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Copper(II) coordination polymer based on l-arginine as a supramolecular hybrid inorganic–organic material: synthesis, structural, spectroscopic and magnetic properties. RESEARCH ON CHEMICAL INTERMEDIATES 2023. [DOI: 10.1007/s11164-023-04957-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
AbstractWe report the synthesis and structural, spectroscopic and magnetic properties of new 1D coordination polymeric complex {[Cu(μ-l-Arg)2]SO4⋅1.5H2O}n (1) that contains asymmetric μ−O,O’ carboxylic bridge linking distorted square-pyramidal [Cu(μ-l-Arg)2]2+ coordination units. In 1D, the syn−anti−μ2−η1:η1zigzag polymer conformation, the adjacent Cu(II) ions are distanced by 5.707 Å, and the subsequent Cu∙∙∙Cu proximity in 1D-coordination chain equals 6.978 Å. Detailed interpretation of IR and Raman spectra of l-arginine and 1 was performed. The principal components of the g tensor determined from EPR experiments (gx = 2.059, gy = 2.075, gz = 2.228) indicate nearly axial symmetry of Cu(II) coordination sphere and correspond to the unpaired electron occupying the dx2–y2 orbital. The single broad band at 16,200 cm–1, characteristic of d−d transition, is assigned to the dominant dublet-dublet 2B1g(dx2–y2)→ 2Eg(dyz≈dxz) transition. Magnetic susceptibility measurements have revealed ferromagnetic coupling between the Cu(II) ions within the 1D-coordination chain, while the intermolecular coupling is antiferromagnetic.
Graphical Abstract
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Santana VT, Cunha BN, Plutín AM, Silveira RG, Castellano EE, Batista AA, Calvo R, Nascimento OR. Magnetic-field-tuned phase transition of a molecular material from the isolated-spin to the coupled-spin regime. Phys Chem Chem Phys 2019; 21:4394-4407. [DOI: 10.1039/c8cp06719h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
A quantum phase transition, as a consequence of spin-entanglements caused by Cu–Cu exchange couplings, explains EPR measurements in a new monomeric CuII compound.
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Affiliation(s)
- Vinicius T. Santana
- CEITEC – Central European Institute of Technology
- Brno University of Technology
- 61200 Brno
- Czech Republic
- Departamento de Física e Ciencias Interdisciplinares
| | - Beatriz N. Cunha
- Departamento de Química
- Universidade Federal de São Carlos – UFSCar
- São Carlos
- Brazil
- Instituto Federal Goiano
| | - Ana M. Plutín
- Laboratorio de Síntesis Orgánica
- Facultad de Química
- Universidad de la Habana UH
- Cuba
| | - Rafael G. Silveira
- Departamento de Química
- Universidade Federal de São Carlos – UFSCar
- São Carlos
- Brazil
- Instituto Federal Goiano
| | - Eduardo E. Castellano
- Departamento de Física e Ciencias Interdisciplinares
- Instituto de Física de São Carlos
- Universidade de São Paulo – USP
- CP 369
- São Carlos
| | - Alzir A. Batista
- Departamento de Química
- Universidade Federal de São Carlos – UFSCar
- São Carlos
- Brazil
| | - Rafael Calvo
- Instituto de Física del Litoral
- CONICET-UNL, and Departamento de Física
- Facultad de Bioquímica y Ciencias Biológicas
- Universidad Nacional del Litoral
- 3000 Santa Fe
| | - Otaciro R. Nascimento
- Departamento de Física e Ciencias Interdisciplinares
- Instituto de Física de São Carlos
- Universidade de São Paulo – USP
- CP 369
- São Carlos
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Piscopo M, Trifuoggi M, Scarano C, Gori C, Giarra A, Febbraio F. Relevance of arginine residues in Cu(II)-induced DNA breakage and Proteinase K resistance of H1 histones. Sci Rep 2018; 8:7414. [PMID: 29743544 PMCID: PMC5943286 DOI: 10.1038/s41598-018-25784-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Accepted: 04/24/2018] [Indexed: 01/12/2023] Open
Abstract
This work analyzes the involvement of arginines in copper/H2O2-induced DNA breakage. Copper is a highly redox active metal which has been demonstrated to form compounds with arginines. For this aim we used mixtures of pGEM3 DNA plasmid and two types of H1 histones which differ only in their arginine content. The sperm H1 histone from the annelid worm Chaetopterus variopedatus (arginine content 12.6 mol% K/R ratio 2) and the somatic H1 histone from calf thymus (arginine content 1.8 mol% and K/R ratio 15). Copper/H2O2-induced DNA breakage was observed only in presence of sperm H1 histones, but it was more relevant for the native molecule than for the deguanidinated derivative (K/R ratio 14), in which 80% of arginine residues were converted to ornithine. Further, copper induced proteinase K resistance and increase of DNA binding affinity on native sperm H1 histones. These observations are consistent with a copper induced reorganization of the side-chains of arginine residues. Copper, instead, did not affect DNA binding affinity of somatic and deguanidinated H1 histones, which show similar K/R ratio and DNA binding mode. These results indicate that arginine residues could affect these H1 histones properties and provide new insights into copper toxicity mechanisms.
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Affiliation(s)
- Marina Piscopo
- Dipartimento di Biologia, Università degli Studi di Napoli Federico II, 80126, Napoli, Italy.
| | - Marco Trifuoggi
- Dipartimento di Scienze Chimiche, Università degli Studi di Napoli Federico II, 80126, Napoli, Italy
| | - Carmela Scarano
- Dipartimento di Biologia, Università degli Studi di Napoli Federico II, 80126, Napoli, Italy
| | - Carla Gori
- CNR, Institute of Protein Biochemistry, 80131, Napoli, Italy
| | - Antonella Giarra
- Dipartimento di Scienze Chimiche, Università degli Studi di Napoli Federico II, 80126, Napoli, Italy
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Ali ME, Oppeneer PM. Unraveling the Electronic Structure, Spin States, Optical and Vibrational Spectra of Malaria Pigment. Chemistry 2015; 21:8544-53. [DOI: 10.1002/chem.201406208] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2014] [Indexed: 12/19/2022]
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Electron paramagnetic resonance study of ternary CuII compounds with glycine and phenanthroline. J CHEM SCI 2014. [DOI: 10.1007/s12039-013-0553-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Takayama A, Yoshikawa R, Iyoku S, Kasuga NC, Nomiya K. Synthesis, structure and antimicrobial activity of L-argininesilver(1+) nitrate. Polyhedron 2013. [DOI: 10.1016/j.poly.2012.07.031] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Single crystal electron paramagnetic resonance spectra of CuII ions in Cu(tyrosine)2. J Inorg Biochem 2012; 114:75-81. [DOI: 10.1016/j.jinorgbio.2012.04.013] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Revised: 04/10/2012] [Accepted: 04/11/2012] [Indexed: 11/17/2022]
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Three new metal–organic frameworks constructed from triazol-phenyl polycarboxyl acid: Synthesis, crystal structures and properties. Polyhedron 2012. [DOI: 10.1016/j.poly.2012.01.018] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Venegas-Yazigi D, Brown KA, Vega A, Calvo R, Aliaga C, Santana RC, Cardoso-Gil R, Kniep R, Schnelle W, Spodine E. Exchange Interactions Through π–π Stacking in the Lamellar Compound [{Cu(bipy)(en)}{Cu(bipy)(H2O)}{VO3}4]n. Inorg Chem 2011; 50:11461-71. [DOI: 10.1021/ic201278a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Diego Venegas-Yazigi
- Facultad de Química y
Biología, Universidad de Santiago de Chile, USACH, Santiago,
Chile
- Centro para el Desarrollo de
Nanociencias y Nanotecnología, CEDENNA, Santiago, Chile
| | - Kareen A. Brown
- Centro para el Desarrollo de
Nanociencias y Nanotecnología, CEDENNA, Santiago, Chile
- Facultad de Ciencias Químicas
y Farmacéuticas, Universidad de Chile, Santiago, Chile
| | - Andrés Vega
- Centro para el Desarrollo de
Nanociencias y Nanotecnología, CEDENNA, Santiago, Chile
- Departamento de Ciencias Químicas,
Universidad Andres Bello, Santiago, Chile
| | - Rafael Calvo
- Facultad de Bioquímica
y Ciencias Biológicas and INTEC, CONICET-Universidad Nacional
del Litoral, 3000 Santa Fe, Argentina
| | - Carolina Aliaga
- Facultad de Química y
Biología, Universidad de Santiago de Chile, USACH, Santiago,
Chile
- Centro para el Desarrollo de
Nanociencias y Nanotecnología, CEDENNA, Santiago, Chile
| | - Ricardo C. Santana
- Instituto de Física,
Universidade Federal de Goiás, CP 131, 74001-970 Goiânia,
Brazil
| | - Raul Cardoso-Gil
- Max-Planck-Institut für
Chemische Physik fester Stoffe, Dresden, Germany
| | - Rüdiger Kniep
- Max-Planck-Institut für
Chemische Physik fester Stoffe, Dresden, Germany
| | - Walter Schnelle
- Max-Planck-Institut für
Chemische Physik fester Stoffe, Dresden, Germany
| | - Evgenia Spodine
- Centro para el Desarrollo de
Nanociencias y Nanotecnología, CEDENNA, Santiago, Chile
- Facultad de Ciencias Químicas
y Farmacéuticas, Universidad de Chile, Santiago, Chile
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Buvaylo EA, Kokozay VN, Vassilyeva OY, Skelton BW, Jezierska J. Cu/Cd heterometallic solids with the motif (H2dea=diethanolamine): Exchange interactions through hydrogen bonding. Inorganica Chim Acta 2009. [DOI: 10.1016/j.ica.2008.10.037] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Magnetic coupling detected by EPR in a paddle-wheel copper(II) complex of the amino acid guanidinoacetic acid. INORG CHEM COMMUN 2008. [DOI: 10.1016/j.inoche.2008.02.021] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Hu R, Yu Q, Liang F, Ma L, Chen X, Zhang M, Liang H, Yu K. Syntheses and crystal structures of cis - and trans -copper(II) complexes of L-arginine. J COORD CHEM 2008. [DOI: 10.1080/00958970701572386] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Ruixiang Hu
- a College of Chemistry and Chemical Engineering , Guangxi Normal University , Guilin, 541004, P.R. China
| | - Qing Yu
- a College of Chemistry and Chemical Engineering , Guangxi Normal University , Guilin, 541004, P.R. China
| | - Fupei Liang
- a College of Chemistry and Chemical Engineering , Guangxi Normal University , Guilin, 541004, P.R. China
| | - Lufang Ma
- a College of Chemistry and Chemical Engineering , Guangxi Normal University , Guilin, 541004, P.R. China
| | - Xiongbing Chen
- a College of Chemistry and Chemical Engineering , Guangxi Normal University , Guilin, 541004, P.R. China
| | - Manbo Zhang
- a College of Chemistry and Chemical Engineering , Guangxi Normal University , Guilin, 541004, P.R. China
| | - Hong Liang
- a College of Chemistry and Chemical Engineering , Guangxi Normal University , Guilin, 541004, P.R. China
| | - Kaibei Yu
- b Chengdu Analysis Center , Chengdu Branch of Chinese Academy of Science , Chengdu, 610041, P.R. China
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Santana RC, Carvalho JF, Vencato I, Napolitano HB, Bortoluzzi AJ, Barberis GE, Rapp RE, Passeggi MC, Calvo R. Synthesis, crystal structure and magnetic properties of a new dinuclear copper(II) amino acid complex [Cu2(l-arg)2(μ-HPO4-O)(μ-HPO4-O,O′)(μ-OH)]−·(H3O)+·(H2O)6. Polyhedron 2007. [DOI: 10.1016/j.poly.2007.07.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Vieira ED, Casado NMC, Facchin G, Torre MH, Costa-Filho AJ, Calvo R. Weak Exchange Interaction Supported by a Biologically Relevant Long Chemical Bridge in a Cu−Peptide Model Compound. Inorg Chem 2006; 45:2942-7. [PMID: 16562949 DOI: 10.1021/ic051957b] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The copper complex of the dipeptide L-alanyl-L-phenylalanine, catena-(L-alaninate-L-phenylalaninate-copper(II) monohydrate), identified as Cu(II)Ala-Phe, provides a convenient system to study a weak exchange interaction between unpaired spins transmitted through a biologically relevant long chemical bridge (18.34 A). In this complex, the copper ions are arranged in two symmetry-related anisotropic layers parallel to the ab plane at 13.17 A, separated by a double layer of water molecules. The equatorial-equatorial bridge considered as the most relevant path for exchange interactions between copper ions in neighbor layers contains 11 diamagnetic atoms (including three hydrogens), with two covalent amidate bridges plus three weak and moderate H bonds that go across the water layer. This interaction was studied using electron paramagnetic resonance in single-crystal samples, at 9.5 and 34.5 GHz. The measured magnitude of the interlayer interaction, |J3|/kB = 1.7(2) x 10(-3) K, is discussed in terms of values obtained for similar paths in other model compounds and in proteins. These results in model systems provide information that may be important in understanding biological functions at the molecular level.
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Affiliation(s)
- Ernanni D Vieira
- Grupo de Biofísica Molecular Sergio Mascarenhas, Departamento de Física e Informatica, Instituto de Física de São Carlos, Universidade de São Paulo, C.P. 369, CEP 13560-970, São Carlos, SP, Brazil
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