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Shiraishi N, Hirano Y. Combination of Copper Ions and Nucleotide Generates Aggregates from Prion Protein Fragments in the N-Terminal Domain. Protein Pept Lett 2021; 27:782-792. [PMID: 32096738 DOI: 10.2174/0929866527666200225124829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 12/13/2019] [Accepted: 12/17/2019] [Indexed: 11/22/2022]
Abstract
BACKGROUND It has been previously found that PrP23-98, which contains four highly conserved octarepeats (residues 60-91) and one partial repeat (residues 92-96), polymerizes into amyloid-like and proteinase K-resistant spherical aggregates in the presence of NADPH plus copper ions. OBJECTIVE We aimed to determine the requirements for the formation of these aggregates. METHODS In this study, we performed an aggregation experiment using N-acetylated and Camidated PrP fragments of the N-terminal domain, Octa1, Octa2, Octa3, Octa4, PrP84-114, and PrP76-114, in the presence of NADPH with copper ions, and focused on the effect of the number of copper-binding sites on aggregation. RESULTS Among these PrP fragments, Octa4, containing four copper-binding sites, was particularly effective in forming aggregates. We also tested the effect of other pyridine nucleotides and adenine nucleotides on the aggregation of Octa4. ATP was equally effective, but NADH, NADP, ADP, and AMP had no effect. CONCLUSION The phosphate group on the adenine-linked ribose moiety of adenine nucleotides and pyridine nucleotides is presumed to be essential for the observed effect on aggregation. Efficient aggregation requires the presence of the four octarepeats. These insights may be helpful in the eventual development of therapeutic agents against prion-related disorders.
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Affiliation(s)
- Noriyuki Shiraishi
- Department of Nutrition, Tokai Gakuen University, 2-901 Nakahira, Nagoya 468-8514, Japan
| | - Yoshiaki Hirano
- Department of Nutrition, Tokai Gakuen University, 2-901 Nakahira, Nagoya 468-8514, Japan
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Cuaran-Acosta D, Londoño-Larrea P, Zaballos-García E, Pérez-Prieto J. Reversible pH-induced fluorescence colour change of gold nanoclusters based on pH-regulated surface interactions. Chem Commun (Camb) 2019; 55:1604-1606. [DOI: 10.1039/c8cc06664g] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
A water-dispersible, biocompatible, fluorescent ratiometric pH nanosensor over a broad pH range is reported.
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Affiliation(s)
| | | | | | - Julia Pérez-Prieto
- Instituto de Ciencia Molecular (ICMol), Universidad de Valencia
- Paterna
- Spain
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Medina M, Rizo A, Dinh D, Chau B, Omidvar M, Juarez A, Ngo J, Johnson HA. MopA, the Mn Oxidizing Protein From Erythrobacter sp. SD-21, Requires Heme and NAD + for Mn(II) Oxidation. Front Microbiol 2018; 9:2671. [PMID: 30487779 PMCID: PMC6247904 DOI: 10.3389/fmicb.2018.02671] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 10/19/2018] [Indexed: 11/15/2022] Open
Abstract
Bacterial manganese (Mn) oxidation is catalyzed by a diverse group of microbes and can affect the fate of other elements in the environment. Yet, we understand little about the enzymes that catalyze this reaction. The Mn oxidizing protein MopA, from Erythrobacter sp. strain SD-21, is a heme peroxidase capable of Mn(II) oxidation. Unlike Mn oxidizing multicopper oxidase enzymes, an understanding of MopA is very limited. Sequence analysis indicates that MopA contains an N-terminal heme peroxidase domain and a C-terminal calcium binding domain. Heterologous expression and nickel affinity chromatography purification of the N-terminal peroxidase domain (MopA-hp) from Erythrobacter sp. strain SD-21 led to partial purification. MopA-hp is a heme binding protein that requires heme, NAD+, and calcium (Ca2+) for activity. Mn oxidation is also stimulated by the presence of pyrroloquinoline quinone. MopA-hp has a KM for Mn(II) of 154 ± 46 μM and kcat = 1.6 min−1. Although oxygen requiring MopA-hp is homologous to peroxidases based on sequence, addition of hydrogen peroxide and hydrogen peroxide scavengers had little effect on Mn oxidation, suggesting this is not the oxidizing agent. These studies provide insight into the mechanism by which MopA oxidizes Mn.
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Affiliation(s)
- Michael Medina
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
| | - Antonia Rizo
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
| | - David Dinh
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
| | - Briana Chau
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
| | - Moussa Omidvar
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
| | - Andrew Juarez
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
| | - Julia Ngo
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
| | - Hope A Johnson
- Department of Biological Science, Center for Applied Biotechnology Studies, California State University Fullerton, Fullerton, CA, United States
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Copper(II) ions interactions in the systems with triamines and ATP. Potentiometric and spectroscopic studies. J Inorg Biochem 2017; 177:89-100. [PMID: 28941402 DOI: 10.1016/j.jinorgbio.2017.09.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 09/06/2017] [Accepted: 09/06/2017] [Indexed: 02/02/2023]
Abstract
The mode of interaction and thermodynamic stability of complexes formed in binary and ternary Cu(II)/ATP/triamines systems were studied using potentiometric and spectroscopic (NMR, EPR, UV-Vis) methods. It was found that in binary metal-free systems ATP/HxPA species are formed (PA: Spd=spermidine or 3,3-tri=1,7-diamino-4-azaheptane) where the phosphate groups from nucleotides are preferred negative centers and protonated amine groups of amines are positive centers of reaction. In the ternary systems Cu/ATP/Hx(PA) as well as Cu/(ATP)(PA) species are formed. The type of the formed Cu(II) complexes depends on pH of the solution. For a low pH value the complexation appears between Cu(II) and ATP molecules via oxygen atoms of phosphate groups. For a very high pH value, where ATP is hydrolyzed, the Cu(II) ions are bound to the nitrogen atoms of polyamine molecules. We did not detect any direct coordination of the N7 nitrogen atom of adenosine to Cu(II) ions. It means that the CuN7 interaction is an indirect type and can be due to noncovalent interplay including water molecule. EPR studies were performed at glassy state (77K) after a fast freezing both for binary and ternary systems. The glassy state EPR spectra do not reflect species identified in titration studies indicating significant effect of rapid temperature decrease on equilibrium of Cu(II) complexes. We propose the molecular structure of all the studied complexes at the glassy state deduced from EPR and optical spectroscopy results.
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Chans GM, Gómez E, Gómez-Vidales V, Toscano RA, Álvarez-Toledano C. Synthesis, molecular structure, and spectral analysis of copper(II) complexes derived from pyridinediols. J COORD CHEM 2014. [DOI: 10.1080/00958972.2014.982111] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Guillermo M. Chans
- Instituto de Química, Universidad Nacional Autónoma de México, México D.F., Mexico
| | - Elizabeth Gómez
- Instituto de Química, Universidad Nacional Autónoma de México, México D.F., Mexico
| | | | - R. Alfredo Toscano
- Instituto de Química, Universidad Nacional Autónoma de México, México D.F., Mexico
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Pratumwieng R, Soikum C, Chaveerach P, Chaveerach U. Binding studies of ( N -(methylpyridin-2-yl)-amidino- O -methylurea)copper(II) complexes to four nitrogenous bases and 5′-GMP. Inorganica Chim Acta 2014. [DOI: 10.1016/j.ica.2014.08.027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Peng L, Xu X, Guo M, Yan X, Wang S, Gao S, Zhu S. Effects of metal ions and disulfide bonds on the activity of phosphodiesterase from Trimeresurus stejnegeri venom. Metallomics 2014; 5:920-7. [PMID: 23775423 DOI: 10.1039/c3mt00031a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Obviously different from the other known phosphodiesterases, the phosphodiesterase from Trimeresurus stejnegeri venom (TS-PDE) consists of two different chains linked with disulfide bonds and contains both endogenous Cu(2+) and Zn(2+). Cu(2+) and Zn(2+) are important for its phosphodiesterase activity. In this study, the effects of metal ions and small-molecule reductants on its structure and activity have been investigated by polyacrylamide gel electrophoresis, high performance liquid chromatography, fluorescence and electron paramagnetic resonance spectroscopy. The results show that TS-PDE has one class of Zn(2+) binding site and two classes of Cu(2+) binding site, including the high affinity activator sites and the low affinity sites. Cu(2+) ions function as a switch for its phosphodiesterase activity. The catalytic activity of TS-PDE does not have an absolute requirement for Cu(2+) and Zn(2+). Mg(2+), Mn(2+), Ni(2+), Co(2+) and Ca(2+) are all effective for its phosphodiesterase activity. TS-PDE has seven disulfide bonds and ten free cysteine residues. l-Ascorbate inhibits the phosphodiesterase activity of TS-PDE through reduction of the Cu(2+), while dithiothreitol, glutathione and tris(2-carboxyethyl)phosphine inhibit the phosphodiesterase activity of TS-PDE by reducing both the Cu(2+) and disulfide bonds. The catalytic activity of TS-PDE relies on its disulfide bonds and bimetallic cluster. In addition, biologically-relevant reductants, glutathione and l-ascorbate, have been found to be endogenous inhibitors to the phosphodiesterase activity of TS-PDE.
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Affiliation(s)
- Lili Peng
- Department of Chemistry, University of Science and Technology of China, Hefei, P. R. China
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Hoffmann SK, Goslar J, Lijewski S. Electron Paramagnetic Resonance and Electron Spin Echo Studies of Co 2+ Coordination by Nicotinamide Adenine Dinucleotide (NAD +) in Water Solution. APPLIED MAGNETIC RESONANCE 2013; 44:817-826. [PMID: 23766555 PMCID: PMC3677979 DOI: 10.1007/s00723-013-0444-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2012] [Revised: 01/31/2013] [Indexed: 06/02/2023]
Abstract
Co2+ binding to the nicotinamide adenine dinucleotide (NAD+) molecule in water solution was studied by electron paramagnetic resonance (EPR) and electron spin echo at low temperatures. Cobalt is coordinated by NAD+ when the metal is in excess only, but even in such conditions, the Co/NAD+ complexes coexist with Co(H2O)6 complexes. EPR spin-Hamiltonian parameters of the Co/NAD+ complex at 6 K are gz = 2.01, gx = 2.38, gy = 3.06, Az = 94 × 10-4 cm-1, Ax = 33 × 10-4 cm-1 and Ay = 71 × 10-4 cm-1. They indicate the low-spin Co2+ configuration with S = 1/2. Electron spin echo envelope modulation spectroscopy with Fourier transform of the modulated spin echo decay shows a strong coordination by nitrogen atoms and excludes the coordination by phosphate and/or amide groups. Thus, Co2+ ion is coordinated in pseudo-tetrahedral geometry by four nitrogen atoms of adenine rings of two NAD+ molecules.
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Affiliation(s)
- Stanisław K. Hoffmann
- Institute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego 17, 60-179 Poznan, Poland
| | - Janina Goslar
- Institute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego 17, 60-179 Poznan, Poland
| | - Stefan Lijewski
- Institute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego 17, 60-179 Poznan, Poland
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Anitha C, Sheela CD, Tharmaraj P, Johnson Raja S. Synthesis and characterization of VO(II), Co(II), Ni(II), Cu(II) and Zn(II) complexes of chromone based azo-linked Schiff base ligand. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 98:35-42. [PMID: 22982386 DOI: 10.1016/j.saa.2012.08.022] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2012] [Revised: 07/12/2012] [Accepted: 08/12/2012] [Indexed: 06/01/2023]
Abstract
Azo-Schiff-base complexes of VO(II), Co(II), Ni(II), Cu(II) and Zn(II) have been synthesized and characterized by elemental analysis, IR, UV-Vis, (1)H NMR, mass spectra, molar conductance, magnetic susceptibility measurement, electron spin resonance (EPR), CV, fluorescence, NLO and SEM. The conductance data indicate the nonelectrolytic nature of the complexes, except VO(II) complex which is electrolytic in nature. On the basis of electronic spectra and magnetic susceptibility octahedral geometry has been proposed for the complexes. The EPR spectra of copper and oxovanadium complexes in DMSO at 300 and 77K were recorded and its salient features are reported. The redox behavior of the copper(II) complex was studied using cyclic voltammetry. The in vitro antimicrobial activity against Staphylococcus aureus, Escherichia coli, Salmonella enterica typhi, Bacillus subtilis and Candida strains was studied and compared with that of free ligand by well-diffusion technique. The azo Schiff base exhibited fluorescence properties originating from intraligand (π-π(*)) transitions and metal-mediated enhancement is observed on complexation and so the synthesized complexes can serve as potential photoactive materials as indicated from their characteristic fluorescence properties. On the basis of the optimized structures, the second-order nonlinear optical properties (NLO) are calculated by using second-harmonic generation (SHG) and also the surface morphology of the complexes was studied by SEM.
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Affiliation(s)
- C Anitha
- Department of Chemistry, Thiagarajar College, Madurai 625 009, India
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