Synergistic leaching of heavy metal-polycyclic aromatic hydrocarbon in co-contaminated soil by hydroxamate siderophore: Role of cation-π and chelation

Carbonate composite materials for the leaching remediation of uranium-contaminated soils: Mechanistic insights and engineering applications

In this study, a composite leaching agent consisting of Na2CO3, NaHCO3, H2O2, and deep eutectic solvents was synthesized, and its composition and application conditions were optimized to mitigate soil contamination resulting from uranium mining. Laboratory and pilot field tests revealed that the use of this agent facilitated up to 92.6 % removal of uranium from contaminated soils. Analytical characterization through X-ray diffraction (XRD), Fourier transform infrared (FTIR) spectroscopy, and X-ray photoelectron spectroscopy (XPS) revealed that CO32- readily formed complexes with uranium, increasing its mobility and desorption from soil particles. The safety of the leaching process was confirmed through plant growth tests and enzyme activity assays. Moreover, the leaching strategy not only adheres to environmentally sustainable principles but also replenishes carbon and nitrogen in the soil, thereby aiding in the restoration of its functional use.

Effects of naturally aged microplastics on arsenic and cadmium accumulation in lettuce: Insights into rhizosphere microecology

Naturally aged microplastics (NAMPs) are commonly found in farmland soils contaminated with heavy metals (HMs), such as arsenic (As) and cadmium (Cd); yet their combined effects on soil-plant ecosystems remain poorly understood. In this study, we investigated the toxic effects of NAMPs and As-Cd on lettuce, considering the influence of earthworm activity, and examined changes in As-Cd bioavailability in the rhizosphere. Four experimental systems were established: soil-only, soil-lettuce, soil-earthworms, and soil-lettuce-earthworms systems, with four NAMPs concentrations (0, 0.1, 0.5, 1 %). Our results showed that exposure to 0.1 % NAMPs reduced As accumulation in lettuce shoots (0.17-0.25 mg kg-1) and roots (1.13-1.72 mg kg-1), while increasing biomass and enhancing root growth by alleviating toxicity. In contrast, the combined stress of higher NAMPs concentration (0.5 %/1 %) and As-Cd caused a 28.4-58.4 % reduction in root activity, which stimulated low-molecular-weight organic acid (LMWOA) secretion in the rhizosphere, increasing the bioavailability of As and Cd and enhancing their absorption by lettuce. Partial least squares path modeling (PLS-PM) revealed that co-exposure altered LMWOA content, soil enzyme activity, and microbial community stability in the rhizosphere, ultimately influencing the bioavailability and uptake of As and Cd by lettuce.

Co-toxicity and co-contamination remediation of polycyclic aromatic hydrocarbons and heavy metals: Research progress and future perspectives

The combined pollution of polycyclic aromatic hydrocarbons (PAHs) and heavy metals (HMs) has attracted wide attention due to their high toxicity, mutagenicity, carcinogenicity and teratogenicity. A thorough understanding of the progress of the relevant studies about their co-toxicity and co-contamination remediation is of great importance to prevent environmental risk and develop new efficient remediation methods. This paper summarized the factors resulting in different co-toxic effects, the interaction mechanism influencing co-toxicity and the development of remediation technologies for the co-contamination. Also, the inadequacies of the previous studies related to the co-toxic effect and the remediation methods were pointed out, while the corresponding solutions were proposed. The specific type and concentration of PAHs and HMs, the specific type of their action object and environmental factors could affect their co-toxicity by influencing each other's transmembrane process, detoxification process and increasing reactive oxygen species (ROS) and some other mechanisms that need to be further studied. The specific action mechanisms of the concentration, environmental factors and the specific type of PAHs and HMs, their effect on each other's transmembrane processes, investigations at the cellular and molecular levels, non-targeted metabolomics analysis, as well as long-term ecological effects were proposed to be further explored in order to obtain more information about the co-toxicity. The combination of two or more methods, especially combining bioremediation with other methods, is a potential development field for the remediation of co-contamination. It can make full use of the advantages of each remediation method, to achieve an increase of remediation efficiency and a decrease of both remediation cost and ecological risk. This review intends to further improve the understanding on co-toxicity and provide references for the development and innovation of remediation technologies for the co-contamination of PAHs and HMs.

Stabilization of sulfidated nano zerovalent iron with biochar: Enhanced transport and application for hexavalent chromium removal from water

Nano zerovalent iron (nZVI) has been broadly used in the treatment of chromium (Cr) pollution. However, conventional nZVI particles are prone to surface oxidation and particle agglomeration, limiting their effectiveness in contaminant removal. To address these issues, sulfidated nZVI (S-nZVI) was synthesized on the corn stover biochar (BC) surface for rapid removal of Cr(VI) from water. Sedimentation and column transport experiments demonstrated that S-nZVI@BC exhibits excellent dispersion and transport properties, efficiently removing Cr(VI) in the pH range of 2.5-5.0 and showing minimal impact from dissolved oxygen. The Fe0, Fe(Ⅱ), and S2- components of the material, along with the leached Fe2+ ions, contributed to the Cr(VI) removal. A portion of the removed Cr(VI) was reduced to Cr(III) in solution, while another portion was adsorbed on the material's surface through precipitation, with 42.0% of Cr being adsorbed within 30 min. Cycling and water matrix interference experiments further demonstrated the material's excellent reusability and resistance to interference. Notably, the continuous Cr(VI) removal capability in column experiments and the reactivation potential of S-nZVI@BC highlight its promise for practical applications. Future studies are suggested to explore the ecotoxicological effects of the S-nZVI@BC and its capacity for the simultaneous removal of multiple contaminants.

Hydroxamate Siderophores Intensify the Co-Deposition of Cadmium and Silicon as Phytolith-Like Particulates in Rice Stem Nodes: A Natural Strategy to Mitigate Grain Cadmium Accumulation

Sequestration of cadmium (Cd) in rice phytolith can effectively restrict its migration to the grains, but how hydroxamate siderophore (HDS) affects phytolith formation within rice plants especially the fate of Cd and silicon (Si) remains poorly understood. Here, we found that the addition of HDS increased the content of dissolved Si and Cd in soil pore water as well as its absorption by the rice roots during the reproductive growth stage. HDS effectively trapped orthosilicic acid and Cd ions at the third stem nodes of rice plants via hydrogen bonds and chelation interactions, which then rapidly deposited on the xylem cell wall through hydrophobic interactions. Ultimately, Cd was immobilized as phytolith-like particulates in the form of CdSiO3. Field experiments verified that Cd accumulation was significantly reduced by 46.4% in rice grains but increased by 41.2% in rice stems after HDS addition. Overall, this study advances our understanding of microbial metabolites enhancing the instinctive physiological barriers within rice plants.

Stenotrophomonas pavanii MY01 induces phosphate precipitation of Cu(II) and Zn(II) by degrading glyphosate: performance, pathway and possible genes involved

Microbial bioremediation is an advanced technique for removing herbicides and heavy metals from agricultural soil. In this study, the strain Stenotrophomonas pavanii MY01 was used for its ability to degrade glyphosate, a phosphorus-containing organic compound, producing PO4 3- as a byproduct. PO4 3- is known to form stable precipitates with heavy metals, indicating that strain MY01 could potentially remove heavy metals by degrading glyphosate. Therefore, the present experiment induced phosphate precipitation from Cu(II) (Hereinafter referred to as Cu2+) and Zn(II) (Hereinafter referred to as Zn2+) by degrading glyphosate with strain MY01. Meanwhile, the whole genome of strain MY01 was mined for its glyphosate degradation mechanism and its heavy metal removal mechanism. The results of the study showed that the strain degraded glyphosate best at 34°C, pH = 7.7, and an inoculum of 0.7%, reaching 72.98% within 3d. The highest removal of Cu2+ and Zn2+ in the test was 75.95 and 68.54%, respectively. A comparison of strain MY01's genome with glyphosate degradation genes showed that protein sequences GE000474 and GE002603 had strong similarity to glyphosate oxidoreductase and C-P lyase. This suggests that these sequences may be key to the strain's ability to degrade glyphosate. The GE001435 sequence appears to be related to the phosphate pathway, which could enable phosphate excretion into the environment, where it forms stable coordination complexes with heavy metals.

Co-occurrence of polycyclic aromatic hydrocarbons and heavy metals in various environmental matrices of a chronic petroleum polluted region in Iran; Pollution characterization, and assessment of ecological and human health risks

Oil spills from pipeline accidents can result in long-lasting health effect in the people living in a ‎polluted region‎. In this study, the level of the 16 US EPA priority polycyclic aromatic hydrocarbons (PAHs‎) and heavy metals (HMs) have been ‎analyzed in environmental matrices of a region with frequent oil ‎pipeline accidents in Iran‎.‎ The results showed that the mean ‎concentration of ΣPAHs and ΣHMs decreased from the upstream to the downstream and also the levels were ‎higher in the wet season than those in the dry season. The average concentration of HMs in sediments was higher than that in other ‎environments. The 3-ring and 4-ring PAHs were dominant in all of the studied matrices with the average values of 32.61 % and 45.85 %, respectively. The ecological risks of PAHs and HMs were medium and high in all matrices, respectively. In wet season, the total cancer risk (TCR) related to PAHs in agricultural soil was greater than 10-4, whereas it's very close to the threshold for HMs in water. This study offers a reference for assessing the long-term impact of oil spills in contaminated environmental matrices. The results are crucial for developing effective strategies to mitigate oil pollution ‎impacts and protect environmental and public health.

Do the residual metals in multiple environmental media surrounding mines pose ecological and health risks? A case of an abandoned mining area in central south China

Despite effective mining environmental regulations, residual metal pollution persists, leading to significant ecological harm and posing substantial risks to human well-being. This study employed multiple-criteria methods to investigate the ecological and health risks caused by metals in multiple environmental media (e.g., arable soil, indoor dust, PM10, homegrown vegetables, and rice) around abandoned mine areas (MA) in central south China. The study also aimed to identify predominant risk factors and the main exposure pathway. The findings revealed that metal levels and risks in the environmental media surrounding the MA were significantly higher than those in the control areas (away from abandoned mines, CA). This indicates that the accumulation of metals in the environmental media surrounding the MA was attributed to the previous mining activities. Variations in metal content were observed among different environmental media in MA, with Cd from mining source being the primary pollutant in arable soil, indoor dust, PM10, and vegetables, while As from agricultural source was the main pollutant in rice. Additionally, the consumption of Cd-contaminated vegetables and As-contaminated rice emerged as the primary routes of health hazards for the local population, leading to significant non-carcinogenic and carcinogenic risks. Consequently, it is imperative for the government and mining companies to promptly establish risk control and remedial strategies for mitigating residual metal levels in multiple environmental media surrounding the MA.

In-situ enrichment of ARGs and their carriers in soil by hydroxamate siderophore: A promising biocontrol approach for source reduction

Pathogenic microorganisms with antibiotic resistance genes (ARGs) pose a serious threat to public health and soil ecology. Although new drugs and available antibacterial materials can kill ARG carriers but accidentally kill beneficial microorganisms. Therefore, the rapid enrichment and separation of ARGs and their carriers from soil is becoming an important strategy for controlling the diffusion of ARGs. Hydroxamate siderophore (HDS) has gained widespread attentions for its involvement in trace element transfer among microorganisms in the soil environment, we thus explored an in-situ trapping-enrichment method for ARGs and their carriers via a small molecular HDS secreted by Pseudomonas fluorescens HMP01. In this study, we demonstrate that HDS significantly in-situ traps and enriches certain ARGs, including chloramphenicol, MLS, rifamycin, and tetracycline resistance genes in the soil environment. The enrichment efficiencies were 1473-fold, 38-fold, 17-fold, and 5-fold, respectively, higher than those in the control group. Specifically, the primary enriched ARGs were rpoB, mphL, catB2, and tetA(60), and Bacillus, Rhizobium, Rossellomorea, and Agrobacterium were hosts for these ARGs. This enrichment was caused by the upregulation of chemotaxis genes (e.g., cheW, cheC, and cheD) and rapid biofilm formation within the enriched bacterial population. Notably, representative ARGs such as cat, macB, and rpoB were significantly reduced by 36%, 85.7%, and 72%, respectively, in the paddy soil after HDS enrichment. Our research sheds light on the potential application of siderophore as a rapping agent for the eco-friendly reduction of ARGs and their carriers in soil environments.

Siderophores and metallophores: Metal complexation weapons to fight environmental pollution

Siderophores are small molecules of organic nature, released by bacteria to chelate iron from the surrounding environment and subsequently incorporate it into the cytoplasm. In addition to iron, these secondary metabolites can complex with a wide variety of metals, which is why they are commonly studied in the environment. Heavy metals can be very toxic when present in large amounts on the planet, affecting public health and all living organisms. The pollution caused by these toxic metals is increasing, and therefore it is urgent to find practical, sustainable, and economical solutions for remediation. One of the strategies is siderophore-assisted bioremediation, an innovative and advantageous alternative for various environmental applications. This research highlights the various uses of siderophores and metallophores in the environment, underscoring their significance to ecosystems. The study delves into the utilization of siderophores and metallophores in both marine and terrestrial settings (e.g. bioremediation, biocontrol of pathogens, and plant growth promotion), such as bioremediation, biocontrol of pathogens, and plant growth promotion, providing context for the different instances outlined in the existing literature and highlighting their relevance in each field. The study delves into the structures and types of siderophores focusing on their singular characteristics for each application and methodologies used. Focusing on recent developments over the last two decades, the opportunities and challenges associated with siderophores and metallophores applications in the environment were mapped to arm researchers in the fight against environmental pollution.

Reducing the accumulation of cadmium and phenanthrene in rice by optimizing planting spacing: Role of low-abundance but core rhizobacterial communities

Optimizing planting spacing is a common agricultural practice for enhancing rice growth. However, its effect on the accumulation of cadmium (Cd) and phenanthrene (Phen) in soil-rice systems and the response mechanisms of rhizobacteria to co-contaminants remain unclear. This study found that reducing rice planting spacing to 5 cm and 10 cm significantly decreased the bioavailability of Cd (by 7.9 %-29.5 %) and Phen (by 12.9 %-47.6 %) in the rhizosphere soil by converting them into insoluble forms. The increased accumulation of Cd and Phen in roots and iron plaques (IPs) ultimately led to decreased Cd (by 32.2 %-39.9 %) and Phen (by 4.2 %-17.3 %) levels in brown rice, and also significantly affected the composition of rhizobacteria. Specifically, reducing rice planting spacing increased the abundance of low-abundance but core rhizobacteria in the rhizosphere soil and IPs, including Bacillus, Clostridium, Sphingomonas, Paenibacillus, and Leifsonia. These low-abundance but core rhizobacteria exhibited enhanced metabolic capacities for Cd and Phen, accompanied by increased abundances of Cd-resistance genes (e.g., czcC and czcB) and Phen-degradation genes (e.g., pahE4 and pahE1) within the rhizosphere soil and IPs. Reduced planting spacing had no noticeable impact on rice biomass. These findings provide new insights into the role of low-abundance but core rhizobacterial communities in Cd and Phen uptake by rice, highlighting the potential of reduced planting spacing as an eco-friendly strategy for ensuring the safety of rice production on contaminated paddy soils.

The role of microbial partners in heavy metal metabolism in plants: a review

Heavy metal pollution threatens plant growth and development as well as ecological stability. Here, we synthesize current research on the interplay between plants and their microbial symbionts under heavy metal stress, highlighting the mechanisms employed by microbes to enhance plant tolerance and resilience. Several key strategies such as bioavailability alteration, chelation, detoxification, induced systemic tolerance, horizontal gene transfer, and methylation and demethylation, are examined, alongside the genetic and molecular basis governing these plant-microbe interactions. However, the complexity of plant-microbe interactions, coupled with our limited understanding of the associated mechanisms, presents challenges in their practical application. Thus, this review underscores the necessity of a more detailed understanding of how plants and microbes interact and the importance of using a combined approach from different scientific fields to maximize the benefits of these microbial processes. By advancing our knowledge of plant-microbe synergies in the metabolism of heavy metals, we can develop more effective bioremediation strategies to combat the contamination of soil by heavy metals.

Responses of a polycyclic aromatic hydrocarbon-degrading bacterium, Paraburkholderia fungorum JT-M8, to Cd (II) under P-limited oligotrophic conditions

For the bioremediation of mixed-contamination sites, studies on polycyclic aromatic hydrocarbon (PAH) degradation or Cd (II) tolerance in bacteria are commonly implemented in nutrient-rich media. In contrast, in the field, inocula usually encounter harsh oligotrophic habitats. In this study, the environmental strain Paraburkholderia fungorum JT-M8 was used to explore the overlooked Cd (II) defense mechanism during PAH dissipation under P-limited oligotrophic condition. The results showed that the growth and PAH degradation ability of JT-M8 under Cd (II) stress were correlated with phosphate contents and exhibited self-regulating properties. Phosphates mainly affected the Cd (II) content in solution, while the cellular distribution of Cd (II) depended on Cd (II) levels; Cd (II) was mainly located in the cytoplasm when exposed to less Cd (II), and vice versa. The unique Cd (II) detoxification pathways could be classified into three aspects: (i) Cd (II) ionic equilibrium and dose-response effects regulated by environmental matrices (phosphate contents); (ii) bacterial physiological self-regulation, e.g., cell surface-binding, protein secretion and active transport systems; and (iii) specific adaptive responses (flagellum aggregation). This study emphasizes the importance of considering culture conditions when assessing the metal tolerance and provides new insight into the bacterial detoxification process of complex PAH-Cd (II) pollutants.

Screening of heavy metal-resistant rhizobial and non-rhizobial microflora isolated from Trifolium sp. growing in mining areas

Plant growth-promoting rhizobacteria (PGPR) can promote plant growth and development with several beneficial effects, especially in challenging environmental conditions, such as the presence of toxic contaminants. In this study, 49 isolates obtained from Trifolium sp. nodules growing on a Pb/Zn mine site were characterized for PGP traits including siderophores production, phosphate solubilization, extracellular enzymes production, and antifungal activity. The isolates were also screened for their ability to grow at increasing concentrations of NaCl and heavy metals, including lead, zinc, cobalt, copper, nickel, cadmium, and chromium. The findings of our study indicated that isolates Cupriavidus paucula RSCup01-RSCup08, Providencia rettgeri RSPro01, Pseudomonas putida RSPs01, Pseudomonas thivervalensis RSPs03-RSPs09, and Acinetobacter beijerinckii RSAci01 showed several key traits crucial for promoting plant growth, thus demonstrating the greatest potential. Most isolates displayed resistance to salt and heavy metals. Notably, Staphylococcus xylosus RSSta01, Pseudomonas sp. RSPs02, Micrococcus yunnanensis RSMicc01, and Kocuria dechangensis RSKoc01 demonstrated a significant capacity to grow at salt concentrations ranging from 10 to 20%, and isolates including Cupravidus paucula RSCup01-RSCup08 exhibited resistance to high levels of heavy metals, up to 1300 mg/L Pb++, 1200 mg/L Zn++, 1000 mg/L Ni++, 1000 mg/L Cd++, 500 mg/L Cu++, 400 mg/L Co++, and 50 mg/L CrVI+. Additionally, the analysis revealed that metal-resistant genes pbrA, czcD, and nccA were exclusively detected in the Cupriavidus paucula RSCup01 strain. The results of this study provide insights into the potential of plant growth-promoting rhizobacteria strains that might be used as inoculants to improve phytoremediation in heavy metal-contaminated soils.

Application of bacterial agent YH for remediation of pyrene-heavy metal co-pollution system: Efficiency, mechanism, and microbial response

The combination of organic and heavy metal pollutants can be effectively and sustainably remediated using bioremediation, which is acknowledged as an environmentally friendly and economical approach. In this study, bacterial agent YH was used as the research object to explore its potential and mechanism for bioremediation of pyrene-heavy metal co-contaminated system. Under the optimal conditions (pH 7.0, temperature 35°C), it was observed that pyrene (PYR), Pb(II), and Cu(II) were effectively eliminated in liquid medium, with removal rates of 43.46%, 97.73% and 81.60%, respectively. The microscopic characterization (SEM/TEM-EDS, XPS, XRD and FTIR) results showed that Pb(II) and Cu(II) were eliminated by extracellular adsorption and intracellular accumulation of YH. Furthermore, the presence of resistance gene clusters (cop, pco, cus and pbr) plays an important role in the detoxification of Pb(II) and Cu(II) by strains YH. The degradation rate of PYR reached 72.51% in composite contaminated soil, which was 4.33 times that of the control group, suggesting that YH promoted the dissipation of pyrene. Simultaneously, the content of Cu, Pb and Cr in the form of F4 (residual state) increased by 25.17%, 6.34% and 36.88%, respectively, indicating a decrease in the bioavailability of heavy metals. Furthermore, YH reorganized the microbial community structure and enriched the abundance of hydrocarbon degradation pathways and enzyme-related functions. This study would provide an effective microbial agent and new insights for the remediation of soil and water contaminated with organic pollutants and heavy metals.

Metagenomic and proteomic insights into the self-adaptive cell surface hydrophobicity of Sphingomonas sp. strain PAH02 reducing the migration of cadmium-phenanthrene co-pollutant in rice

Cell surface hydrophobicity (CSH) dominates the interactions between rhizobacteria and pollutants at the soil-water interface, which is critical for understanding the dissipation of pollutants in the rhizosphere microzone of rice. Herein, we explored the effects of self-adaptive CSH of Sphingomonas sp. strain PAH02 on the translocation and biotransformation behaviour of cadmium-phenanthrene (Cd-Phe) co-pollutant in rice and rhizosphere microbiome. We evidenced that strain PAH02 reduced the adsorption of Cd-Phe co-pollutant on the rice root surface while enhancing the degradation of Phe and adsorption of Cd via its self-adaptive CSH in the hydroponic experiment. The significant upregulation of key protein expression levels such as MerR, ARHDs and enoyl-CoA hydratase/isomerase, ensures self-adaptive CSH to cope with the stress of Cd-Phe co-pollutant. Consistently, the bioaugmentation of strain PAH02 promoted the formation of core microbiota in the rhizosphere soil of rice (Oryza sativa L.), such as Bradyrhizobium and Streptomyces and induced gene enrichment of CusA and PobA that are strongly associated with pollutant transformation. Consequently, the contents of Cd and Phe in rice grains at maturity decreased by 17.2% ± 0.2% and 65.7% ± 0.3%, respectively, after the bioaugmentation of strain PAH02. These findings present new opportunities for the implementation of rhizosphere bioremediation strategies of co-contaminants in paddy fields.

Fertilization of Microbial Composts: A Technology for Improving Stress Resilience in Plants

Microbial compost plays a crucial role in improving soil health, soil fertility, and plant biomass. These biofertilizers, based on microorganisms, offer numerous benefits such as enhanced nutrient acquisition (N, P, and K), production of hydrogen cyanide (HCN), and control of pathogens through induced systematic resistance. Additionally, they promote the production of phytohormones, siderophore, vitamins, protective enzymes, and antibiotics, further contributing to soil sustainability and optimal agricultural productivity. The escalating generation of organic waste from farm operations poses significant threats to the environment and soil fertility. Simultaneously, the excessive utilization of chemical fertilizers to achieve high crop yields results in detrimental impacts on soil structure and fertility. To address these challenges, a sustainable agriculture system that ensures enhanced soil fertility and minimal ecological impact is imperative. Microbial composts, developed by incorporating characterized plant-growth-promoting bacteria or fungal strains into compost derived from agricultural waste, offer a promising solution. These biofertilizers, with selected microbial strains capable of thriving in compost, offer an eco-friendly, cost-effective, and sustainable alternative for agricultural practices. In this review article, we explore the potential of microbial composts as a viable strategy for improving plant growth and environmental safety. By harnessing the benefits of microorganisms in compost, we can pave the way for sustainable agriculture and foster a healthier relationship between soil, plants, and the environment.

Co-transformation of HMs-PAHs in rhizosphere soils and adaptive responses of rhizobacteria during whole growth period of rice (Oryza sativa L.)

This study investigated the transformations of heavy metals (HMs) and polycyclic aromatic hydrocarbons (PAHs) in rhizosphere soils and adaptive responses of rhizobacterial community under the real field conditions during four growth stages (e.g., greening, tillering, heading, and maturity) of early rice (Zhongjiazao 17) and late rice (Zhongyou 9918) in Jiangshe village (JSV) and Yangji village (YJV). Results showed that rhizosphere soils of YJV were mildly polluted by Cd and PAHs compared to that of JSV. The relative abundance of bioavailable Cd (bio-Cd) and bioavailable As (bio-As) in rhizosphere soil increased before the heading stage but decreased at the subsequent growth stage, but the content of ΣPAHs in rhizosphere soil decreased gradually during whole growth period. The dominant rhizobacteria genera at YJV (e.g., Bacillus, Massilia, Sphingomonas, and Geobacter) increased at an abundance level from the tillering to heading stage. Rhizobacteria interacted with the above co-pollutant more intensely at the tillering and heading stage, where genes involved in HM-resistance and PAH-degradation appeared to have a significant enhancement. The contents of bio-Cd and bio-As in rhizosphere soil of early rice were higher than that of late rice at each growth stage, especially at the heading stage. Bio-Cd, ΣPAHs, and organic matter were key factors influencing the community structure of rhizobacteria. Results of this study provide valuable insights about the interactions between HM-PAH co-pollutant and rhizobacterial community under real field conditions and thus develop in-situ rhizosphere remediation techniques for contaminated paddy fields.

The Amphiphilic Property and Structure of β-Amyloid Peptide Contribute to Its Impacts on the Activities of Horseradish Peroxidase and Alkaline Phosphatase

Recent studies have found that β-amyloid (Aβ) oligomers may play much more important roles than amyloid plaques in the pathogenesis of Alzheimer's disease (AD). However, due to the complexity of Aβ, studying the structural basis of Aβ oligomer toxicity is challenging. Here, we assessed the amphiphilic property and β-hairpin structure of Aβ monomer. The potential impacts of Aβ oligomers and three sequence-modifying peptides on the enzyme activities of horseradish peroxidase (HRP) and alkaline phosphatase (ALP) were further evaluated. We demonstrated that Aβ oligomer possesses the ability to alter the activity of two enzymes. Moreover, modifications on the hydrophobic region and β-turn structure of Aβ monomer significantly alter its impacts on the enzyme activities. In addition, these modifications also change the bonding modes of Aβ monomers or oligomers binding to HRP, as assessed by molecular docking. All of these findings provide direct experimental evidence to reveal the critical roles of the amphiphilic property and β-sheet structure of Aβ monomer in its impacts on protein activity.

Isolation of cadmium-resistance and siderophore-producing endophytic bacteria and their potential use for soil cadmium remediation

Endophyte-assisted phytoremediation is an emerging technique for soil heavy metals (HMs) remediation and has become a research focus in the world because of the benefits of endophytes on plant growth and uptake of HMs. In this study, multifunctional endophytic bacteria strains were isolated and screened, and the feasibility of these strains for soil cadmium (Cd) remediation was investigated by soil incubation experiments and pot experiments. All endophytic bacteria were isolated from the roots of woody plants grown on Cd-contaminated soil. Seven endophytic bacteria strains had capacities to tolerate Cd toxicity and produce siderophores, and sequence analysis of the 16S rRNA gene classified these strains as belonging to the genera Burkholderia, Pseudomonas, Pantoea, and Herbaspirillum. All strains were able to produce hydroxamate siderophores (32.40%-91.49%) and had three or more plant growth promoting properties such as phosphorus solubilization, nitrogen fixation, indole acetic acid and 1-aminocyclopropane-1-carboxylate deaminase production. They were all strongly resistant to Cd2+ toxicity, with the minimum inhibitory concentration in LB medium ranging from 1.5 mM to 9.0 mM. Except for strain Burkholderia contaminans JLS17, other strains showed decreasing removal rates within continuously elevated Cd2+ concentration of 10-100 mg L-1. Compared with the uninoculated treatment, the inoculation of strains B.contaminans JLS17, Pseudomonas lurida JLS32, and Pantoea endophytica JLS50 effectively increased the concentration of acid-soluble Cd and decreased the concentration of reducible, oxidizable, and residual Cd in the soils of different Cd contamination levels. In pot experiments, inoculation of strains JLS17 and YTG72 significantly (p < 0.05) promoted the growth of above-ground parts and root system of slash pine (Pinus elliottii) under Cd stress. This study provides a valuable biological resource for endophyte-assisted phytoremediation and a theoretical basis for the application of endophytic bacteria for remediation of Cd-contaminated soil.

Effect of Soil Washing with an Amino-Acid-Derived Ionic Liquid on the Properties of Cd-Contaminated Paddy Soil

To reduce contamination levels in Cd-contaminated paddy soil while retaining soil characteristics, we have studied the Cd-removing ability of 15 different amino acid-based ionic liquids, which are considered to be green solvents, as soil washing agents and their impact on soil. The results indicated that the glycine hydrochloride ([Gly][Cl]) removed the most Cd, and under optimized conditions could remove 82.2% of the total Cd. Encouragingly, the morphology of the soil had not been significantly changed by the washing process. After the soil was rinsed twice with water and the pH was adjusted to 6.2 by adding Ca(OH)₂, the germination index of the rice increased by 7.5%. The growth of the rice was also stimulated, with lengths and weights of the rice plants increasing by 56% and 32%, respectively, after two weeks. These experiments demonstrate that amino-acid-derived ionic liquids can be promising soil-washing agents of Cd-contaminated paddy soil.

Pros and Cons of Biochar to Soil Potentially Toxic Element Mobilization and Phytoavailability: Environmental Implications

While the potential of biochar (BC) to immobilize potentially toxic elements (PTEs) in contaminated soils has been studied and reviewed, no review has focused on the potential use of BC for enhancing the phytoremediation efficacy of PTE-contaminated soils. Consequently, the overarching purpose in this study is to critically review the effects of BC on the mobilization, phytoextraction, phytostabilization, and bioremediation of PTEs in contaminated soils. Potential mechanisms of the interactions between BC and PTEs in soils are also reviewed in detail. We discuss the promises and challenges of various approaches, including potential environmental implications, of BC application to PTE-contaminated soils. The properties of BC (e.g., surface functional groups, mineral content, ionic content, and π-electrons) govern its impact on the (im)mobilization of PTEs, which is complex and highly element-specific. This review demonstrates the contrary effects of BC on PTE mobilization and highlights possible opportunities for using BC as a mobilizing agent for enhancing phytoremediation of PTEs-contaminated soils.

A review on the bioleaching of toxic metal(loid)s from contaminated soil: Insight into the mechanism of action and the role of influencing factors

The anthropogenic activities in agriculture, industrialization, mining, and metallurgy combined with the natural weathering of rocks, have led to severe contamination of soils by toxic metal(loid)s. In an attempt to remediate these polluted sites, a plethora of conventional approaches such as Solidification/Stabilization (S/S), soil washing, electrokinetic remediation, and chemical oxidation/reduction have been used for the immobilization and removal of toxic metal(loid)s in the soil. However, these conventional methods are associated with certain limitations. These limitations include high operational costs, high energy demands, post-waste disposal difficulties, and secondary pollution. Bioleaching has proven to be a promising alternative to these conventional approaches in removing toxic metal(loid)s from contaminated soil as it is cost-effective, environmentally friendly, and esthetically pleasing. The bioleaching process is influenced by factors including pH, temperature, oxygen, and carbon dioxide supply, as well as nutrients in the medium. It is crucial to monitor these parameters before and throughout the reaction since a change in any, for instance, pH during the reaction, can alter the microbial activity and, therefore, the rate of metal leaching. However, research on these influencing factors and recent innovations has brought significant progress in bioleaching over the years. This critical review, therefore, presents the current approaches to bioleaching and the mechanisms involved in removing toxic metal(loid)s from contaminated soil. We further examined and discussed the fundamental principles of various influencing factors that necessitate optimization in the bioleaching process. Additionally, the future perspectives on adding omics for bioleaching as an emerging technology are discussed.

A critical review on interaction of microplastics with organic contaminants in soil and their ecological risks on soil organisms

The pollution of microplastics (MPs) in soil has become a global environmental problem. Due to high sorption capacity and persistence in environment, the MPs exhibit combined effects with organic pollutants in soil, thereby posing a potential risk to soil ecology and human health. However, limited reviews are available on this subject. Therefore, in response to this issue, this review provides an in-depth account of interaction of MPs with organic contaminants in soil and the combined risks to soil environment. The sorption of organic contaminants onto MPs is mainly through hydrophobic and π-π interactions, hydrogen bonding, pore filling and electrostatic and van der Waals forces. The intrinsic characteristics of MPs, organic contaminants and soil are the key factors influencing the sorption of organic pollutants onto MPs. Importantly, the presence of MPs changes the sorption, degradation and transport behaviors of organic contaminants in soil, and affects the toxic effects of organic contaminants on soil organisms including animals, plants and soil microorganisms through synergistic or antagonistic effects. Source control, policy implementation and plastic removal are the main preventive and control measures to reduce soil MPs pollution. Finally, priorities for future research are proposed, such as field investigations of co-pollution, contribution of plastisphere to organic contaminant degradation, and mechanisms of MPs effects on organic contaminant toxicity.

A Potential Biofertilizer—Siderophilic Bacteria Isolated From the Rhizosphere of Paris polyphylla var. yunnanensis

The increasing demands for crop production have become a great challenge while people also realizing the significance of reductions in synthetic chemical fertilizer use. Plant growth-promoting rhizobacteria (PGPR) are proven biofertilizers for increasing crop yields by promoting plant growth via various direct or indirect mechanisms. Siderophilic bacteria, as an important type of PGPR, can secrete siderophores to chelate unusable Fe³⁺ in the soil for plant growth. Siderophilic bacteria have been shown to play vital roles in preventing diseases and enhancing the growth of plants. Paris polyphylla var. yunnanensis (PPVY) is an important traditional Chinese herb. However, reports about its siderophilic bacteria are still rare. This study firstly isolated siderophilic bacteria from the rhizosphere soil of PPVY, identified by morphological and physio-biochemical characteristics as well as 16S rRNA sequence analysis. The dominant genus in the rhizobacteria of PPVY was Bacillus. Among 22 isolates, 21 isolates produced siderophores. The relative amount of siderophores ranged from 4 to 41%. Most of the isolates produced hydroxamate siderophores and some produced catechol. Four isolates belonging to Enterobacter produced the catechol type, and none of them produced carboxylate siderophores. Intriguingly, 16 strains could produce substances that have inhibitory activity against Candida albicans only in an iron-limited medium (SA medium). The effects of different concentrations of Fe³⁺ and three types of synthetic chemical fertilizers on AS19 growth, siderophore production, and swimming motility were first evaluated from multiple aspects. The study also found that the cell-free supernatant (CFS) with high siderophore units (SUs) of AS19 strain could significantly promote the germination of pepper and maize seeds and the development of the shoots and leaves of Gynura divaricata (Linn.). The bacterial solution of AS19 strain could significantly promote the elongation of the roots of G. divaricata (Linn.). Due to its combined traits promoting plant growth and seed germination, the AS19 has the potential to become a bioinoculant. This study will broaden the application prospects of the siderophilic bacteria-AS19 as biofertilizers for future sustainable agriculture.