study, using pyrite as a bacterial substrate for bioleaching WPCBs and recovering Cu was explored. The results showed that the WPCBs bioleaching using pyrite as the bacterial substrate was feasible. Mechanical crushing was a suitable WPCBs pretreatment method. The optimal WPCBs and pyrite pulp densities were respectively found to be 1.25% (w/v) and 1.0% (w/v), and the suitable nitrogen source ratio ((NH4)2SO4: (NH4)2HPO4) was deemed as 2 g/L: 2 g/L, achieving a Cu2+ leaching efficiency of 95.60 ± 1.57% in 14 d. Copper in the bioleaching solution can be directly recovery via electrodeposition. The Cu recovery efficiency in 60 min was up to 92.19 ± 1.35% under the optimal condition that the initial Cu2+ concentration and pH were respectively set at 7.34 g/L and 2.75, and the current density was set at 200 A/m2. Copper was found as the dominant metal in the cathode deposits, existing in the form of Cu and Cu2O. This work provided a novel approach for bioleaching WPCBs and recovering Cu.

Comparison of bio-beads combined with Pseudomonas edaphica and three phosphate materials for lead immobilization: Performance, mechanism and plant growth

Phosphate materials (PMs) combine with phosphate solubilizing bacteria play an essential roles in lead (Pb) immobilization, but their resulting ability to reduce Pb bioavailability may vary depending on PMs used. In this study, Pseudomonas edaphica GAU-665 and three PMs: tricalcium phosphate, calcium phytate and nano-hydroxyapatite were respectively encapsulated into bio-beads by sodium alginate, which immobilization efficiency of Pb2+ were 99.11%, 97.76% and 99.02% at initial Pb2+ concentration of 200 mg L-1, respectively. The Pb2+ immobilization performance of bio-beads under different conditions and their organic acids secreted were examined. Most Pb2+ was immobilized by bio-beads through combined functions of adsorption, precipitation, ion exchange and biomineralization, accompanied by the formation of more stable compounds such as Pb3(PO4)2, Pb5(PO4)3OH and Pb5(PO4)3Cl. Meanwhile, pot experimental results indicated that the inoculation of CPhy (calcium phytate) bio-beads with PSB have highest biomass and root growth of oat (Avena sativa L.) in Pb-stressed compared with CK, which increased the content of chlorophyll b (167.51%) in shoot. In addition, the CPhy bio-beads enhance the peroxidase, catalase activities and reduce the malondialdehyde content to alleviating lead physiological toxicity in oat, which reductions the Pb accumulation in shoot (52.06%) and root (81.04%), and increased the residual fraction of Pb by 165.80% in soil. These findings suggest the bio-beads combined with P. edaphica GAU-665 and calcium phytate is an efficient Pb immobilization material and provided feasible way to improve safety agricultural production and Pb-contaminated soil remediation.

Different survival strategies of the phosphate-mineralizing bacterium Enterobacter sp. PMB-5 in response to cadmium stress: Biomineralization, biosorption, and bioaccumulation

The phosphate-mineralizing bacteria (PMBs) has shown great potential as a sustainable solution to support pollution remediation through its induced mineralization capacity. However, few studies have been conducted on the mechanism of cadmium (Cd) tolerance in PMBs. In this study, a PMB strain, Enterobacter sp. PMB-5, screened from Cd-contaminated rhizosphere soil, has high resistance to Cd (540 - 1220 mg/L) and solubilized phosphate (232.08 mg/L). The removal experiments showed that the strain PMB-5 removed 71.69-98.24% and 34.83-76.36% of Cd with and without biomineralization, respectively. The characterization result of SEM, EDS, TEM, XPS and XRD revealed that PMB-5 induced Cd to form amorphous phosphate precipitation through biomineralization and adopted different survival strategies, including biomineralization, bioaccumulation, and biosorption to resistance Cd in the microbial induced phosphate precipitation (MIPP) system and the non-MIPP system, respectively. Moreover, the results of whole genome sequencing and qRT-PCR indicated that phosphorus metabolism genes such as pst, pit, phn, ugp, ppk, etc. and heavy metal tolerance genes (including ion transport, ion efflux, redox, antioxidant stress), such as czcD, zntA, mgtA, mgtC, katE, SOD2, dsbA, cysM, etc. were molecular for the PMB-5 mineralization and Cd tolerance of PMB-5. Together, our findings suggested Enterobacter sp. PMB-5 is a potential target for developing more effective bioinoculants for Cd contamination remediation.

Microbial induced carbonate precipitation for remediation of heavy metals, ions and radioactive elements: A comprehensive exploration of prospective applications in water and soil treatment

Improper disposal practices have caused environmental disruptions, possessing by heavy metal ions and radioactive elements in water and soil, where the innovative and sustainable remediation strategies are significantly imperative in last few decades. Microbially induced carbonate precipitation (MICP) has emerged as a pioneering technology for remediating contaminated soil and water. Generally, MICP employs urease-producing microorganisms to decompose urea (NH2CONH2) into ammonium (NH4+and carbon dioxide (CO2), thereby increasing pH levels and inducing carbonate precipitation (CO32-), and effectively removing remove contaminants. Nonetheless, the intricate mechanism underlying heavy metal mineralization poses a significant challenge, constraining its application in contaminants engineering, particularly in the context of prolonged heavy metal leaching over time and its efficacy in adverse environmental conditions. This review provides a comprehensive idea of recent development of MICP and its application in environmental engineering, examining metabolic pathways, mineral precipitation mechanisms, and environmental factors as well as providing future perspectives for commercial utilization. The use of ureolytic bacteria in MICP demonstrates cost-efficiency, environmental compatibility, and successful pollutant abatement over tradition bioremediation techniques, and bio-synthesis of nanoparticles. limitations such as large-scale application, elevated Ca2+levels in groundwater, and gradual contaminant release need to be overcome. The possible future research directions for MICP technology, emphasizing its potential in conventional remediation, CO2 sequestration, bio-material synthesis, and its role in reducing environmental impact for long-term economic benefits.

The copper resistance mechanism in a newly isolated Pseudoxanthomonas spadix ZSY-33

Resolving the heavy metal resistance mechanisms of microbes is crucial for understanding the bioremediation of the ecological environment. In this study, a multiple heavy metal resistance bacterium, Pseudoxanthomonas spadix ZSY-33 was isolated and characterized. The copper resistance mechanism was revealed by analysis of the physiological traits, copper distribution, and genomic and transcriptomic data of strain ZSY-33 cultured with different concentrations of copper. The growth inhibition assay in basic medium showed that the growth of strain ZSY-33 was inhibited in the presence of 0.5 mM copper. The production of extracellular polymeric substances increased at a lower concentration of copper and decreased at a higher concentration of copper. Integrative analysis of genomic and transcriptomic, the copper resistance mechanism in strain ZSY-33 was elucidated. At a lower concentration of copper, the Cus and Cop systems were responsible for the homeostasis of intracellular copper. As the concentration of copper increased, multiple metabolism pathways, including the metabolism of sulfur, amino acids, and pro-energy were cooperated with the Cus and Cop systems to deal with copper stress. These results indicated a flexible copper resistance mechanism in strain ZSY-33, which may acquire from the long-term interaction with the living environment.

Biopolymer-assisted enzyme-induced carbonate precipitation for immobilizing Cu ions in aqueous solution and loess

Wastewater, discharged in copper (Cu) mining and smelting, usually contains a large amount of Cu2+. Immobilizing Cu2+ in aqueous solution and soils is deemed crucial in preventing its migration into surrounding environments. In recent years, the enzyme-induced carbonate precipitation (EICP) has been widely applied to Cu immobilization. However, the effect of Cu2+ toxicity denatures and even inactivates the urease. In the present work, the biopolymer-assisted EICP technology was proposed. The inherent mechanism affecting Cu immobilization was explored through a series of test tube experiments and soil column tests. Results indicated that 4 g/L chitosan may not correspond to a higher immobilization efficiency because it depends as well on surrounding pH conditions. The use of Ca2+ not only played a role in further protecting urease and regulating the environmental pH but also reduced the potential for Cu2+ to migrate into nearby environments when malachite and azurite minerals are wrapped by calcite minerals. The species of carbonate precipitation that are recognized in the numerical simulation and microscopic analysis supported the above claim. On the other hand, UC1 (urease and chitosan colloid) and UC2 (urea and calcium source) grouting reduced the effect of Cu2+ toxicity by transforming the exchangeable state-Cu into the carbonate combination state-Cu. The side effect, induced by 4 g/L chitosan, promoted the copper-ammonia complex formation in the shallow ground, while the acidic environments in the deep ground prevented Cu2+ from coordinating with soil minerals. These badly degraded the immobilization efficiency. The Raman spectroscopy and XRD test results tallied with the above results. The findings shed light on the potential of applying the biopolymer-assisted EICP technology to immobilizing Cu ions in water bodies and sites.

A preliminary study to explain how Streptomyces pactum (Act12) works on phytoextraction: soil heavy metal extraction, seed germination, and plant growth

Streptomyces pactum (Act12) can both promote plant growth and strengthen heavy metal mobilization. Nevertheless, the mechanisms of how Act12 works during the phytoextraction process are still unknown. The present work investigated whether the metabolites produced by Act12 could influence the seed germination and the growth of potherb mustard and explored its mobilizing effect on soil cadmium (Cd) and zinc (Zn). The results showed that the germination potential and rate of potherb mustard seed treated with Act12 fermentation broth were 1.0- and 0.32-folds higher than those of control, probably due to the interruption of seed dormant stage. We also found that Act12 inoculation not only promoted the dry biomass (6.82%) of potherb mustard, but also increased the leaf chlorophyll (11.8%) and soluble protein (0.35%) production. The boosted seed germination rate under Act12 treatment (up to 63.3%) indicated that Act12 enhanced the resistance of potherb mustard seeds to Cd and Zn and alleviated their physiological toxicity. The generated metabolites during the Act12 fermentation posed positive impact on the availability of soil Cd and Zn. These findings bring new insight into the Act12-assisted phytoextraction of Cd and Zn from contaminated soils.

Stabilization of Pb(II) in wastewater and tailings by commercial bacteria through microbially induced phosphate precipitation (MIPP)

Microbially induced phosphate precipitation (MIPP) is an effective and eco-friendly method for Pb(II) stabilization. The phosphate-solubilizing microorganisms (PSM) for MIPP are commonly isolated from Pb(II)-contaminated sites through a series of intricate and time-consuming enrichment and purification processes. This research used ready-made commercial bacteria to develop a simple MIPP process. Bacillus subtilis (BS, CCTCC AB 98002) was selected from two commercial PSM strains owing to more effective Pb(II) removal. Compared to the most isolated microorganisms, BS released more than twice as much inorganic phosphorus (Pi) as well as had a high-level Pb(II) tolerance. BS could remove >99% of Pb(II) from 500 mg/L Pb(II)-containing water at the optimal 0.05 M sodium glycerophosphate (SGP), pH 7-9, and ≤0.03 M MgCl₂, outperforming most isolated microorganisms. In addition, BS could mitigate the contamination risk of the lead‑zinc tailings, by reducing the readily leachable Pb(II) concentration from 0.81 mg/L (over the regulatory limit of 0.1 mg/L) to 0.00042 mg/L. The unstable Pb(II) in the solution and tailings was ultimately stabilized to Pb₅(PO₄)₃Cl after the SGP phosphorlysis and phosphate precipitation processes. In conclusion, commercial BS is a superior alternative to isolated microorganisms for MIPP on Pb(II) stabilization. The simple-processed and high-effective BS-based MIPP provides the MIPP method a new insight for widespread implementation in the remediation of heavy metals-containing wastewater, soil, and waste.

Anaerobic syntrophic system composed of phosphate solubilizing bacteria and dissimilatory iron reducing bacteria induces cadmium immobilization via secondary mineralization

Secondary mineralization is a promising method for remediating cadmium (Cd) pollution in sediments, but the poor stability of Cd-containing secondary minerals is a bottleneck that limits the development of this approach. The existence of phosphate can enhance the formation of stable secondary minerals and points a new direction for Cd immobilization. In this research, a novel syntrophic system composed of phosphate solubilizing bacteria (PSB) and dissimilatory iron reducing bacteria (DIRB) was established and the effect and mechanism of Cd immobilization in the system were also explored. The results showed that under the conditions of DIRB:PSB (V:V)= 3:1, syntrophic bacteria dosage of 5% and glucose dosage of 5 g/L, Cd incorporated in the secondary minerals could account for about 60% of the total Cd. In the pH range of 5-9, alkaline environment was conducive to the immobilization of Cd and the percentage of combined Cd was up to 58%, while the combined Cd in secondary minerals decreased from 62% to 56% with the increase of initial Cd concentration from 0.1 to 0.3 mmol/L. In addition, XRD, XPS, Mössbauer and other characterization results showed that secondary minerals, such as Cd exchange hydroxyapatite (Cd-HAP) and kryzhanovskite (Fe₃(PO₄)₂(OH)₃) were formed in this new system. The established syntrophic system of PSB and DIRB is thus a prospective bioremediation technology for Cd immobilization in sediments and can avoid the potential risk might be caused by the addition of phosphorus-containing materials.

Periplasmic space is the key location for Pb(II) biomineralization by Burkholderia cepacia

Phosphate solubilizing bacteria (PSB) induced phosphate precipitation is considered as an effective method for Pb(II) removal through the formation of stable Pb(II)-phosphate compound, but the location of end-products is still unclear. Herein, the PSB strain of Burkholderia cepacia (B. cepacia) coupled with the hydroxyapatite (HAP) was used in this study to investigate the Pb(II) removal mechanism and the biomineralization location. The dissolving phosphate of three particle sizes of HAP and Pb(II) resistant capabilities, and the effect factors such as HAP dosage, initial concentrations of Pb(II), pH, temperature, and different treatments were determined. The results indicated that the highest soluble phosphate could reach 224.85 mg/L in a 200 nm HAP medium and the highest removal efficiency of Pb(II) was about 96.32 %. Additionally, it was interesting that Pb(II) was mainly located in the periplasmic space through the cellular distribution experiment, which was further demonstrated by scanning electron microscope (SEM) and transmission electron microscopy (TEM). Besides, the characterization results showed that the functional groups such as amide, hydroxy, carboxy and phosphate played an important role in Pb(II) biomineralization, and the free Pb(II) in aqueous solution could be transformed into pyromorphite through phosphate dissolution, extracellular adsorption/complexation, and intracellular precipitation.

Enhanced Cd(II) biomineralization induced by microalgae after cultivating modification in high-phosphorus culture

In this study, high-phosphorus beared microalgae was prepared by cultivating modification in high-phosphorus culture, and used for the enhanced Cd(II) biomineralization in soil. Batch experiment results showed that Chlorella sorokiniana FK was modified successfully in highly phosphate culture. Both intracellular P (Poly-P, 29.7 mg/kg) and surface P (phosphoryl based functional groups, 3.7 mol/kg) were greatly enhanced, and the Cd(II) removal capacity surged to 45.98 mg/g at equilibrium in the Langmuir simulation. The EXAFS analysis indicated that Cd tended to form a more stable bidentate complex (RPO₄)₂Cd when bounding with phosphate groups on the surface of the high-phosphorus microalgae. Moreover, high-phosphorus beared microalgae not only had higher immobilization amount of Cd(II), but also promoted immobilized Cd from adsorbed state to mineralized state. After high-phosphate cultured, increased density of P-related groups provided more adsorption sites, while the decomposition of intracellular Poly-P released phosphate ions into cell surface microenvironment, which combined and promoted the formation of Cd₃(PO₄)₂/Cd(H₂PO₄)₂ on cell surface. Cd-contaminated soil remediation experiments applying high-surface-phosphate beared microalgae further showed that more Cd stabilized as a residue fraction within 49 days. This study proposes that the high-phosphate culture strategy is a good way to improve the immobilization of heavy metals in soil induced by microorganisms.

Remediation of chromium, zinc, arsenic, lead and antimony contaminated acidic mine soil based on Phanerochaete chrysosporium induced phosphate precipitation

Microbial induced phosphate precipitation (MIPP) is an advanced bioremediation technology to reduce the mobility and bioavailability of heavy metals (HMs), but the high level of HMs would inhibit the growth of phosphate solubilizing microbes. This study proposed a new combination system for the remediation of multiple HMs contaminated acidic mine soil, which included hydroxyapatite (HAP) and Phanerochaete chrysosporium (P. chrysosporium, PC) that had high phosphate solubilizing ability and HMs tolerance. Experimental data suggested that in HAP/PC treatment after 35 d of remediation, labile Cr, Zn and As could be transformed into the stable fraction with the maximum immobilization efficiencies increased by 53.01 %, 22.43 %, and 35.65 %, respectively. The secretion of organic acids by P. chrysosporium was proved to promote the dissolution of HAP. Besides, the pH value, available phosphorus (AP) and organic matter (OM) increased in treated soil than in original soil, which also indicated the related dissolution-precipitation mechanism of HMs immobilization. Additionally, characterization results revealed that adsorption and ion exchange also played an important role in the remediation process. The overall results suggested that applying P. chrysosporium coupled with HAP could be considered as an efficient strategy for the remediation of multiple HMs contaminated mine soil and laid a foundation for the future exploration of soil microenvironment response during the remediation process.

Pathogenic bacteria significantly increased under oxygen depletion in coastal waters: A continuous observation in the central Bohai Sea

The spread of pathogenic bacteria in coastal waters endangers the health of the local people and jeopardizes the safety of the marine environment. However, their dynamics during seasonal hypoxia in the Bohai Sea (BHS) have not been studied. Here, pathogenic bacteria were detected from the 16S rRNA gene sequencing database and were used to explore their dynamics and driving factors with the progressively deoxygenating in the BHS. Our results showed that pathogenic bacteria were detected in all samples, accounting for 0.13 to 24.65% of the total number of prokaryotic sequences in each sample. Pathogenic Proteobacteria was dominated in all samples, followed by Firmicutes, Actinobacteria, Tenericutes, and Bacteroidetes, etc. β-diversity analysis showed that pathogenic bacteria are highly temporally heterogeneous and regulated by environmental factors. According to RDA analysis, these variations may be influenced by salinity, ammonia, DO, phosphate, silicate, and Chl a. Additionally, pathogenic bacteria in surface water and hypoxia zone were found to be significantly separated in August. The vertical distribution of pathogenic bacterial communities is influenced by several variables, including DO and nutrition. It is noteworthy that the hypoxia zones increase the abundance of certain pathogenic genera, especially Vibrio and Arcobacter, and the stability of the pathogenic bacterial community increased from May to August. These phenomena indicate that the central Bohai Sea is threatened by an increasingly serious pathogenic community from May to August. And the developing hypoxia zone in the future may intensify this phenomenon and pose a more serious threat to human health. This study provides new insight into the changes of pathogenic bacteria in aquatic ecosystems and may help to make effective policies to control the spread of pathogenic bacteria.

Immobilization of hexavalent chromium in soil-plant environment using calcium silicate hydrate synthesized from coal gangue

The presence of excessive hexavalent chromium (Cr(VI)) in the contaminated soils and plants has become a global environmental issue due to its toxicity and carcinogenicity. This work investigated the feasibility of immobilizing Cr(VI) in the soil-plant environment using calcium silicate hydrate (C-S-H) synthesized from coal gangue. The results revealed that the C-S-H amendment increased soil pH and organic matter (OM), which further promoted Cr(VI) immobilization. Results also revealed that exchangeable and carbonate bound fractions of Cr were either converted into Fe/Mn oxide and OM bound fractions of Cr or hardly released residual fraction of Cr due to C-S-H treatment. The C-S-H accelerated conversion of Cr(VI) into Cr(III) promoting plant growth and alleviating the toxic effect of Cr(VI). Cr(VI) was mainly immobilized and accumulated in the plant roots which resulted in comparatively lower Cr(VI) content in the edible part of plants. The exchangeable fraction of Cr in soil could be used as a bioavailability evaluation index of Cr(VI) in plants. In short, C-S-H was proved to be a practical and environmentally friendly amendment for in-situ immobilization of Cr(VI) contaminated soil.

Recent advances in soil remediation technology for heavy metal contaminated sites: A critical review

With the increasing development of industry and urbanization, heavy metal contaminated sites have become progressively conspicuous, particularly by unreasonable emissions from electroplating, nonferrous metals smelting, mine tailing, etc. In recent years, soil remediation technologies for heavy metal contaminated sites have developed rapidly. New and effective remediation technologies have emerged successively, and more successful practical applications have appeared. Therefore, systematical summarization of the current progress is essential. As a result, in this paper, some mainstream soil remediation technologies for heavy metal contaminated sites, including physical remediation (soil thermal desorption and soil replacement), bioremediation (phytoremediation and microbial remediation), chemical remediation (chemical leaching, chemical stabilization, electrokinetic remediation-permeable reactive barrier, and chemical oxidation/reduction), as well as various combined remediation are comprehensively reviewed. The influencing factors, advantages, disadvantages, remediation mechanism, and practical applications are also deeply discussed. Besides, the corresponding remediation strategies are put forward for the remediation of heavily polluted sites such as the chemical industry, smelting, and tailing areas. Overall, this review will be beneficial for the in-depth understanding and provide references for the reasonable selection and development of soil remediation technology for heavy metal contaminated sites.

Microbial Diversity of Bacteria Involved in Biomineralization Processes in Mine-Impacted Freshwaters

In order to increase the knowledge about geo-bio interactions in extreme metal-polluted mine waters, we combined microbiological, mineralogical, and geochemical analyses to study the indigenous sulfate-reducing bacteria (SRB) involved in the heavy metal (HM) biomineralization processes occurring in Iglesiente and Arburese districts (SW Sardinia, Italy). Anaerobic cultures from sediments of two different mining-affected streams of this regional framework were enriched and analyzed by 16S rRNA next-generation sequencing (NGS) technique, showing sequences closely related to SRB classified in taxa typical of environments with high concentrations of metals (Desulfovibrionaceae, Desulfosporosinus). Nevertheless, the most abundant genera found in our samples did not belong to the traditional SRB groups (i.e., Rahnella, Acinetobacter). The bio-precipitation process mediated by these selected cultures was assessed by anaerobic batch tests performed with polluted river water showing a dramatic (more than 97%) Zn decrease. Scanning electron microscopy (SEM) analysis revealed the occurrence of Zn sulfide with tubular morphology, suggesting a bacteria-mediated bio-precipitation. The inocula represent two distinct communities of microorganisms, each adapted to peculiar environmental conditions. However, both the communities were able to use pollutants in their metabolism and tolerating HMs by detoxification mechanisms. The Zn precipitation mediated by the different enriched cultures suggests that SRB inocula selected in this study have great potentialities for the development of biotechnological techniques to reduce contaminant dispersion and for metal recovery.

Remediation of soil cadmium pollution by biomineralization using microbial-induced precipitation: a review

In recent years, with industrial pollution and the application of agricultural fertilizers with high cadmium (Cd) content, soil Cd pollution has become increasingly serious. A large amount of Cd is discharged into the environment, greatly endangering the stability of the ecological environment and human health. The use of microorganisms to induce Cd precipitation and mineralization is an important bioremediation method. Itis highly efficient, has a low cost, enables environmental protection, and convenient to operate. This article summarizes the pollution status, pollution source, biological toxicity and existing forms of Cd, as well as the biomineralization mechanism of microbial induced Cd(II) precipitation, mainly including microbial-induced carbonate precipitation, microbial-induced phosphate precipitation and microbial-induced sulfide precipitation. Factors affecting the bioremediation of Cd, such as pH, coexisting ions, and temperature, are introduced. Finally, the key points and difficulties of future microbe-induced Cd(II) biomineralization research are highlighted, providing a scientific basis and theoretical guidance for the application of microbe-induced Cd(II) immobilization in soil.

Hydrothermally-altered feldspar as an environmentally-friendly technology to promote heavy metals immobilization: Batch studies and application in smelting-affected soils

Hydrothermally-altered feldspar (HydroPotash, HYP) possesses, among other physicochemical properties, high pH buffering and cation exchange capacity. Therefore, it may potentially remove heavy metals from aqueous solutions and immobilize these metals in contaminated soil. This study aimed to evaluate the capabilities of two types of HydroPotash (HYP-1 and HYP-2) and a zeolite sample (a commercial adsorbent) for immobilizing cadmium (Cd), zinc (Zn), and lead (Pb) from both aqueous solution and contaminated soils from a Zn-smelting area (classified as soil_high, soil_intermediate, and soil_low based on their level of soluble metal concentration). Sorption studies in natural suspension pH showed that HYPs removed 63.8-99.9% Zn, 20.6-40.7% Cd, and 68.4-99.7% Pb from aqueous solution. In the batch test with controlled pH (at pH 5.5), HYPs sorbed more Cd than zeolite. Analyses of scanning electron microscopy-energy dispersive X-ray spectroscopy after desorption showed the presence of Pb at HYP-2, indicating that this metal was effectively adsorbed. In soil_high HYPs immobilized 99.9% of Zn, Cd, and Pb after one week of soil incubation with these products. The HYPs immobilization effect persisted up to 84 days of soil incubation with these products. The increased soil pH promoted by HYPs appears to be the main factor controlling metal sorption. In conclusion, HydroPotash can be used as an adsorbent/amendment to effectively immobilize heavy metals in both water and contaminated soils by precipitation and adsorption. Our findings indicate the high potential of this material for Cd, Zn, and Pb stabilization, which is of great relevance when recovering areas affected by mining/smelting activities with multi-element contamination.

Assembly strategies of the wheat root-associated microbiome in soils contaminated with phenanthrene and copper

Plants can cope with stressful conditions by indirectly regulating root-associated microbial structures. However, the recruitment strategies of the root-associated microbiome in combined organic and inorganic contaminated soils are not well known, especially for common agricultural crops. In this study, we performed greenhouse experiments to investigate the interactive effects of joint copper (Cu) and phenanthrene (PHE) pollution on wheat growth and microbial detoxication processes. Results show that heavy metals did not affect PHE dissipation in the rhizosphere but significantly enhanced the accumulation of PHE in the endosphere. In contrast, the addition of PHE did not influence the absorption of Cu by wheat roots. Cu was the primary factor affecting the variation of microbial communities in cocontaminated treatments among each rhizocompartment while the interactive effects of combined pollutants were only detected in unplanted bulk soil. Microbes are known to degrade polycyclic aromatic hydrocarbons and tolerant heavy metal stress e.g. Novosphingobium, Sphingomonas, Sphingobium and Pseudomonas enriched in the contaminated treatments. Our results provide an integrated understanding of the synthetic effects of combined pollutants on the root-microbial assemblage process in plant-soil systems and offer useful information on the selection of effective bioremediating root-associated microbes for the application of self-remediation by common crops.

Immobilization of cadmium by Burkholderia sp. QY14 through modified microbially induced phosphate precipitation

Microbially induced phosphate precipitation (MIPP) is an advanced bioremediation technology to immobilize heavy metals. An indigenous bacterium QY14 with the function of mineralization isolated from Cd contaminated farmland soil was identified as Burkholderia ambifaria. The minimum inhibitory concentration value for QY14 was 550 mg/L for soluble Cd concentration. This study found that the addition of 10 mM Ca²⁺ during MIPP process could significantly increase the removal ratio of Cd, and the maximum removal ratio of Cd with 10 mM Ca²⁺ and without Ca²⁺ in solution was 99.97% and 76.14%, respectively. The increase of acid phosphatase activity and the formation of precipitate containing calcium caused by 10 mM Ca²⁺ addition contributed the increase of Cd removal efficiency. The results of SEM-EDS, FTIR and XRD showed that Cd was removed by forming Cd containing hydroxyapatite (Cd-HAP). In addition, the dissolution experiment showed the Cd release ratio of Cd-HAP (0.01‰ at initial pH 3.0 of solution) was lower than Cd-absorbed HAP, indicating that Cd was more likely removed by the formation of Ca_10-xCd_x(PO₄)₆(OH)₂ solid solution. Our findings revealed MIPP-based bioremediation supplied with 10 mM Ca²⁺ could increase the Cd removal and could potentially be applied for Cd remediation.

A review on mechanism of biomineralization using microbial-induced precipitation for immobilizing lead ions

Lead (Pb) is a toxic metal originating from natural processes and anthropogenic activities such as coal power plants, mining, waste gas fuel, leather whipping, paint, and battery factories, which has adverse effects on the ecosystem and the health of human beings. Hence, the studies about investigating the remediation of Pb pollution have aroused extensive attention. Microbial remediation has the advantages of lower cost, higher efficiency, and less impact on the environment. This paper represented a review on the mechanism of biomineralization using microbial-induced precipitation for immobilizing Pb(II), including microbial-induced carbonate precipitation (MICP), microbial-induced phosphate precipitation (MIPP), and direct mineralization. The main mechanisms including biosorption, bioaccumulation, complexation, and biomineralization could decrease Pb(II) concentrations and convert exchangeable state into less toxic residual state. We also discuss the factors that govern methods for the bioremediation of Pb such as microbe characteristics, pH, temperature, and humic substances. Based on the above reviews, we provide a scientific basis for the remediation performance of microbial-induced precipitation technique and theoretical guidance for the application of Pb(II) remediation in soils and wastewater.

Individual and combined application of Cu-tolerant Bacillus spp. enhance the Cu phytoextraction efficiency of perennial ryegrass

Forage grasses have recently received a remarkable amount of attention as promising candidates for decontaminating metal-polluted soils, but this strategy is time-consuming and inefficient. The present study aimed to address the beneficial effects of screened plant growth-promoting rhizobacteria (PGPR) strains Bacillus sp. EhS5 and EhS7 on perennial ryegrass and tall fescue. Single or combined inoculation considerably increased the biomass yield and Cu content of inoculated ryegrass compared with uninoculated plants, thereby enhancing the extraction efficiency at different Cu contamination levels. Bioaugmentation did not show a positive impact on the improvement of fescue's phytoextraction efficiency. Principal component analysis (PCA) and Pearson correlation coefficient results identified root development and photosynthesis as the key variables influencing ryegrass biomass. Antioxidant activities and Cu bioavailability are the key variables influencing Cu accumulation. The inoculated ryegrass showed improved photosynthetic status as the photosystem II system efficiency parameters increased and energy dissipation in the form of heat (DI_o/RC) decreased with the help of PGPR. The root length, diameter, surface area, and forks of inoculated ryegrass increased remarkably. The levels of scavengers of reactive oxygen species were enhanced in these plants. Moreover, PGPR significantly increased soil Cu bioavailability by secreting siderophores and organic acid and by increasing soil organic carbon content. Dual inoculation showed better results than individual inoculation in improving ryegrass growth and Cu translocation under high Cu contamination level according to PCA. This study systematically explored the effects and mechanisms of the Bacillus-ryegrass combined remediation and provided a novel method for cleaning Cu-contaminated sites.

Bacterial-induced mineralization (BIM) for soil solidification and heavy metal stabilization: A critical review

Solidification and stabilization (S/S) treatment via cement is common and effective for improving soil strength and stabilizing heavy metals in contaminated soils, but has certain drawbacks, such as high fossil energy consumption, big carbon footprint, poor chemical compatibility, and ambiguous long-term stability. This paper innovatively proposes bacterial-induced mineralization (BIM) as an eco-friendly and efficient S/S method. In the BIM-S/S treatment, life activities of bacteria produce minerals to cement the soil particles and fix the heavy metals. This review firstly summarizes the basic theories of BIM technology followed by the evaluation on remediation effects and long-term stability in terms of soil solidification and heavy metal stabilization. Then the factors in BIM-S/S application are reviewed. Emphasis is put on the comparison of the BIM-S/S effect with that of cement-based-S/S technology. It is concluded that BIM-S/S technology is promising with outstanding performance in sustainability. On the other hand, current limitations and deficiencies with this technology are identified finally, hereby the directions for future research are pointed to make a major advancement in the BIM-S/S technology.

Hazardous wastes treatment technologies

A review of the literature published in 2019 on topics related to hazardous waste management in water, soils, sediments, and air. The review covered treatment technologies applying physical, chemical, and biological principles for the remediation of contaminated water, soils, sediments, and air. PRACTICAL POINTS: This report provides a review of technologies for the management of waters, wastewaters, air, sediments, and soils contaminated by various hazardous chemicals including inorganic (e.g., oxyanions, salts, and heavy metals), organic (e.g., halogenated, pharmaceuticals and personal care products, pesticides, and persistent organic chemicals) in three scientific areas of physical, chemical, and biological methods. Physical methods for the management of hazardous wastes including general adsorption, sand filtration, coagulation/flocculation, electrodialysis, electrokinetics, electro-sorption ( capacitive deionization, CDI), membrane (RO, NF, MF), photocatalysis, photoelectrochemical oxidation, sonochemical, non-thermal plasma, supercritical fluid, electrochemical oxidation, and electrochemical reduction processes were reviewed. Chemical methods including ozone-based, hydrogen peroxide-based, potassium permanganate processes, and Fenton and Fenton-like process were reviewed. Biological methods such as aerobic, anoxic, anaerobic, bioreactors, constructed wetlands, soil bioremediation and biofilter processes for the management of hazardous wastes, in mode of consortium and pure culture were reviewed. Case histories were reviewed in four areas including contaminated sediments, contaminated soils, mixed industrial solid wastes and radioactive wastes.

A psychrotolerant Ni-resistant Bacillus cereus D2 induces carbonate precipitation of nickel at low temperature

Psychrotolerant bacteria play a particularly important role in the remediation of heavy metal in contamination sites at low temperatures. In the current study, a psychrotolerant Ni-resistant bacterial strain, identified as Bacillus cereus D2, was isolated from a nickel mining area in China. The isolated strain could produce a large amount of urease enzyme (194.6 U/mL), grow well in harsh environmental conditions at a temperature of 10 °C, and at a Ni (II) concentration up to 400 mg/L. Also, under the low temperature (10 °C), this strain has been revealed to induce carbonate precipitation (Ni₂CO₃(OH)₂·H₂O) through biomineralization for removing the high efficiency of Ni ions (73.47%) from the culture solution. Furthermore, strain D2 could immobilize the DTPA-Ni in contaminated soil under the case of the laboratory condition at 10 °C. These data support that the psychrotolerant bacterial strain D2 may play an important role in remediation technology by eliminating Ni ions from the contaminated soil at low temperatures.

The shuttling effects and associated mechanisms of different types of iron oxide nanoparticles for Cu(II) reduction by Geobacter sulfurreducens

Iron oxide nanoparticles (IONPs), commonly occurring in soils, aquifers and subsurface sediments, may serve as important electron shuttles for the biotransformation of coexisting toxic metals. Here, we explored the impact of different IONPs (low-crystallinity goethite and ferrihydrite, high-crystallinity magnetite and hematite) on the reduction of Cu(II) by Geobacter sulfurreducens and the associated electron shuttle mechanisms. All four IONPs tested can function as electron shuttles to enhance long distance electron transfer from bacteria to Cu(II). Upon IONPs addition, the rate of Cu(II) reduction increased from 14.9 to 65.0-83.8 % in solution after 7 days of incubation. Formation of both Cu(I) and Cu(0) on the iron oxide nanoparticles was revealed by the X-ray absorption near-edge spectroscopy. The IONPs can be utilized as conduits by bacteria to directly transfer electrons and they can also reversibly accept and donate electrons as batteries through a charging-discharging cycle to transfer electron. The latter mechanism (geo-battery) played an important role in all four types of IONPs while the former one (geo-conductor) can only be found in the magnetite and hematite treatments due to the higher crystallinity. Our results shed new light on the biogeochemically mediated electron flux in microbe-IONPs-metal networks under anaerobic iron-reduction conditions.

Extracellular polymeric substance from Rahnella sp. LRP3 converts available Cu into Cu5(PO4)2(OH)4 in soil through biomineralization process

Soil contamination by toxic heavy metals such as copper is a serious problem. In this study, the extracellular polymeric substance (EPS) extracted from Rahnella sp. LRP3 was found with the potential of immobilizing Cu-polluted in soil. The EPS could bond to Cu (II) through functional groups (polysaccharides, amide, proteins, and carboxyl groups), which further developed into the porous sphere with a diameter of 20 μm. Besides, EPS could induce the formation of Cu₅(PO₄)₂(OH)₄ crystal by the biomineralization process. Finally, the EPS in the culture solution reduced 89.4 mg/kg of DTPA-Cu content by 78.99% in soil for 10 d under the condition of 25 °C via biomineralization. The results demonstrated that EPS produced by Rahnella sp. LRP3 will be a promising factor in the remediation of Cu contaminated soil.

The utilization of biomineralization technique based on microbial induced phosphate precipitation in remediation of potentially toxic ions contaminated soil: A mini review

In recent years, many studies have been devoted to investigate the application of microbial induced phosphate precipitation (MIPP) process for potentially toxic element polluted soil remediation. MIPP biomineralization technique exhibits a great potential to efficiently remediate polluted soil considering its low cost, green and ecofriendly process, and simple in operation. This paper represented a review on the state of the art of polluted soil remediation based on MIPP technique. Briefly, certain defined criteria on targeted microbe selection was discussed; an overall review on the utilization of MIPP process for toxic ions biomineralization in soil was provided; influencing factors reported in the literature, such as pH, temperature, humic substances, coexisting ions, effective microbial population, and enzyme activity, were then comprehensively reviewed; finally; a special emphasis was given to enhance MIPP remediation performance in soil in future research.

The role of highly silicious rocks in increasing productivity and obtaining ecologically-safe agricultural products

The paper presents results of long-term research on effectiveness of application of highly-siliceous rocks (diatomite and zeolite) in crop cultivation technology in the conditions of leached black soil of the Middle Volga region. Crop yields and content of heavy metals (Zn, Cu, Pb, Cd, Ni) in products are given in two variants: control and variant with introduction of the highly-siliceous rocks into the soil. It has been established that diatomite from Inza deposit and zeolite from Yushanskiy deposit of Ulyanovsk region are highly effective non-traditional fertilizers due to a complex positive effect on the "soil-plant" system. Thus, the yield increase of sugar beet roots amounted to 6.4 t/ha (+23 %) when diatomite was introduced into the soil at the dose of 5 t/ha, barley – 0.93 t/ha (+52 %), spring wheat – 0, 67 t/ha (+42 %). Highly-siliceous rocks with a highly developed specific surface area, possessing unique physicochemical properties, contribute to production of ecologically safe products. At the same time, the intake of heavy metals in agricultural products for some crops and metals decreased by more than 2 times.